acb6be4298
gnu: Add ruby-ascii85.
...
* gnu/packages/ruby.scm (ruby-ascii85): New variable.
2016-01-26 16:25:11 +10:00
f3e085a8d5
gnu: Add ruby-afm.
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* gnu/packages/ruby.scm (ruby-afm): New variable.
2016-01-26 16:22:17 +10:00
1f1d71e09f
gnu: Add ruby-rc4.
...
* gnu/packages/ruby.scm (ruby-rc4): New variable.
2016-01-26 16:21:05 +10:00
72ccbfe314
gnu: Add ruby-hashery.
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* gnu/packages/ruby.scm (ruby-hashery): New variable.
2016-01-26 16:19:41 +10:00
0832804ed5
gnu: Add ruby-rubytest-cli.
...
* gnu/packages/ruby.scm (ruby-rubytest-cli): New variable.
2016-01-26 16:17:01 +10:00
78bb471f37
gnu: Add ruby-lemon.
...
* gnu/packages/ruby.scm (ruby-lemon): New variable.
2016-01-26 16:15:24 +10:00
9273ee8f44
gnu: Add ruby-ae.
...
* gnu/packages/ruby.scm (ruby-ae): New variable.
2016-01-26 16:11:49 +10:00
120fc74b21
gnu: Add ruby-qed.
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* gnu/packages/ruby.scm (ruby-qed): New variable.
2016-01-26 16:06:10 +10:00
90fcedf220
gnu: Add ruby-brass.
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* gnu/packages/ruby.scm (ruby-brass): New variable.
2016-01-26 16:02:15 +10:00
7c8131c76b
gnu: Add ruby-rubytest.
...
* gnu/packages/ruby.scm (ruby-rubytest): New variable.
2016-01-26 15:59:39 +10:00
a78d62f432
gnu: sra-tools: Update to 2.5.7.
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* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.7.
2016-01-26 10:59:13 +10:00
fe91666b79
gnu: ncbi-vdb: Update to 2.5.7.
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gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.7.
2016-01-26 10:59:13 +10:00
d3b39bc231
gnu: ngs-sdk: Update to 1.2.3.
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gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.3.
2016-01-26 10:59:13 +10:00
0833d0c025
gnu: aspell-dict-en: Update to 2016.01.19-0.
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* gnu/packages/aspell.scm (aspell-dict-en): Update to 2016.01.19-0.
2016-01-25 22:11:47 +03:00
8581f4c195
gnu: Add python-efl.
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* gnu/packages/enlightenment.scm (python-efl, python2-efl): New variables.
2016-01-25 11:41:23 +02:00
2259442b15
gnu: cmocka: New variable.
...
* gnu/packages/check.scm (cmocka): New variable.
2016-01-25 11:39:42 +02:00
23f3cbb8de
gnu: Add pixz.
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* gnu/packages/compression.scm (pixz): New variable.
2016-01-25 18:45:33 +10:00
f6afc48008
gnu: grue-hunter: Use 'https' URL.
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* gnu/packages/grue-hunter.scm (grue-hunter): Use 'https' URL.
2016-01-25 00:11:22 +01:00
bcadaf0050
gnu: Add sortmerna.
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* gnu/packages/bioinformatics.scm (sortmerna): New variable.
2016-01-25 08:35:11 +10:00
447f3ae7c1
gnu: calibre: Update to 2.49.0.
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* gnu/packages/ebook.scm (calibre): Update to 2.49.0.
2016-01-24 20:12:05 +01:00
541ed7b030
gnu: cross-gcc-arguments: Enable C++, disable building of libstdc++-v3.
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* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Disable
building libstdc++-v3 and enable building C++ compiler.
2016-01-24 14:25:20 +01:00
a763ce7da9
gnu: Add Qtractor.
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* gnu/packages/music.scm (qtractor): New variable.
2016-01-24 14:20:52 +01:00
8ddc5d5723
gnu: yoshimi: Update to 1.3.8.2.
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* gnu/packages/music.scm (yoshimi): Update to 1.3.8.2.
2016-01-24 14:19:29 +01:00
6b6a62dd05
gnu: privoxy: Update to 3.0.24.
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* gnu/packages/tor.scm (privoxy): Update to 3.0.24.
2016-01-24 09:20:55 +02:00
be866fb13e
gnu: tor: Update to 0.2.7.6.
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* gnu/packages/tor.scm (tor): Update to 0.2.7.6.
2016-01-24 07:21:33 +02:00
17206f72ed
gnu: myrepos: Update to 1.20160123.
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* gnu/packages/version-control.scm (myrepos): Update to 1.20160123.
2016-01-24 07:04:05 +02:00
4c73302739
gnu: nano: Update to 2.5.1.
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* gnu/packages/nano.scm (nano): Update to 2.5.1.
2016-01-24 06:46:01 +02:00
c5184468f5
build: container: Make 'unprivileged-user-namespace-supported?' more robust.
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* gnu/build/linux-container.scm (unprivileged-user-namespace-supported?): Only
read and check the first character, to cope with a possible newline in the
(pseudo-)file.
