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Author SHA1 Message Date
Tobias Geerinckx-Rice 35e1a0f1a7
gnu: python-zope-component: Update to 4.3.0. 
* gnu/packages/python.scm (python-zope-component): Update to 4.3.0.
[source]: Use pypi-uri.
 2017-03-22 02:03:35 +01:00
Tobias Geerinckx-Rice c56ad5e291
gnu: python-atomicwrites: Update to 1.1.5. 
* gnu/packages/python.scm (python-atomicwrites): Update to 1.1.5.
 2017-03-22 02:03:34 +01:00
Tobias Geerinckx-Rice 4c4d4df393
gnu: python-texttable: Update to 0.8.7. 
* gnu/packages/python.scm (python-texttable): Update to 0.8.7.
 2017-03-22 02:03:34 +01:00
Tobias Geerinckx-Rice d5c183d134
gnu: python-feedgenerator: Update to 1.9. 
* gnu/packages/python.scm (python-feedgenerator): Update to 1.9.
 2017-03-22 02:03:34 +01:00
Tobias Geerinckx-Rice d25bee2600
gnu: python-wrapt: Update to 1.10.8. 
* gnu/packages/python.scm (python-wrapt): Update to 1.10.8.
[source]: Use pypi-uri.
 2017-03-22 02:03:33 +01:00
Tobias Geerinckx-Rice b9463fdba2
gnu: python-py: Update to 1.4.32. 
* gnu/packages/python.scm (python-py): Update to 1.4.32.
 2017-03-22 02:03:33 +01:00
Tobias Geerinckx-Rice 5095bc7d71
gnu: python-sphinx-cloud-sptheme: Update to 1.8.0. 
* gnu/packages/python.scm (python-sphinx-cloud-sptheme): Update to 1.8.0.
 2017-03-22 02:03:33 +01:00
Tobias Geerinckx-Rice 9e59478f8d
gnu: python-wcwidth: Update to 0.1.7. 
* gnu/packages/python.scm (python-wcwidth): Update to 0.1.7.
[source]: Use pypi-uri.
 2017-03-22 02:03:32 +01:00
Tobias Geerinckx-Rice 4ffbe8c6d7
gnu: python-markdown: Update to 2.6.8. 
* gnu/packages/python.scm (python-markdown): Update to 2.6.8.
 2017-03-22 02:03:32 +01:00
Leo Famulari a9681c74ca
gnu: python-pillow: Fix test failures with freetype-2.7. 
* gnu/packages/patches/python-pillow-freetype-2.7-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pillow, python2-pillow)[source]: Use it.
 2017-03-21 16:20:10 -04:00
Ricardo Wurmus 4f9998c66f
gnu: snakemake: Add runtime dependencies. 
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-wrapt and
python-requests.
 2017-03-20 15:13:19 +01:00
Arun Isaac 315944a393
gnu: Add python-pylint. 
* gnu/packages/python.scm (python-pylint, python2-pylint): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:31 +01:00
Arun Isaac 61550dedf3
gnu: Add python2-coverage-test-runner. 
* gnu/packages/python.scm (python2-coverage-test-runner): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:31 +01:00
Arun Isaac 23db3fc67d
gnu: Add python-configparser. 
* gnu/packages/python.scm (python-configparser, python2-configparser): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:30 +01:00
Arun Isaac 965a083ed2
gnu: Add python2-backports-functools-lru-cache. 
* gnu/packages/python.scm (python2-backports-functools-lru-cache): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:30 +01:00
Arun Isaac 6ba0af7960
gnu: Add python-isort. 
* gnu/packages/python.scm (python-isort, python2-isort): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:30 +01:00
Arun Isaac d5ef113c05
gnu: Add python-astroid. 
* gnu/packages/python.scm (python-astroid, python2-astroid): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-20 00:40:30 +01:00
Mark H Weaver f67337e23e
Merge branch 'master' into core-updates 2017-03-19 18:52:12 -04:00
Ludovic Courtès 5927a843b4
gnu: python-minimal@2: Add dependencies on libffi and zlib. 
* gnu/packages/python.scm (python2-minimal)[inputs]: Add LIBFFI and ZLIB.
[arguments]: Remove.
 2017-03-19 23:42:57 +01:00
Ricardo Wurmus ef71ed8ffa
gnu: snakemake: Update to 3.11.2. 
* gnu/packages/python.scm (snakemake): Update to 3.11.2.
 2017-03-17 10:14:03 +01:00
Ricardo Wurmus 2d7c4ae3ee
gnu: r: Rename to r-minimal. 
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus aeb64f3cb2
gnu: r: Do not build recommended packages. 
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
 2017-03-17 10:14:02 +01:00
Efraim Flashner 4cacd87e4d
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-16 13:11:28 +02:00
Tobias Geerinckx-Rice 9186216268
gnu: python-publicsuffix2: Update to 2.20160818. 
* gnu/packages/python.scm (python-publicsuffix2): Update to 2.20160818.
 2017-03-16 05:44:02 +01:00
Tobias Geerinckx-Rice 192b887a03
gnu: awscli: Update to 1.11.63. 
* gnu/packages/python.scm (awscli): Update to 1.11.63.
 2017-03-16 05:44:01 +01:00
Tobias Geerinckx-Rice d93985fe22
gnu: python-botocore: Update to 1.5.26. 
