adba64662c
gnu: Add python-cypari2 and python2-cypari2.
...
* gnu/packages/sagemath.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register new module.
2019-01-31 14:58:47 +01:00
11d19ca236
gnu: QEMU: Fix CVE-2018-16872 and CVE-2019-6778.
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* gnu/packages/patches/qemu-CVE-2018-16872.patch,
gnu/packages/patches/qemu-CVE-2019-6778.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
2019-01-31 14:35:48 +01:00
a382860bd4
gnu: rss-bridge: Update to 2019-01-13.
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* gnu/packages/web.scm (rss-bridge): Update to 2019-01-13.
[source]: Use git-fetch.
[native-inputs]: Remove gzip and tar.
2019-01-31 16:27:39 +05:30
e1c3ffcfcd
gnu: scdoc: Update to 1.8.1.
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* gnu/packages/man.scm (scdoc): Update to 1.8.1.
2019-01-31 10:09:29 +01:00
2e484e78cd
gnu: mame: Update to 0.206.
...
* gnu/packages/emulators.scm (mame): Update to 0.206.
2019-01-30 22:59:44 +01:00
0dcea35d9a
gnu: Add lhasa.
...
* gnu/packages/compression.scm (lhasa): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-01-30 21:24:01 +01:00
ba123b6dda
gnu: star: Update to 2.7.0a.
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* gnu/packages/bioinformatics.scm (star): Update to 2.7.0a.
2019-01-30 15:44:47 +01:00
24886c1389
gnu: icecat: Update to 60.5.0-guix1 [security-fixes].
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Includes fixes for CVE-2018-18500, CVE-2018-18501, and CVE-2018-18505.
* gnu/packages/gnuzilla.scm (icecat): Update to 60.5.0-guix1.
[version]: Use %icecat-version.
[source]: Inherit from 'icecat-source'. Remove obsolete patches.
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch,
gnu/packages/patches/icecat-use-system-graphite2+harfbuzz.patch,
gnu/packages/patches/icecat-use-system-media-libs.patch: Adapt to 60.5.0.
2019-01-29 22:29:42 -05:00
948879eeda
gnu: icecat: Add icecat-source.
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* gnu/packages/gnuzilla.scm (computed-origin-method): New variable.
(%icecat-version, icecat-source): New variables.
* gnu/packages/patches/icecat-makeicecat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-01-29 22:29:40 -05:00
286bea0dba
gnu: clang-runtime@3.5: Fix compilation on glibc 2.28.
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Reported by zimoun <zimon.toutoune@gmail.com>.
* gnu/packages/llvm.scm (clang-runtime-3.5): Add
"clang-3.5-libsanitizer-ustat-fix.patch".
2019-01-29 23:46:33 +01:00
b552e307ed
gnu: guile-commonmark: Update to 0.1.2.
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* gnu/packages/guile-xyz.scm (guile-commonmark): Update to 0.1.2.
[source](modules, snippet): Remove.
2019-01-29 23:46:33 +01:00
db9771a9a9
gnu: guile-git: Update to 0.2.0.
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* gnu/packages/guile.scm (guile-git): Update to 0.2.0.
2019-01-29 23:46:33 +01:00
f5eb570c59
gnu: Mutt: Update to 1.11.2.
...
* gnu/packages/mail.scm (mutt): Update to 1.11.2.
2019-01-29 15:52:33 -05:00
631337063e
gnu: Add texlive-latex-beamer.
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* gnu/packages/tex.scm (texlive-latex-beamer): New variable.
2019-01-29 17:18:23 +01:00
1d4c2dabef
gnu: texlive-latex-seminar: Copy files to output.
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* gnu/packages/tex.scm (texlive-latex-seminar)[build-system]: Use
trivial-build-system.
[arguments]: Copy files to output.
2019-01-29 14:07:03 +01:00
9e532ae22a
gnu: clojure: Update to 1.10.0.
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* gnu/packages/clojure.scm (clojure): Update to 1.10.0.
[source]: Use 'git-fetch'.
2019-01-29 10:59:06 +01:00
b412ddcb1a
gnu: kitty: Update to 0.13.3.
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* gnu/packages/terminals.scm (kitty): Update to 0.13.3.
[inputs]: Replace python2-pygments with python-pygments. Add wayland.
[arguments]: Add 'hard-code-libegl phase.
2019-01-29 10:10:06 +01:00
23c2598233
gnu: x265: Update to 3.0.
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* gnu/packages/video.scm (x265): Update to 3.0.
[source]: Remove patch.
* gnu/packages/patches/x265-detect512-all-arches.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-01-29 10:07:58 +02:00
db7c901af1
gnu: guix: Update to 4bddd12.
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* gnu/packages/package-management.scm (guix): Update to 4bddd12
2019-01-28 23:52:20 +01:00
66abc619d5
gnu: Add missing file.
...
* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/installer/newt/user.scm.
2019-01-28 23:28:46 +01:00
95bc85b7da
gnu: Add openjdk 11.
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* gnu/packages/java.scm (openjdk11): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-28 23:15:27 +01:00
4bddd12ad5
gnu: fish: Use fish-foreign-env to source /etc/profile.
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* gnu/packages/shells.scm (fish): Use fish-foreign-env to source /etc/profile
when user logs in.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-28 23:13:41 +01:00
1d962fc0a1
gnu: Add fish-foreign-env.
...
