abc08cbae6
gnu: python-biom-format: Update to 2.1.6.
...
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.6.
[propagated-inputs]: Add python-pandas.
2017-05-21 15:42:08 +01:00
c522f57e22
gnu: python-future: Update to 0.16.0.
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* gnu/packages/python.scm (python-future): Update to 0.16.0.
2017-05-21 15:42:08 +01:00
1d0aa4d8c2
gnu: ccid: Update to 1.4.27.
...
* gnu/packages/security-token.scm (ccid): Update to 1.4.27.
2017-05-21 16:37:54 +02:00
20d2e1faa9
gnu: fio: Update to 2.20.
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* gnu/packages/benchmark.scm (fio): Update to 2.20.
[arguments]<#:phases>: Drop removed script from 'move-outputs' phase.
2017-05-21 16:33:42 +02:00
31044e6ff2
gnu: nano: Update to 2.8.4.
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* gnu/packages/nano.scm (nano): Update to 2.8.4.
2017-05-21 16:17:01 +02:00
18f61e002b
gnu: vim: Update to 8.0.0600.
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* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0600.
2017-05-21 14:34:45 +02:00
8b1ff6f0ab
gnu: vim-full: Disable failing test.
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* gnu/packages/vim.scm (vim-full)[arguments]<#:phases>: Add substitution.
2017-05-21 14:34:45 +02:00
718448e176
gnu: linux-libre: Update to 4.11.2.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.2.
(%linux-libre-hash): Update hash.
2017-05-21 02:03:32 -04:00
a08691dfbb
gnu: linux-libre: Remove CONFIG_SMC from x86 kernel configurations.
...
This removes support for the "shared memory communications over RDMA" (SMC-R)
networking protocol, which was added in 4.11 without the knowledge of the RDMA
maintainers, and which is thought to contain significant security flaws. For
details, see <https://lwn.net/Articles/723081 > and
<https://lwn.net/Articles/723070 >.
* gnu/packages/aux-files/linux-libre/4.11-x86_64.conf,
gnu/packages/aux-files/linux-libre/4.11-i686.conf: Disable CONFIG_SMC.
723# 0001-gnu-libevent-2.0-Add-fix-from-upstream.patch
2017-05-21 01:47:09 -04:00
519fd6c367
gnu: linux-libre@4.9: Update to 4.9.29.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.29.
2017-05-21 01:45:21 -04:00
ec8d69ebfe
gnu: linux-libre@4.4: Update to 4.4.69.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.69.
2017-05-21 01:44:25 -04:00
9f8d6eb24a
gnu: unionfs-fuse-static: Remove 'unionfsctl' executable.
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This avoids pulling in glibc & co. Fixes a regression introduced in
2f861edf5c
2017-05-21 01:14:51 +02:00
9a1bfe7648
vm: Increase default disk size to account for ESP partition.
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Fixes a test regression introduced by ecf5d53769
2017-05-21 01:07:12 +02:00
fda33e495b
gnu: ghostscript: Add TODO comment about bundled jbig2dec.
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* gnu/packages/ghostscript.scm (ghostscript): Add comment.
2017-05-20 16:26:29 -04:00
10cb88f85c
gnu: jbig2dec: Fix CVE-2017-{7885,7975,7976}.
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* gnu/packages/patches/jbig2dec-CVE-2017-7885.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7975.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7976.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jbig2dec)[source]: Use them.
2017-05-20 16:26:29 -04:00
fefd4c197f
gnu: pcsc-lite: Update to 1.8.21.
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* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.21.
2017-05-20 21:42:58 +02:00
12eecbf0bb
gnu: icedtea@3: Add aarch32-drop.
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* gnu/packages/java.scm (icedtea-8)[native-inputs]: Add aarch32-drop.
2017-05-20 14:57:22 -04:00
db531f734a
gnu: icedtea@3: Update to 3.4.0 [security fixes].
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Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.
* gnu/packages/java.scm (icedtea-8): Update to 3.4.0.