* gnu/packages/python.scm (python-botocore): Update to 1.5.26.
 2017-03-16 05:44:01 +01:00
Tobias Geerinckx-Rice 70fc93cb28
gnu: python-ptyprocess: Update to 0.5.1. 
* gnu/packages/python.scm (python-ptyprocess): Update to 0.5.1.
 2017-03-16 05:44:01 +01:00
Marius Bakke 4b7e5c1131
Merge branch 'master' into core-updates 2017-03-15 17:52:26 +01:00
Efraim Flashner 27bf00e691
gnu: python-waf: Update to 1.9.8. 
* gnu/packages/python.scm (python-waf, python2-waf): Update to 1.9.8.
[home-page]: Use https.
 2017-03-15 13:08:56 +02:00
Ludovic Courtès 28958b646f
gnu: python-parsedatetime: Update to 2.3. 
Version 2.1 was apparently time-sensitive and started failing like this:

  ======================================================================
  FAIL: testFloat (tests.TestDelta.test)
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/tmp/guix-build-python2-parsedatetime-2.1.drv-0/parsedatetime-2.1/tests/TestDelta.py", line 64, in testFloat
      self.cal.parse('1.4 months ago', self.source), months=-1.4)
    File "/tmp/guix-build-python2-parsedatetime-2.1.drv-0/parsedatetime-2.1/tests/TestDelta.py", line 37, in assertDelta
      self.assertTrue(diff < 0.05, '%s is not less than 0.05' % diff)
  AssertionError: 0.0666666666667 is not less than 0.05

  ----------------------------------------------------------------------

* gnu/packages/python.scm (python-parsedatetime): Update to 2.3.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
[propagated-inputs]: New field.
 2017-03-14 11:18:16 +01:00
Leo Famulari 49c2a46e74
gnu: python@2.7: Update to 2.7.13 
* gnu/packages/python.scm (python-2.7): Update to 2.7.13.
 2017-03-14 02:45:23 -04:00
Leo Famulari dc5cec21f2
gnu: python@2.7: Fix getentropy() calls on kernels < 3.17. 
* gnu/packages/patches/python-2.7-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-2.7)[source]: Use it.
 2017-03-14 02:45:23 -04:00
Efraim Flashner 3f9543aee1
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-13 23:08:49 +02:00
Leo Famulari 7cb68a3cb3
gnu: Remove python-3.4. 
* gnu/packages/python.scm (python-3.4): Remove variable.
* gnu/packages/patches/python-3.4-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-03-13 15:33:54 -04:00
humanitiesNerd a71c863834
gnu: Add python-flask-login. 
* gnu/packages/python.scm (python-flask-login, python2-flask-login): New
variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-13 19:36:56 +01:00
humanitiesNerd 78c5566365
gnu: Add python-flask-htmlmin. 
* gnu/packages/python.scm (python-flask-htmlmin, python2-flask-htmlmin): New
variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-13 19:36:55 +01:00
humanitiesNerd 35db2d3cb7
gnu: Add python-htmlmin. 
* gnu/packages/python.scm (python-htmlmin, python2-htmlmin): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-13 19:36:54 +01:00
Marius Bakke e4d34cd0f0
gnu: python@3.5: Fix getentropy() calls on kernels < 3.17. 
* gnu/packages/patches/python-3.5-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.5, python-minimal, python-minimal-wrapper,
python-wrapper)[source]: Use it.
 2017-03-12 18:40:56 +01:00
Marius Bakke 343cee8af3
gnu: python@3.5: Update to 3.5.3. 
* gnu/packages/python.scm (python-3.5, python-minimal, python-minimal-wrapper,
python-wrapper): Update to 3.5.3.
* gnu/packages/patches/python-fix-tests.patch: Adjust patch context.
* gnu/packages/patches/python-3.5-fix-tests.patch: Likewise. Patch one new test.
 2017-03-12 18:40:56 +01:00
Arun Isaac b6b2ca5d19
gnu: Add python2-larch. 
* gnu/packages/python.scm (python2-larch): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 17:11:03 +01:00
Arun Isaac c220f0b474
gnu: Add python2-tracing. 
* gnu/packages/python.scm (python2-tracing): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 17:09:17 +01:00
Arun Isaac 77e9941160
gnu: Add python2-ttystatus. 
* gnu/packages/python.scm (python2-ttystatus): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 16:53:23 +01:00
Arun Isaac 33e9490ca1
gnu: Add python2-cliapp. 
* gnu/packages/python.scm (python2-cliapp): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-09 16:52:53 +01:00
Marius Bakke 6741676911
gnu: python-numpy-documentation: Use full git commit hash in submodule. 
* gnu/packages/python.scm (python-numpy-documentation,
python2-numpy-documentation)[native-inputs]: Update hash of
SCIPY-SPHINX-THEME. Fix indentation of a line.
 2017-03-09 16:39:09 +01:00
Marius Bakke 63d62305c3
gnu: Remove obsolete numpy comment. 
* gnu/packages/python.scm: Remove comment.
 2017-03-09 16:39:08 +01:00
Ludovic Courtès e90e0fad1b
Merge branch 'master' into core-updates 2017-03-09 16:35:41 +01:00
Marius Bakke b03ee02f0d
gnu: python-pandas: Fix build on 32-bit. 