* gnu/packages/shells.scm (fish-foreign-env): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-28 23:13:41 +01:00
e1dba5bea0
gnu: fish: Update to 3.0.0.
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* gnu/packages/shells.scm (fish): Update to 3.0.0.
[source]: Remove dead URL.
[inputs]: Remove bc. Replace python-wrapper with python.
[arguments]: Remove configure-flags. Enable fish to source
/etc/fish/config.fish. Enable completions, functions and configurations
in user's and system's guix profiles.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-28 23:13:41 +01:00
f15800946d
gnu: youtube-dl: Update to 2019.01.27.
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* gnu/packages/video.scm (youtube-dl): Update to 2019.01.27.
2019-01-28 23:13:40 +01:00
5a23696a47
gnu: fastcap: Fix build and use INVOKE.
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* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive-tiny
with a texlive-union including texlive-fonts-amsfonts.
[arguments]: Use INVOKE in build phases.
2019-01-28 20:30:20 +01:00
ad34338d1e
gnu: scons: Update to 3.0.3.
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Fixes <https://bugs.gnu.org/34236 >.
* gnu/packages/python-xyz.scm (scons): Update to 3.0.3.
[arguments]: Add "bootstrap" phase.
2019-01-28 20:09:51 +01:00
1d1e3676ba
gnu: r-genomicfeatures: Update to 1.34.2.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.2.
2019-01-28 16:27:35 +01:00
ea0eaf537a
gnu: r-variantannotation: Update to 1.28.10.
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* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.10.
2019-01-28 16:27:35 +01:00
df00ca25bc
gnu: r-rmpfr: Update to 0.7-2.
...
* gnu/packages/cran.scm (r-rmpfr): Update to 0.7-2.
2019-01-28 16:27:35 +01:00
61cb2e3133
gnu: r-waveslim: Update to 1.7.5.1.
...
* gnu/packages/cran.scm (r-waveslim): Update to 1.7.5.1.
2019-01-28 16:27:35 +01:00
0207ad9ee8
gnu: r-activity: Update to 1.2.
...
* gnu/packages/cran.scm (r-activity): Update to 1.2.
[propagated-inputs]: Remove r-overlap.
2019-01-28 16:27:35 +01:00
211628044e
gnu: r-emmeans: Update to 1.3.2.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.2.
2019-01-28 16:27:35 +01:00
62595ee342
gnu: r-th-data: Update to 1.0-10.
...
* gnu/packages/cran.scm (r-th-data): Update to 1.0-10.
2019-01-28 16:27:35 +01:00
ddd168ff32
gnu: r-acceptancesampling: Update to 1.0-6.
...
* gnu/packages/cran.scm (r-acceptancesampling): Update to 1.0-6.
2019-01-28 16:27:34 +01:00
7d4b98181a
gnu: r-vioplot: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-vioplot): Update to 0.3.0.
[propagated-inputs]: Add r-zoo.
2019-01-28 16:27:34 +01:00
b4b1a9440b
gnu: r-jomo: Update to 2.6-6.
...
* gnu/packages/cran.scm (r-jomo): Update to 2.6-6.
2019-01-28 16:27:34 +01:00
9e0162df85
gnu: r-fitdistrplus: Update to 1.0-14.
...
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.0-14.
2019-01-28 16:27:34 +01:00
fe24aa2a4f
gnu: r-colorspace: Update to 1.4-0.
...
* gnu/packages/cran.scm (r-colorspace): Update to 1.4-0.
2019-01-28 16:27:34 +01:00
b3578189aa
gnu: r-ggmap: Update to 2.6.2.
...
* gnu/packages/cran.scm (r-ggmap): Update to 2.6.2.
2019-01-28 16:27:34 +01:00
48246864b1
gnu: r-ranger: Update to 0.11.1.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.11.1.
2019-01-28 16:27:34 +01:00
56daae7b58
gnu: r-prabclus: Update to 2.2-7.
...
* gnu/packages/statistics.scm (r-prabclus): Update to 2.2-7.
2019-01-28 16:27:34 +01:00
f308d426fd
gnu: r-gplots: Update to 3.0.1.1.
...
* gnu/packages/statistics.scm (r-gplots): Update to 3.0.1.1.
2019-01-28 16:27:34 +01:00
69e9899a2f
gnu: r-hmisc: Update to 4.2-0.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 4.2-0.
2019-01-28 16:27:34 +01:00
19fdd77c07
gnu: r-purrr: Update to 0.3.0.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.0.
[propagated-inputs]: Remove r-tibble.
2019-01-28 16:27:34 +01:00
c21c5188f4
gnu: r-e1071: Update to 1.7-0.1.
...
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-0.1.
2019-01-28 16:27:34 +01:00
82dad63ef7
gnu: r-rcpparmadillo: Update to 0.9.200.7.0.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.7.0.
2019-01-28 16:27:34 +01:00
6d1db05086
gnu: r-openssl: Update to 1.2.1.
...
* gnu/packages/statistics.scm (r-openssl): Update to 1.2.1.
[native-inputs]: Add pkg-config.
[propagated-inputs]: Add r-askpass.
2019-01-28 16:27:34 +01:00
0550c2bf70
gnu: r-checkmate: Update to 1.9.1.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.9.1.
2019-01-28 16:27:34 +01:00
d0fb25d94a
gnu: r-data-table: Update to 1.12.0.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.12.0.
2019-01-28 16:27:34 +01:00
Andreas Enge