75710da667
Merge branch 'master' into core-updates
2015-09-13 21:28:01 +02:00
194c7f95f1
gnu: Add FLANN.
...
* gnu/packages/maths.scm (flann): New variable.
2015-09-06 19:34:09 +02:00
96c4621056
gnu: Use 'install-file' instead of 'mkdir-p' and 'copy-file' in obvious cases.
...
* gnu/packages/bioinformatics.scm (bedtools, bowtie, bwa, hisat, samtools,
plink, star): Use 'install-file' instead of 'mkdir-p' + 'copy-file'.
* gnu/packages/check.scm (catch-framework): Likewise.
* gnu/packages/code.scm (global): Likewise.
* gnu/packages/emacs.scm (magit-svn, haskell-mode, emacs-pdf-tools):
Likewise.
* gnu/packages/engineering.scm (fastcap, fasthenry): Likewise.
* gnu/packages/gnuzilla.scm (nss): Likewise.
* gnu/packages/guile.scm (guile-minikanren): Likewise.
* gnu/packages/java.scm (swt): Likewise.
* gnu/packages/make-bootstrap.scm (%static-binaries): Likewise.
* gnu/packages/maths.scm (lpsolve): Likewise.
* gnu/packages/mp3.scm (mpc123): Likewise.
* gnu/packages/ninja.scm (ninja): Likewise.
* gnu/packages/python.scm (python-numpy, python-pyparsing): Likewise.
* gnu/packages/screen.scm (dtach): Likewise.
* gnu/packages/synergy.scm (synergy): Likewise.
* gnu/packages/textutils.scm (utf8proc): Likewise.
* gnu/packages/version-control.scm (git-test-sequence): Likewise.
* gnu/packages/wicd.scm (wicd): Likewise.
2015-08-29 01:25:08 +02:00
c01876b1af
gnu: pspp: Update to 0.8.5.
...
* gnu/packages/maths.scm (pspp)[source]: Update to 0.8.5.
[native-inputs]: Add TEXINFO.
2015-07-21 01:12:34 +02:00
e881752c39
gnu packages: Clean up synopses and descriptions.
...
* gnu/packages/admin.scm, gnu/packages/algebra.scm, gnu/packages/audio.scm,
gnu/packages/backup.scm, gnu/packages/base.scm, gnu/packages/bittorrent.scm,
gnu/packages/code.scm, gnu/packages/compression.scm,
gnu/packages/databases.scm, gnu/packages/enchant.scm,
gnu/packages/firmware.scm, gnu/packages/fonts.scm,
gnu/packages/freedesktop.scm, gnu/packages/games.scm, gnu/packages/gd.scm,
gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gsasl.scm,
gnu/packages/gstreamer.scm, gnu/packages/gtk.scm, gnu/packages/guile.scm,
gnu/packages/haskell.scm, gnu/packages/language.scm,
gnu/packages/lesstif.scm, gnu/packages/libreoffice.scm,
gnu/packages/linux.scm, gnu/packages/llvm.scm, gnu/packages/maths.scm,
gnu/packages/mcrypt.scm, gnu/packages/mit-krb5.scm, gnu/packages/mp3.scm,
gnu/packages/ncdu.scm, gnu/packages/networking.scm, gnu/packages/ntp.scm,
gnu/packages/ocaml.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl.scm, gnu/packages/pretty-print.scm,
gnu/packages/pulseaudio.scm, gnu/packages/python.scm,
gnu/packages/rdesktop.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm,
gnu/packages/slang.scm, gnu/packages/slim.scm, gnu/packages/telephony.scm,
gnu/packages/tls.scm, gnu/packages/tmux.scm, gnu/packages/tre.scm,
gnu/packages/unrtf.scm, gnu/packages/version-control.scm,
gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wget.scm,
gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xiph.scm:
Fix typos. Trim long lines. Add missing periods in the end of sentences.
Use double spaces between sentences. Remove trailing whitespaces.
2015-07-18 13:05:01 +03:00
7c125ce023
gnu packages: Avoid description lines with leading "(".
...
* gnu/packages/curl.scm (curl): Reformat description to avoid a line
beginning with "(" because such lines break font-lock highlighting
in Emacs.
* gnu/packages/flashing-tools.scm (dfu-programmer): Likewise.
* gnu/packages/games.scm (gnugo): Likewise.
* gnu/packages/gnome.scm (json-glib): Likewise.
* gnu/packages/image.scm (jbig2dec): Likewise.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/pdf.scm (mupdf): Likewise.
* gnu/packages/web.scm (perl-encode-locale): Likewise.
* gnu/packages/wordnet.scm (wordnet): Likewise.
* gnu/packages/xml.scm (libxml2):Likewise.