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pandas, python2-pandas): Use it.
 2017-03-08 18:04:23 +01:00
Marius Bakke ce7911ddae
gnu: Add python-faker. 
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Adjust
paths. Also rename to ...
* gnu/packages/patches/python-faker-fix-build-32bit.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python.scm (python-faker, python2-faker): New variables.
(python-fake-factory)[properties]: Superseded by PYTHON-FAKER.
(python2-fake-factory)[properties]: Superseded by PYTHON2-FAKER.
(python-orator, python2-orator)[propagated-inputs]: Replace
PYTHON-FAKE-FACTORY with PYTHON-FAKER.
 2017-03-08 18:00:43 +01:00
Thomas Danckaert 1eaaea41e5
gnu: python-matplotlib-documentation: Fix build. 
* gnu/packages/python.scm (python-matplotlib-documentation)[native-inputs]:
Add python-mock and graphviz.
[arguments]: Use separate build and install phases; correctly set latex paper size.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-08 17:39:00 +01:00
Pjotr Prins d6abd094fc
gnu: python-rpy2: Propagate python2-singledispatch. 
* gnu/packages/python.scm (python-rp2)[native-inputs]: Rename to...
[propagated-inputs]: ... this.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-03-07 18:19:51 +01:00
Thomas Danckaert ba062b3ec4
gnu: python-colorspacious: Run tests. 
* gnu/packages/python.scm (python-colorspacious,
python2-colorspacious)[native-inputs]: Add python-nose.
[arguments]: Add custom 'check phase which runs nosetests.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 23:51:23 +01:00
Thomas Danckaert 5eefa50abd
gnu: Remove python-sphinx-1.2.3. 
* gnu/packages/python.scm (python-sphinx-1.2.3, python2-sphinx-1.2.3): Remove variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 23:28:10 +01:00
Marius Bakke 8e08604814
gnu: python-pandas: Update to 0.19.2. 
* gnu/packages/python.scm (python-pandas, python2-pandas): Update to 0.19.2.
[source]: Use 'pypi-uri'.
 2017-03-06 23:24:03 +01:00
Thomas Danckaert 4535a93adb
gnu: python-matplotlib: Update to 2.0.0. 
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Update to
2.0.0.
[source]: Remove Tk backend patch, use Github instead of Sourceforge.
[outputs]: Remove "doc" output.
[inputs]: Add python-pyqt.
[propagated-inputs]: Add python-cycler.
[native-inputs]: Remove python-sphinx, python-numpydoc, texlive and texinfo.
(python2-matplotlib)[native-inputs]: Add python2-functools32 and
python2-subprocess32.
(python-matplotlib-documentation, python2-matplotlib-documentation): New
variables.
* gnu/packages/patches/matplotlib-setupext-tk.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 23:22:22 +01:00
Marius Bakke 550bd98b41
gnu: Add python2-subprocess32. 
* gnu/packages/python.scm (python2-subprocess32): New variable.
* gnu/packages/patches/python2-subprocess32-disable-input-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-03-06 23:21:34 +01:00
Thomas Danckaert 7ccb71e0ea
gnu: python-numpy: Update to 1.12.0. 
* gnu/packages/python.scm (python-numpy): Update to 1.12.0.
  [source]: Use github instead of sourceforge.
  [native-inputs]: Add python-cython.

  To simplify the handling of dependency cycles (numpy documentation depends
  on matplotlib, which depends on numpy), we split out the documentation into
  a separate package:
  (python-numpy-bootstrap, python2-numpy-bootstrap): Remove variables.
  (python-numpy-documentation, python2-numpy-documentation): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 23:21:06 +01:00
Troy Sankey 5b1f31ffcf
gnu: python-setuptools-scm: Update to 1.15.0. 
* gnu/packages/python.scm (python-setuptools-scm): Update to 1.15.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-03-06 13:55:37 +01:00
Marius Bakke c0446791bd
gnu: python2-backports-shutil-get-terminal-size: Enable tests. 
* gnu/packages/python.scm
(python2-backports-shutil-get-terminal-size)[arguments]: Replace 'check' phase
with custom command.
[native-inputs]: Add PYTHON2-PYTEST.
 2017-03-06 13:22:51 +01:00
Thomas Danckaert fb25d348dd
gnu: python-ipython: Update to 5.2.2. 
* gnu/packages/python.scm (python-ipython): Update to 5.2.2.
[propagated-inputs]: Add pyhon-prompt-toolkit and python-nbformat.
(python2-ipython) [arguments]: Enable tests.
[propagated-inputs]: Add python2-backports-shutil-get-terminal-size.
[native-inputs]: Add graphviz.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 04:35:00 +01:00
Thomas Danckaert 350932536a
gnu: python-scipy: Update to 0.18.1. 
* gnu/packages/python.scm (python-scipy): Update to 0.18.1.
[source]: Use github instead of sourceforge.
[native-inputs]: Add python-cython.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 03:35:26 +01:00
Thomas Danckaert b320f7bf06
gnu: python-testpath: Fix library location for python2 version. 
* gnu/packages/python.scm (python-testpath)[arguments]: Install module in the proper
"lib/pythonx.y" location for all Python versions.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 03:33:39 +01:00
Thomas Danckaert 2aa6d3aeeb
gnu: Add python-colorspacious. 