2016-01-23 18:44:03 -05:00
fe17fb4a2c
gnu: letsencrypt and acme: Update to 0.2.0.
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These packages should be updated together.
* gnu/packages/tls.scm (letsencrypt): Update to 0.2.0.
(acme): Update to 0.2.0.
2016-01-23 17:39:08 -05:00
21565719e5
gnu: claws-mail: Update to 3.13.2.
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* gnu/packages/mail.scm (claws-mail): Update to 3.13.2.
2016-01-23 20:13:31 +02:00
3a40a92c73
gnu: Add cufflinks.
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* gnu/packages/bioinformatics.scm (cufflinks): New variable.
2016-01-23 09:15:11 +01:00
94ce537eac
gnu: Add TopHat.
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* gnu/packages/bioinformatics.scm (tophat): New variable.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-23 08:53:10 +01:00
3062d750b4
gnu: star: Update to 2.5.1b.
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* gnu/packages/bioinformatics.scm (star): Update to 2.5.1b.
[source]: Remove bundled htslib sources and pre-built binaries.
[arguments]: Add phase "do-not-use-bundled-htslib".
[inputs]: Add "htslib".
2016-01-23 08:40:14 +01:00
c0266e8d03
gnu: star: Use "modify-phases" syntax.
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* gnu/packages/bioinformatics.scm (star)[arguments]: Use "modify-phases"
syntax.
2016-01-23 08:40:14 +01:00
ebf89f134c
gnu: fuse: Update to 2.9.5 [fixes CVE-2016-1233].
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* gnu/packages/linux.scm (fuse): Update to 2.9.5.
2016-01-22 09:00:34 +02:00
b6d937d99e
gnu: american-fuzzy-lop: Update to 1.96b.
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* gnu/packages/debug.scm (american-fuzzy-lop): Update to 1.96b.
[arguments]: Create symbolic link to custom qemu, rather than copying.
2016-01-21 23:54:48 -06:00
2d8211ab30
gnu: american-fuzzy-lop: Fix qemu configure flags.
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Fixes regression introduced in 06da1a6
2016-01-21 23:54:48 -06:00
765973cd65
gnu: Add iftop.
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* gnu/packages/admin.scm (iftop): New variable.
2016-01-21 20:21:19 -05:00
c2af02602a
Revert "gnu: Add iftop."
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This reverts commit 45da8c6dd1
2016-01-21 20:11:21 -05:00
45da8c6dd1
gnu: Add iftop.
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* gnu/packages/admin.scm (iftop): New variable.
2016-01-21 18:11:12 -05:00
6b779207ee
system: grub: Search root device by label or UUID if possible.
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Fixes <http://bugs.gnu.org/22281 >.
Reported by Christopher Allan Webber <cwebber@dustycloud.org>.
* gnu/system/grub.scm (eye-candy): Add 'root-fs' parameter. Replace
'search --file' command in the output with whatever 'grub-root-search'
returns.
(grub-root-search): New procedure.
(grub-configuration-file): Add 'store-fs' parameter. Use
'grub-root-search' instead of hard-coded 'search --file' commands.
* gnu/system.scm (store-file-system,
operating-system-store-file-system): New procedures.
(operating-system-grub.cfg): Use it, and adjust call to
'grub-configuration-file'.
* tests/system.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
2016-01-22 00:02:52 +01:00
3738d8700f
gnu: ffmpeg: Update to 2.8.5.
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* gnu/packages/video.scm (ffmpeg): Update to 2.8.5.
2016-01-21 10:30:21 -05:00
0c0207a93b
gnu: gajim: Update to 0.16.5 [fixes CVE-2015-8688].
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* gnu/packages/messaging.scm (gajim): Update to 0.16.5.
[arguments]: Disable tests.
2016-01-21 10:24:44 -05:00
6c92d8dd35
gnu: bind-utils: Build and install "nsupdate".
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* gnu/packages/dns.scm (bind-utils)[arguments]: Build and install
"nsupdate" executable.
2016-01-21 15:53:35 +01:00
bd0eb6672b
gnu: bind-utils: Generalize "build" and "install" phases.
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* gnu/packages/dns.scm (bind-utils)[arguments]: Generalize "build" and
"install" phases.
2016-01-21 15:53:35 +01:00
b2844d8f14
gnu: bind-utils: Use "modify-phases" syntax.
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* gnu/packages/dns.scm (bind-utils): Use "modify-phases" syntax.
2016-01-21 15:53:35 +01:00
897092875e
gnu: r-qtl: Update to 1.38-4.
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* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.38-4.
2016-01-21 11:16:12 +01:00
1207a0c33e
gnu: libxmp: Update to 4.3.10.
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* gnu/packages/audio.scm (libxmp): Update to 4.3.10.
2016-01-21 00:44:46 -05:00
7ed0145712
gnu: Add NQC.
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* gnu/packages/lego.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-20 22:06:27 -06:00
feb767b23c
gnu: Add transmission-remote-cli.
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* gnu/packages/bittorrent.scm (transmission-remote-cli): New variable.
2016-01-20 20:19:46 -05:00
Ben Woodcroft