2015-07-18 13:05:01 +03:00
a17d45641b
gnu: Add deal.II.
...
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-06-29 15:34:36 -05:00
a7f0141452
gnu: Add SLEPc.
...
* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
(slepc-complex-openmpi): New variables.
2015-06-29 15:34:36 -05:00
8c94c886f6
gnu: Add arpack-ng-openmpi.
...
* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
2015-06-29 15:34:36 -05:00
9a899cceab
gnu: petsc: Upgrade to 3.6.0.
...
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-06-29 15:34:36 -05:00
cec86422b7
gnu: Add MUMPS.
...
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
(mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-06-29 15:34:36 -05:00
aa75ad0097
gnu: Add METIS.
...
* gnu/packages/maths.scm (metis): New variable.
2015-06-29 15:34:36 -05:00
700ff22219
gnu: Add p4est.
...
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
2015-06-29 15:34:36 -05:00
e1ff597a64
gnu: Add ScaLAPACK.
...
* gnu/packages/maths.scm (scalapack): New variable.
2015-06-29 15:34:36 -05:00
cf0ec6c46e
gnu: scotch, pt-scotch: Build esmumps libraries.
...
* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
phase. Install esmumps libraries and headers in 'install phase.
(pt-scotch)[arguments]: Build ptesmumps in 'build phase. Add
make parallelism.
2015-06-29 15:34:36 -05:00
d6602ee9d4
gnu: scotch, pt-scotch: Use modify-phases.
...
* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
2015-06-29 15:34:36 -05:00
6c7985408f
gnu: Update scotch to 6.0.4.
...
* gnu/packages/maths.scm (scotch): Update to 6.0.4.
[arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-06-29 15:34:36 -05:00
19afbea136
gnu: Replace versioned gfortran inputs with just "gfortran".
...
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
"gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
(superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
(octave)[native-inputs]: Likewise.
(gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
"gfortran".
2015-06-25 18:28:54 +02:00
180a93c72a
gnu: gsl: Fix poly test on i686.
...
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
gnu/packages/patches/gsl-poly-test-fix-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (gsl)[source]: Add patches.
2015-06-20 01:38:56 -04:00
0004c5904c
packages: Make 'location' field innate.
...
* guix/packages.scm (<package>)[location]: Add 'innate' property.
* guix/build-system/gnu.scm (static-package): Remove 'loc' parameter and
'location' field.
* gnu/packages/autotools.scm (autoconf-wrapper): Remove 'location' field.
* gnu/packages/commencement.scm (gnu-make-boot0, diffutils-boot0, gcc-final):
Likewise.
* gnu/packages/cross-base.scm (cross): Likewise.
* gnu/packages/emacs.scm (emacs-no-x, emacs-no-x-toolkit): Likewise.
* gnu/packages/make-bootstrap.scm (tarball-package): Likewise.
* gnu/packages/maths.scm (petsc-complex): Likewise.
2015-06-11 23:33:32 +02:00
9aafbc0c13
gnu: Add wxmaxima.
...
* gnu/packages/maths.scm (wxmaxima): New variable.
2015-05-26 10:24:11 -04:00
77af7b2407
gnu: maxima: Update to 5.36.1.
...
* gnu/packages/patches/maxima-defsystem-mkdir.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (maxima): Update to 5.36.1. Add patch.
2015-05-26 10:23:38 -04:00
7f18257bea
gnu: Add lpsolve.
...
* gnu/packages/maths.scm (lpsolve): New variable.
2015-05-20 23:21:50 +02:00
5b5ea159ac
gnu: openblas: Disable DYNAMIC_ARCH on MIPS.
...
* gnu/packages/maths.scm (openblas)[arguments]: Do not pass DYNAMIC_ARCH when
building for MIPS. Also make non-substitutable for MIPS.
2015-05-20 13:30:24 +02:00
ecf28847b2
gnu: openblas: Update to 0.2.14.
...
* gnu/packages/maths.scm (openblas): Update to 0.2.14.
2015-05-15 13:53:30 +02:00
1ec78e9d71
gnu: octave: Add fftw, arpack, and glu inputs.
...
* gnu/packages/maths.scm (octave)[inputs]: Add fftw, fftwf, arpack,
and glu.
[description]: Wrap to 80 columns.
2015-05-11 10:10:00 -05:00
af5b817ea9
gnu: openblas: build for all supported CPUs.
...
* gnu/packages/maths.scm (openblas)[arguments]: Add "DYNAMIC_ARCH=1" to
make flags. Remove "#:substitutable? #f".
2015-03-26 07:54:55 +01:00
87db65507e
Remove unused patchelf inputs.
...
* gnu/packages/maths.scm (lapack, gmsh), gnu/packages/ssh.scm (libssh): Remove
unused patchelf from native-inputs.