* gnu/packages/python.scm (python-colorspacious, python2-colorspacious): New
variables.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 03:24:29 +01:00
Thomas Danckaert ec07421332
gnu: Add python2-backports-shutil-get-terminal-size. 
* gnu/packages/python.scm (python2-backports-shutil-get-terminal-size): New
variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-03-06 03:22:30 +01:00
Marius Bakke 3f98071ac5
Merge branch 'python-tests' 2017-03-03 16:55:43 +01:00
Leo Famulari da5db9880e
gnu: python-requests: Update to 2.13.0. 
* gnu/packages/python.scm (python-requests, python2-requests): Update to 2.13.0.
 2017-03-03 04:29:55 -05:00
ng0 a80488c204
gnu: Add python-pykka. 
* gnu/packages/python.scm (python-pykka): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-02 14:02:00 -05:00
ng0 de95925041
gnu: Add python-eventlet. 
* gnu/packages/python.scm (python-eventlet): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-03-02 14:02:00 -05:00
Thomas Danckaert d5a9783999
gnu: python-netcdf4: Update to 1.2.7. 
* gnu/packages/python.scm (python-netcdf4, python2-netcdf4): Update to 1.2.7.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-02-27 14:55:39 +01:00
Marius Bakke 8779987bba
Merge branch 'master' into python-tests 2017-02-27 12:42:22 +01:00
Marius Bakke 154d0016b5
Revert "gnu: python2-fastlmm: Update to 0.2.26." 
This reverts commit 594358f5b6.
 2017-02-24 21:36:07 +01:00
Marius Bakke 3b86a385db
gnu: python-passlib: Update to 1.7.1. 
* gnu/packages/python.scm (python-passlib, python2-passlib): Update to 1.7.1.
 2017-02-24 19:44:10 +01:00
Marius Bakke 42945fb58c
gnu: python-fake-factory: Fix build on 32bit. 
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-fake-factory, python2-fake-factory)[source]:
Use it.
 2017-02-24 18:55:29 +01:00
Efraim Flashner fd61591850
gnu: python: Remove failing test on aarch64. 
* gnu/packages/python.scm (python-3.5)[source]: Add snippet removing
test that fails on aarch64.
 2017-02-21 21:14:57 +02:00
Efraim Flashner d15432ca9e
Merge remote-tracking branch 'origin/master' into core-updates 2017-02-20 12:56:14 +02:00
Marius Bakke 361d982ce3
gnu: Add python-cycler. 
* gnu/packages/python.scm (python-cycler, python2-cycler): New variables.
 2017-02-19 23:29:57 +01:00
Marius Bakke dc027d4014
gnu: python-pyicu: Fix build. 
* gnu/packages/python.scm (python-pyicu, python2-pyicu)[arguments]: New
field. Add phase to delete locale-dependent test.
 2017-02-19 01:20:39 +01:00
Marius Bakke 4d25c486a5
gnu: python-scikit-learn: Fix test failure. 
* gnu/packages/python.scm (python-scikit-learn,
python2-scikit-learn)[arguments]: Use 'modify-phases'. Move 'check' phase
after 'install' and incorporate 'set-HOME' phase.
 2017-02-19 01:19:33 +01:00
Marius Bakke 9200fe14f7
gnu: python-scipy: Declare python2-variant. 
This is a followup to a50e030141.

* gnu/packages/python.scm (python-scipy)[properties]: New field.
 2017-02-19 01:19:33 +01:00
Marius Bakke 2c1cad7ad2
gnu: python-flake8-polyfill: Enable tests. 
* gnu/packages/python.scm (python-flake8-polyfill,
python2-flake8-polyfill)[native-inputs]: Add PYTHON-FLAKE8, PYTHON-MOCK,
PYTHON-PYCODESTYLE and PYTHON-PYTEST. New field.
[arguments]: Replace 'check' phase with custom command.
 2017-02-19 01:19:33 +01:00
Marius Bakke d296d30013
gnu: python-flask-wtf: Drop failing test. 
* gnu/packages/python.scm (python-flask-wtf, python2-flask-wtf)[arguments]:
Add phase to delete file that needs network access.
 2017-02-19 01:19:33 +01:00
Marius Bakke fffcd8b829
gnu: python-pbkdf2: Fix tests. 
* gnu/packages/python.scm (python-pbkdf2)[arguments]: Replace 'check' phase
with custom command.
 2017-02-19 01:19:33 +01:00
Marius Bakke a10b9810c6
gnu: python-sphinx: Propagate python-requests. 
* gnu/packages/python.scm (python-sphinx)[native-inputs]: Move PYTHON-REQUESTS
to ...
[propagated-inputs]: ... here.
 2017-02-19 01:19:32 +01:00
Danny Milosavljevic a1e3ed6e8b
gnu: python-pbr: Support python-sphinx>=1.2.1. 
* gnu/packages/patches/python-pbr-fix-man-page-support.patch: New file.
* gnu/packages/python.scm (python-pbr-minimal): Use the new patch file.
 2017-02-18 16:43:37 +01:00
Leo Famulari b611d01827
gnu: python-icalendar: Update to 3.11.3. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.3.