2017-05-20 14:57:22 -04:00
b17bd261b0
gnu: imagemagick: Update to 6.9.8-6.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.8-6.
2017-05-20 14:06:20 -04:00
82ce81ba06
gnu: guix: Add 'guile2.0-guix'.
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* gnu/packages/package-management.scm (guile2.0-guix): New variable.
2017-05-20 20:00:53 +02:00
74460d1121
gnu: libssh, guile-ssh: Add a "debug" output.
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* gnu/packages/ssh.scm (libssh)[outputs]: New field.
(guile-ssh)[outputs]: New field.
2017-05-20 19:49:36 +02:00
d30ce4a7e2
gnu: icedtea@2: Update to 2.6.10 [security fixes].
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Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.
* gnu/packages/java.scm (icedtea-7): Update to 2.6.10.
2017-05-19 21:40:26 -04:00
cc5a76a74c
gnu: Add loksh.
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* gnu/packages/shells.scm (loksh): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-20 02:42:04 +02:00
70f8242b13
gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}].
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* gnu/packages/ssh.scm (dropbear): Update to 2017.75.
2017-05-19 20:32:26 -04:00
1326166ebe
gnu: calibre: Don't create uninstaller.
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* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>. Add 'patch-source' phase.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
affaf98f77
gnu: calibre: Add exhaustive license list.
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* gnu/packages/ebook.scm (calibre): Add exhaustive license list.
(chmlib)[license]: Use license: prefix.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
9b7dcc2703
gnu: calibre: Add missing dependencies.
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* gnu/packages/ebook.scm (calibre)[inputs]: Add poppler, python2-dnspython,
and python2-pygments.
[arguments]: Remove old TODO comments. libwmf and psutil are no longer used.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
eeba7d3a07
gnu: calibre: Unbundle chardet.
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* gnu/packages/ebook.scm (calibre)[source]: Delete bundled chardet.
[inputs]: Add python2-chardet.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
b3399a0985
gnu: calibre: Unbundle liberation fonts.
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*gnu/packages/ebook.scm (calibre)[source]: Delete liberation .ttf files.
[native-inputs]: Add font-liberation.
[arguments]: Calibre still references the bundled fonts, so we install the
packaged fonts to the directory the bundled fonts would have been.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
29ec085170
gnu: calibre: Unbundle python2-markdown.
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* gnu/packages/ebook.scm (calibre)[snippet]: Replace python references to
bundled markdown with packaged. Remove markdown from source.
[inputs]: Add python2-markdown as a dependency.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
d94a99ec66
gnu: calibre: Import unbundle feedparser patch from debian.
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* gnu/packages/ebook.scm (calibre)[source]: Reference new patch file.
[inputs]: Add python2-feedparser as an input.
* gnu/packages/patches/calibre-use-packaged-feedparser.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:20 +02:00
7010d231db
gnu: calibre: Import dont-load-icons patch from debian.
...
* gnu/packages/patches/calibre-dont-load-remote-icons.patch: New file.
* gnu/packages/ebooks.scm (calibre)[source]: Add reference to patch file.
* gnu/local.mk (dist_path_DATA): Add it.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:20 +02:00
cd6171c1b4
gnu: calibre: Update to 2.85.1.
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* gnu/packages/ebooks.scm (calibre): Update to 2.85.1.
* gnu/packages/patches/calibre-drop-unrar.patch: Delete incompatible patch
file. Recreate debian patch file from the latest calibre git revision.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:20 +02:00
b55dd31660
system: Use Guile 2.2 rather than 2.0 in %BASE-PACKAGES.
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* gnu/system.scm (%base-packages): Change GUILE-2.0 to GUILE-2.2.
2017-05-19 23:38:52 +02:00
41fa164aa0
gnu: python-pyqt@4: Update to 4.12.
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* gnu/packages/qt.scm (python-pyqt-4): Update to 4.12.
[source]: Adjust URI to file rename.