2015-03-23 13:30:06 -04:00
61a529b421
gnu: Add double-conversion.
...
* gnu/packages/maths.scm (double-conversion): New variable.
2015-03-23 10:38:06 +01:00
2742f87e17
gnu: Add SuiteSparse.
...
* gnu/packages/maths.scm (suitesparse): New variable.
2015-03-23 10:19:45 +01:00
e73b49fbd6
gnu: Add openblas.
...
* gnu/packages/maths.scm (openblas): New variable.
2015-03-23 10:08:28 +01:00
166191b377
gnu: Update packages to use 'non-copyleft' instead of 'bsd-style'.
...
* gnu/packages/avr.scm, gnu/packages/compression.scm,
gnu/packages/curl.scm, gnu/packages/cyrus-sasl.scm,
gnu/packages/databases.scm, gnu/packages/firmware.scm,
gnu/packages/flex.scm, gnu/packages/fontutils.scm,
gnu/packages/gd.scm, gnu/packages/ghostscript.scm,
gnu/packages/gnunet.scm, gnu/packages/graphics.scm,
gnu/packages/hugs.scm, gnu/packages/image.scm,
gnu/packages/linux.scm, gnu/packages/mail.scm,
gnu/packages/maths.scm, gnu/packages/mit-krb5.scm,
gnu/packages/python.scm, gnu/packages/rdf.scm,
gnu/packages/ssh.scm, gnu/packages/tcl.scm,
gnu/packages/xdisorg.scm, gnu/packages/xiph.scm,
gnu/packages/yasm.scm, gnu/packages/zip.scm: Use 'non-copyleft'
instead of 'bsd-style'.
2015-03-14 19:27:14 +01:00
c12efc72cf
gnu: Add glm.
...
* gnu/packages/maths.scm (glm): New variable.
Co-authored-by: John Darrington <john@darrington.wattle.id.au>
2015-03-14 17:39:58 +01:00
12ed1216de
gnu: hdf5: Add input zlib.
...
* gnu/packages/maths.scm (hdf5): Add input zlib.
2015-03-13 00:15:47 +01:00
40029cbe30
gnu: hdf5: Combine all outputs into one.
...
* gnu/packages/maths.scm (hdf5): Combine the outputs "out", "bin", "lib" and
"include" into "out".
(gmsh, octave): Adapt list of inputs.
2015-03-12 23:59:49 +01:00
e62be58fc3
gnu: Add openspecfun.
...
* gnu/packages/maths.scm (openspecfun): New variable.
2015-03-10 23:39:12 +01:00
e1605e36a8
gnu: Add openlibm.
...
* gnu/packages/maths.scm (openlibm): New variable.
2015-03-10 23:38:55 +01:00
279663efa5
gnu: Add muparser.
...
* gnu/packages/maths.scm (muparser): New variable.
2015-03-05 08:01:15 +01:00
1289062522
Merge branch 'core-updates'.
2015-03-04 14:07:23 +01:00
32158110b0
gnu: octave: Update to 3.8.2.
...
* gnu/packages/maths.scm (octave): Update to 3.8.2.
2015-03-04 16:45:23 +08:00
f586c87705
gnu: Add 'file-name' fields for github source tarballs without a name.
...
* gnu/packages/aarddict.scm (aarddict), gnu/packages/algebra.scm (arb),
gnu/packages/audio.scm (jack-2, lvtk),
gnu/packages/bioinformatics.scm (bedops, bedtools, bowtie),
gnu/packages/game-development.scm (tiled),
gnu/packages/games.scm (minetest-data, minetest, retroarch),
gnu/packages/jrnl.scm (jrnl), gnu/packages/kde.scm (qjson),
gnu/packages/libevent.scm (libuv), gnu/packages/linux.scm (pflask),
gnu/packages/mail.scm (offlineimap, libetpan),
gnu/packages/maths.scm (arpack-ng), gnu/packages/ninja.scm (ninja),
gnu/packages/nutrition.scm (gourmet),
gnu/packages/python.scm (python-cairocffi), gnu/packages/rdf.scm (lrdf),
gnu/packages/ruby.scm (ruby-i18n), gnu/packages/sxiv.scm (sxiv): Add
'file-name' field to origin.
2015-02-28 09:49:01 -05:00
865a69ddc8
gnu: Add arpack-ng.
...
* gnu/packages/maths.scm (arpack-ng): New variable.
2015-02-20 14:26:48 +01:00
85f4190221
gnu: gmsh: Add glu to inputs.
...
* gnu/packages/maths.scm (gmsh): Add glu to inputs.
2014-12-27 11:18:29 -05:00
01480b9e1c
gnu: atlas: Remove MIPS from 'supported-systems'.
...