 2017-02-15 13:03:22 -05:00
Marius Bakke 6925cd788b
gnu: python-qrcode: Disable tests. 
* gnu/packages/python.scm (python-qrcode, python2-qrcode)[arguments]: New field.
 2017-02-15 09:23:01 +01:00
Marius Bakke a31e2f1a56
gnu: python-sphinx-cloud-sptheme: Explicitly disable tests. 
* gnu/packages/python.scm (python-sphinx-cloud-sptheme,
python2-sphinx-cloud-sptheme)[arguments]: New field.
 2017-02-15 09:15:20 +01:00
Marius Bakke 5b3c3d4b5a
gnu: python-sphinx-repoze-autointerface: Disable tests. 
* gnu/packages/python.scm (python-sphinx-repoze-autointerface,
python2-sphinx-repoze-autointerface)[arguments]: New field.
 2017-02-15 09:08:11 +01:00
Marius Bakke 9893cff376
gnu: python-sphinx-rtd-theme: Disable tests. 
* gnu/packages/python.scm (python-sphinx-rtd-theme,
python2-sphinx-rtd-theme)[arguments]: New field.
 2017-02-15 09:05:56 +01:00
Marius Bakke 3d2a544c69
gnu: python-sphinxcontrib-newsfeed: Disable tests. 
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed
python2-sphinxcontrib-newsfeed)[arguments]: New field.
 2017-02-15 09:03:05 +01:00
Marius Bakke e2cb140efb
gnu: python-sphinxcontrib-programoutput: Disable tests. 
* gnu/packages/python.scm (python-sphinxcontrib-programoutput,
python2-sphinxcontrib-programoutput)[arguments]: New field.
 2017-02-15 09:01:08 +01:00
Marius Bakke fe2ba3a888
gnu: python-tabulate: Disable tests. 
* gnu/packages/python.scm (python-tabulate)[arguments]: New field.
[native-inputs]: Remove.
[source]: Remove test substitution snippet.
 2017-02-15 08:28:03 +01:00
Eric Bavier d8768e3172
gnu: Add python-pypeg2. 
* gnu/packages/python.scm (python-pypeg2): New variable.
 2017-02-14 21:20:36 -06:00
Eric Bavier 4dcb135e7c
gnu: Add python-cssutils. 
* gnu/packages/python.scm (python-cssutils): New variable.
(python2-cssutils)[native-inputs]: Remove unused python2-mock.
 2017-02-14 21:14:02 -06:00
Marius Bakke 619bfd811e
gnu: awscli: Explicitly disable tests. 
* gnu/packages/python.scm (awscli)[arguments]: New field.
[native-inputs]: Remove.
 2017-02-14 16:09:49 +01:00
Marius Bakke a9c15e8b59
gnu: awscli: Update to 1.11.47. 
* gnu/packages/python.scm (awscli): Update to 1.11.47.
 2017-02-14 16:03:07 +01:00
Marius Bakke 0a7d96f8e4
gnu: python-botocore: Update to 1.5.10. 
* gnu/packages/python.scm (python-botocore, python2-botocore): Update to 1.5.10.
 2017-02-14 16:02:51 +01:00
Marius Bakke e435af5c2a
gnu: python-mako: Fix tests. 
* gnu/packages/python.scm (python-mako, python2-mako)[native-inputs]: Add
PYTHON-PYTEST.
 2017-02-14 00:49:49 +01:00
Marius Bakke ac72d3d2cc
gnu: python-openid-teams: Disable tests. 
* gnu/packages/python.scm (python-openid-teams,
python2-openid-teams)[arguments]: New field.
 2017-02-14 00:41:07 +01:00
Marius Bakke 019ccdb6c8
gnu: python-openid-cla: Disable tests. 
* gnu/packages/python.scm (python-openid-cla, python2-openid-cla)[arguments]:
New field.
 2017-02-14 00:41:06 +01:00
Marius Bakke bb6043fe9f
gnu: python-pygit2: Skip tests requiring network access. 
* gnu/packages/python.scm (python-pygit2, python2-pygit2)[source](patches):
New field.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-02-14 00:04:59 +01:00
Marius Bakke 97b62eb0bf
gnu: python-trollius-redis: Disable tests. 
* gnu/packages/python.scm (python-trollius-redis,
python2-trollius-redis)[arguments]: New field.
 2017-02-13 22:59:28 +01:00
Marius Bakke 424b1ae769
Merge branch 'master' into python-tests 2017-02-13 22:35:05 +01:00
Julien Lepiller 5220022a80
gnu: Add python-openid. 
* gnu/packages/python.scm (python-openid): New variable.
 2017-02-13 22:29:52 +01:00
Ludovic Courtès 768f0ac9dd
Merge branch 'master' into core-updates 2017-02-10 17:40:25 +01:00
Muriithi Frederick Muriuki 8fd6850436
gnu: Add python2-ruamel.ordereddict. 
* gnu/packages/python.scm (python2-ruamel.ordereddict): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-02-09 23:41:24 +01:00
Muriithi Frederick Muriuki 2299b13738
gnu: Add python-pycosat. 
* gnu/packages/python.scm (python-pycosat, python2-pycosat): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-02-09 23:41:24 +01:00
Muriithi Frederick Muriuki 2f4623dbd8
gnu: Add python-ddt. 