2017-05-19 21:33:43 +02:00
5ac3a671d8
gnu: python-pyqt: Update to 5.8.2.
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* gnu/packages/qt.scm (python-pyqt): Update to 5.8.2.
2017-05-19 21:24:11 +02:00
f6da41b54d
gnu: python-sip: Update to 4.19.2.
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* gnu/packages/qt.scm (python-sip): Update to 4.19.2.
2017-05-19 21:24:11 +02:00
8ea98ee10c
doc: Update for UEFI systems.
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* doc/guix.texi (USB Stick Installation): Mention UEFI.
(Preparing for Installation): Add notes about EFI System Partition, and
mounting partitions before init.
(Proceeding with the Installation): Mention the GRUB-EFI package.
(Using the Configuration System): Lightweight desktop is now a UEFI system.
(GRUB Configuration): Expand on package field. Add indexes.
* gnu/system/examples/lightweight-desktop.tmpl: Adjust to native EFI configuration.
2017-05-19 13:52:49 +02:00
ecf5d53769
vm: Add UEFI loader to disk images.
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* gnu/build/vm.scm (install-efi): New procedure.
(initialize-hard-disk): Generate EFI blob when ESP is present.
* gnu/system/vm.scm (qemu-image): Append 40MiB EFI System Partition.
2017-05-19 12:59:25 +02:00
4d415f0c3c
vm: Support creating FAT partitions.
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* gnu/build/vm.scm (create-ext-file-system, create-fat-file-system): New procedures.
(format-partition): Use them. Error for unknown file systems.
* gnu/system/vm.scm (qemu-image): Include DOSFSTOOLS.
* gnu/system/linux-initrd.scm (base-initrd): Always add nls_is8859-1.ko.
2017-05-19 12:59:25 +02:00
01cc84dade
vm: Support arbitrary partition flags.
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* gnu/build/vm.scm (<partition>): Change BOOTABLE? to FLAGS.
(initialize-partition-table): Pass each flag to parted.
(initialize-hard-disk): Locate boot partition.
* gnu/system/vm.scm (qemu-image): Adjust partition flags.
2017-05-19 12:59:25 +02:00
e7fbd49132
gnu: guile-ssh: Fix potential double-free/use-after-free issue.
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Fixes <http://bugs.gnu.org/26976 >.
Reported by Mark H Weaver <mhw@netris.org>.
* gnu/packages/patches/guile-ssh-double-free.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it.
2017-05-19 10:50:20 +02:00
acf82a1152
gnu: btrfs-progs: Update to 4.11.
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* gnu/packages/linux.scm (btrfs-progs): Update to 4.11.
2017-05-18 18:55:11 +02:00
4d2e1d1442
gnu: mcelog: Update to 150.
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* gnu/packages/linux.scm (mcelog): Update to 150.
2017-05-18 18:55:11 +02:00
8cf6a63382
gnu: nano: Update to 2.8.3.
...
* gnu/packages/nano.scm (nano): Update to 2.8.3.
2017-05-18 19:13:10 +03:00
2b18ad054c
gnu: Add gemma.
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* gnu/packages/bioinformatics.scm (gemma): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-18 14:22:03 +02:00
f69c29f76d
gnu: Add emacs-helm-projectile.
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* gnu/packages/emacs.scm (emacs-helm-projectile): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-18 14:22:03 +02:00
03cc1cf35b
gnu: Add emacs-helm-swoop.
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* gnu/packages/emacs.scm (emacs-helm-swoop): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-18 14:22:03 +02:00
12e72d2a12
gnu: emacs-helm: Update to 2.7.0.
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* gnu/packages/emacs.scm (emacs-helm): Update to 2.7.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-18 14:22:03 +02:00
51ef4af6b3
gnu: emacs-async: Update to 1.9.2.
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* gnu/packages/emacs.scm (emacs-async): Update to 1.9.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-18 14:22:02 +02:00
Ben Woodcroft