* gnu/packages/maths.scm (atlas): Drop support for "mips64el-linux".
2014-12-08 09:54:34 +01:00
af89a66735
gnu: atlas: Try to fix build on MIPS.
...
* gnu/packages/maths.scm (atlas): Add MIPS specific configure flags.
2014-11-23 15:37:29 +01:00
f15615b119
gnu: atlas: Make it non-substitutable.
...
Suggested by Federico Beffa <beffa@ieee.org>.
* gnu/packages/maths.scm (atlas)[arguments]: Pass #:substitutable? #f.
[description]: Adjust accordingly.
2014-10-28 10:17:55 +01:00
35b9e4232c
gnu: Some cleanup based on lint checkers.
...
* gnu/packages/admin.scm, gnu/packages/aidc.scm, gnu/packages/algebra.scm,
gnu/packages/apr.scm, gnu/packages/avahi.scm, gnu/packages/backup.scm,
gnu/packages/base.scm, gnu/packages/calcurse.scm, gnu/packages/cdrom.scm,
gnu/packages/check.scm, gnu/packages/compression.scm, gnu/packages/cook.scm,
gnu/packages/crypto.scm, gnu/packages/cryptsetup.scm, gnu/packages/curl.scm,
gnu/packages/cyrus-sasl.scm, gnu/packages/databases.scm,
gnu/packages/doxygen.scm, gnu/packages/dwm.scm, gnu/packages/elf.scm,
gnu/packages/emacs.scm, gnu/packages/feh.scm, gnu/packages/file.scm,
gnu/packages/fish.scm, gnu/packages/flex.scm, gnu/packages/fltk.scm,
gnu/packages/fontutils.scm, gnu/packages/games.scm, gnu/packages/gcal.scm,
gnu/packages/gcc.scm, gnu/packages/geeqie.scm, gnu/packages/ghostscript.scm,
gnu/packages/gimp.scm, gnu/packages/gl.scm, gnu/packages/glib.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm,
gnu/packages/gperf.scm, gnu/packages/grub.scm, gnu/packages/gsasl.scm,
gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile.scm,
gnu/packages/hurd.scm, gnu/packages/icu4c.scm, gnu/packages/image.scm,
gnu/packages/imagemagick.scm, gnu/packages/irssi.scm, gnu/packages/kde.scm,
gnu/packages/libdaemon.scm, gnu/packages/libevent.scm,
gnu/packages/libidn.scm, gnu/packages/libusb.scm, gnu/packages/linux.scm,
gnu/packages/lout.scm, gnu/packages/lsh.scm, gnu/packages/lsof.scm,
gnu/packages/lua.scm, gnu/packages/maths.scm, gnu/packages/mcrypt.scm,
gnu/packages/mp3.scm, gnu/packages/netpbm.scm, gnu/packages/noweb.scm,
gnu/packages/ocaml.scm, gnu/packages/openssl.scm, gnu/packages/pcre.scm,
gnu/packages/pdf.scm, gnu/packages/pkg-config.scm,
gnu/packages/pretty-print.scm, gnu/packages/python.scm, gnu/packages/qt.scm,
gnu/packages/rsync.scm, gnu/packages/scheme.scm, gnu/packages/scrot.scm,
gnu/packages/sdl.scm, gnu/packages/skribilo.scm, gnu/packages/ssh.scm,
gnu/packages/stalonetray.scm, gnu/packages/tcl.scm, gnu/packages/tcsh.scm,
gnu/packages/telephony.scm, gnu/packages/texlive.scm, gnu/packages/tor.scm,
gnu/packages/valgrind.scm, gnu/packages/version-control.scm,
gnu/packages/vim.scm, gnu/packages/vpn.scm, gnu/packages/w3m.scm,
gnu/packages/web.scm, gnu/packages/wordnet.scm, gnu/packages/xiph.scm,
gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/packages/zile.scm,
gnu/packages/zip.scm, gnu/packages/zsh.scm [synopsis, description]: Adjust
according to lint checkers.
* gnu/packages/fltk.scm (fltk)[source]: Wrap long line in uri.
* /gnu/packages/xiph.scm (libogg, libtheora, vorbis-tools)[source]: Same.
2014-10-26 13:03:53 -05:00
ec322be248
gnu: Add ATLAS.
...
* gnu/packages/maths.scm (atlas): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-10-26 15:16:06 +01:00
3dcd78109c
gnu: pspp: Upgrade to 0.8.4.
...
* gnu/packages/maths.scm (pspp): Upgrade to 0.8.4.
2014-10-03 19:52:50 +02:00
182d6311c2
gnu: Add dionysus.
...
* gnu/packages/maths.scm (dionysus): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-09-29 00:16:28 +02:00
Ludovic Courtès