* gnu/packages/python.scm (python-ddt, python2-ddt): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-02-09 23:41:23 +01:00
Muriithi Frederick Muriuki 1f42d824c1
gnu: Add python-flake8-polyfill. 
* gnu/packages/python.scm (python-flake8-polyfill, python2-flake8-polyfill):
New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-02-09 22:54:58 +01:00
Muriithi Frederick Muriuki 1a917fc9de
gnu: Add python-rst2ansi. 
* gnu/packages/python.scm (python-rst2ansi): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-02-09 22:54:58 +01:00
ng0 6bd9ad6942
gnu: python-dateutil-2: Update to 2.5.3. 
* gnu/packages/python.scm (python-dateutil-2): Update to 2.5.3.
 2017-02-08 08:33:16 +01:00
Leo Famulari e8c83d04e1
Merge branch 'master' into core-updates 2017-02-02 10:52:24 -05:00
Tobias Geerinckx-Rice 0bb1c35ac1
gnu: python-stem: Update to 1.5.4. 
* gnu/packages/python.scm (python-stem): Update to 1.5.4.
 2017-02-01 15:53:31 +01:00
宋文武 736cfc10f0
gnu: python-xdo: Hardcode the path of 'libxdo.so'. 
* gnu/packages/python.scm (python-xdo)[arguments]: Add 'patch-libxdo-path'
phase.
 2017-01-28 12:30:41 +08:00
宋文武 0b5e08637e
gnu: python-xdo: Add 'python-six' to 'propagated-inputs'. 
* gnu/packages/python.scm (python-xdo)[propagated-inputs]: New field.
 2017-01-28 12:02:34 +08:00
Tobias Geerinckx-Rice 5bbb224916
gnu: python-pbr: Update to 1.10.0. 
* gnu/packages/python.scm (python-pbr): Update to 1.10.0.
 2017-01-26 21:05:06 +01:00
Tobias Geerinckx-Rice 0e6df70b6a
gnu: python-wheel: Update to 0.30.0a0. 
* gnu/packages/python.scm (python-wheel): Update to 0.30.0a0.
 2017-01-26 21:05:05 +01:00
Tobias Geerinckx-Rice 60a8be3a56
gnu: awscli: Update to 1.11.43. 
* gnu/packages/python.scm (awscli): Update to 1.11.43.
[home-page]: Use HTTPS.
 2017-01-26 21:05:05 +01:00
Tobias Geerinckx-Rice 28576403af
gnu: python-certifi: Update to 2017.1.23. 
* gnu/packages/python.scm (python-certifi): Update to 2017.1.23.
[arguments]: Remove: run tests if they're ever added.
[home-page]: Fix or update.
 2017-01-26 21:05:04 +01:00
Tobias Geerinckx-Rice eff8d773d6
gnu: python-mistune: Fix source URI. 
* gnu/packages/python.scm (python-mistune)[source]: Use pypi-uri.
 2017-01-26 08:15:09 +01:00
Tobias Geerinckx-Rice 911a8fafb2
gnu: python-redis: Update to 2.10.5. 
* gnu/packages/python.scm (python-redis): Update to 2.10.5.
[source]: Use pypi-uri.
 2017-01-26 08:07:03 +01:00
Leo Famulari d123f2f991
Merge branch 'master' into core-updates 2017-01-25 12:42:39 -05:00
Danny Milosavljevic a282d7ff17
gnu: python-2.7: Enable UCS-4 Unicode encoding. 
* gnu/packages/python.scm (python-2.7)[arguments]: Modify.
 2017-01-25 11:55:10 +01:00
Marius Bakke 5e217a8b4b
gnu: python-debian: Fix URL. 
* gnu/packages/python.scm (python-debian)[source]: Use 'pypi-uri'.
 2017-01-25 01:11:57 +01:00
Tobias Geerinckx-Rice e80aaeb4ad
gnu: python2-pysqlite: Update to 2.8.3. 
* gnu/packages/python.scm (python2-pysqlite): Update to 2.8.3.
 2017-01-24 23:27:07 +01:00
Tobias Geerinckx-Rice 49d5e338d6
gnu: python-cov-core: Fix & improve synopsis & description. 
* gnu/packages/python.scm (python-cov-core)[synopsis]: Capitalise and add
‘coverage’ key-word.
[description]: Use @code.
 2017-01-24 23:27:07 +01:00
Tobias Geerinckx-Rice b165c215e1
gnu: python-email-validator: Update to 1.0.2. 
* gnu/packages/python.scm (python-email-validator): Update to 1.0.2.
 2017-01-24 23:27:06 +01:00
Tobias Geerinckx-Rice 08b813366e
gnu: python-mistune: Update to 0.7.3. 
* gnu/packages/python.scm (python-mistune): Update to 0.7.3.
 2017-01-24 23:27:06 +01:00
Tobias Geerinckx-Rice e6ace98d10
gnu: python-tabulate: Update to 0.7.7. 
* gnu/packages/python.scm (python-tabulate): Update to 0.7.7
 2017-01-24 23:27:05 +01:00
Tobias Geerinckx-Rice ba1731dac5
gnu: python-paste: Update to 2.0.3. 
* gnu/packages/python.scm (python-paste): Update to 2.0.3.
[arguments]: Re-enable tests.  They now pass even on Python 3.
[properties]: Remove.
(python2-paste): Use package-with-python2 directly now.
 2017-01-24 23:27:05 +01:00
Tobias Geerinckx-Rice 46e110cca5
gnu: python-colorama: Fix typo in synopsis. 
* gnu/packages/python.scm (python-colorama)[synopsis]: Capitalise.
 2017-01-24 23:27:05 +01:00
Tobias Geerinckx-Rice f92576f963
gnu: python-colorama: Update to 0.3.7. 
* gnu/packages/python.scm (python-colorama): Update to 0.3.7.
 2017-01-24 23:27:04 +01:00
Tobias Geerinckx-Rice 02d7f33705
gnu: python-debian: Update to 0.1.28. 
* gnu/packages/python.scm (python-debian): Update to 0.1.28.
 2017-01-24 23:27:04 +01:00
Tobias Geerinckx-Rice ccc1876210
gnu: python-seaborn: Update to 0.7.1. 
* gnu/packages/python.scm (python-seaborn): Update to 0.7.1.
 2017-01-24 23:27:04 +01:00
Tobias Geerinckx-Rice 5754fe9570
gnu: python-unidecode: Update to 0.04.20. 
* gnu/packages/python.scm (python-unidecode): Update to 0.04.20.
 2017-01-24 23:27:03 +01:00
Tobias Geerinckx-Rice 4418990d77
gnu: python-alembic: Update to 0.8.10. 
* gnu/packages/python.scm (python-alembic): Update to 0.8.10.
 2017-01-24 23:27:03 +01:00
Tobias Geerinckx-Rice 9e2802cb8d
gnu: python-orderedmultidict: Update to 0.7.11. 
* gnu/packages/python.scm (python-orderedmultidict): Update to 0.7.11.
 2017-01-24 23:27:03 +01:00
Carlo Zancanaro af7caada40
gnu: Add python2-slowaes. 
* gnu/packages/python.scm (python2-slowaes): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-01-22 13:40:48 +08:00
Carlo Zancanaro cba84a3805
gnu: Add python-qrcode. 
* gnu/packages/python.scm (python-qrcode, python2-qrcode): New variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-01-22 13:39:57 +08:00
Carlo Zancanaro 916aafa401
gnu: Add python-pbkdf2. 
* gnu/packages/python.scm (python-pbkdf2, python2-pbkdf2): New variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-01-22 13:39:23 +08:00
Marius Bakke a50e030141
gnu: python-scipy, python-matplotlib: Fix build after Sphinx update. 
* gnu/packages/python.scm (python-sphinx-1.2.3, python2-sphinx-1.2.3): New
variables.
(python-matplotlib)[native-inputs]: Change 'python-sphinx' to 'python-sphinx-1.2.3'.
(python2-matplotlib)[native-inputs]: New field.
(python-scipy)[native-inputs]: Change 'python-sphinx' to 'python-sphinx-1.2.3'.
(python2-scipy)[native-inputs]: New field.
 2017-01-20 20:18:07 +01:00
Marius Bakke db967b6462
gnu: python-scipy: Fix expression after changing to 'modify-phases'. 
This is a followup to 16ca6aaac8.

* gnu/packages/python.scm (python-scipy)[arguments]: Fix parens.
 2017-01-19 18:48:37 +01:00
Marius Bakke 16ca6aaac8
gnu: python-scipy: Use 'modify-phases' syntax. 
* gnu/packages/python.scm (python-scipy)[arguments]: Use 'modify-phases'.
 2017-01-19 16:59:28 +01:00
Danny Milosavljevic 7adb90311f
gnu: python-testtools: Update to 1.4.0. 
* gnu/packages/python.scm (python-testtools): Update to 1.4.0.
  [source]: Use pypi-uri.
  [arguments]: New field.
 2017-01-19 16:29:56 +01:00
Danny Milosavljevic d83d872259
gnu: Add python-dulwich. 
* gnu/packages/python.scm (python-dulwich, python2-dulwich): New variables.
 2017-01-19 15:34:46 +01:00
Danny Milosavljevic b585e36184
gnu: Add python-fastimport. 
* gnu/packages/python.scm (python-fastimport, python2-fastimport):
  New variables.
 2017-01-19 00:39:49 +01:00
Danny Milosavljevic c227458ac8
gnu: python-sphinx: Update to 1.5.1 and enable tests. 
* gnu/packages/python.scm (python-sphinx): Update to 1.5.1.
  [arguments]: New field.
  [native-inputs]: Add graphviz, python-html5lib, python-mock, python-nose,
  python-requests.
  (python2-sphinx)[native-inputs]: Add python2-enum34.
 2017-01-19 00:32:35 +01:00
Marius Bakke df893a3855
gnu: Add python-cram. 
* gnu/packages/python.scm (python-cram, python2-cram): New variables.
 2017-01-18 21:28:59 +01:00
Marius Bakke c9a1812527
gnu: Add python-geventhttpclient. 
* gnu/packages/python.scm (python-geventhttpclient, python2-geventhttpclient):
New variables.
 2017-01-18 00:20:39 +01:00
Marius Bakke d1ba1d6bfd
gnu: python-requests: Update to 2.12.4. 
* gnu/packages/python.scm (python-requests, python2-requests): Update to 2.12.4.
 2017-01-18 00:19:04 +01:00
Thomas Danckaert 138adbbe05
gnu: Add python-autopep8. 
* gnu/packages/python.scm (python-autopep8, python2-autopep8): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-16 22:13:21 +01:00
Danny Milosavljevic fdcbf10b70
gnu: python-matplotlib: Make sure that phases end with #t. 
* gnu/packages/python.scm (python-matplotlib)[arguments]:
  Make sure that phases end with #t.
 2017-01-14 22:35:42 +01:00
Danny Milosavljevic 84e0f8c1ed
gnu: python-matplotlib: Fix reST markup error. 
* gnu/packages/python.scm (python-matplotlib)[arguments]:
  Fix reST markup error.
 2017-01-14 22:07:04 +01:00
Danny Milosavljevic 42b7009a00
gnu: python-matplotlib: Use 'modify-phases' syntax. 
* gnu/packages/python.scm (python-matplotlib)[arguments]: Use 'modify-phases'.
 2017-01-14 22:03:54 +01:00
Leo Famulari 268e8ad87f
gnu: python-icalendar: Update to 3.11.2. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.2.
 2017-01-14 14:18:30 -05:00
Leo Famulari 1003fbcfc6
gnu: python2-dogtail: Fix typo in synopsis. 
* gnu/packages/python.scm (python2-dogtail)[synopsis]: Remove 'ZERO
WIDTH SPACE' (U+200B) character.
 2017-01-13 17:12:43 -05:00
Danny Milosavljevic 9a8acd00da
gnu: python-sphinx: Update to 1.4.8. 
* gnu/packages/python.scm (python-sphinx)[version]: Update to 1.4.8.
  [source]: Use pypi-uri.
  [propagated-inputs]: Add python-imagesize, python-sphinx-alabaster-theme,
  python-babel, python-snowballstemmer, python-six.
  [properties]: Add python2-variant.
  (python2-sphinx)[native-inputs]: Add python2-mock.
  [propagated-inputs]: Add python2-pytz.
 2017-01-13 22:58:54 +01:00
Leo Famulari cc0725914e
Merge branch 'master' into python-tests 2017-01-13 10:21:17 -05:00
Danny Milosavljevic 8d67610bdc
gnu: Add python2-cheetah 
* gnu/packages/python.scm (python2-cheetah): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-11 13:09:21 -05:00
Tobias Geerinckx-Rice d4acb6db2f
gnu: python-click: Update to 6.7. 
* gnu/packages/python.scm (python-click): Update to 6.7.
 2017-01-10 17:36:57 +01:00
Ludovic Courtès 022c977258
gnu: libgit2, python-pygit2: Update to 0.25.1 [security fixes]. 
See <http://www.openwall.com/lists/oss-security/2017/01/10/5>.

* gnu/packages/version-control.scm (libgit2): Update to 0.25.1.
* gnu/packages/python.scm (python-pygit2): Update to 0.25.0.
 2017-01-10 15:49:49 +01:00
Maxim Cournoyer 392c26b0d1
gnu: python-pip: Update to 9.0.1 
* gnu/packages/python.scm (python-pip): Update to 9.0.1.
[native-inputs]: Remove.
[arguments]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-09 15:55:57 +01:00
Tobias Geerinckx-Rice 9657aeb187
gnu: python-tblib: Properly @end enumerate. 
* gnu/packages/python.scm (python-tblib)[description]: Don't use
‘@end itemize’ to end an ‘@enumerate’ block.
 2017-01-07 00:23:53 +01:00
Leo Famulari aa21c764d6
gnu: python-pycrypto: Fix CVE-2013-7459. 
* gnu/packages/patches/python-pycrypto-CVE-2013-7459.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto)[source]: Use the
patch. Use pypi-uri.
 2017-01-06 13:50:18 -05:00
Leo Famulari 491b78a8e8
gnu: python-icalendar: Update to 3.11.1. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.1.
 2017-01-06 03:19:36 -05:00
Marius Bakke 1bd858cc14
gnu: Fix indentation of some python packages. 
This is a followup to abe2ec73..807a5b32.

* gnu/packages/python.scm (python-snowballstemmer,
  python-sphinx-cloud-sptheme, python-sphinx-alabaster-theme): Fix indentation.
 2017-01-05 16:28:01 +01:00
Danny Milosavljevic 807a5b32bf
gnu: Add python-sphinx-alabaster-theme. 
* gnu/packages/python.scm (python-sphinx-alabaster-theme,
  python2-sphinx-alabaster-theme): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-05 16:17:27 +01:00
Danny Milosavljevic 754bfd7019
gnu: Add python-sphinx-cloud-sptheme. 
* gnu/packages/python.scm (python-sphinx-cloud-sptheme,
  python2-sphinx-cloud-sptheme): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-05 16:17:27 +01:00
Danny Milosavljevic 89cd988b6c
gnu: Add python-snowballstemmer. 
* gnu/packages/python.scm (python-snowballstemmer,
  python2-snowballstemmer): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-05 16:17:26 +01:00
Tobias Geerinckx-Rice 3b3b60d037
gnu: Use HTTPS for all sourceforge.net home pages. 
* gnu/packages/admin.scm (mingetty, clusterssh)[home-page]: Use HTTPS.
* gnu/packages/audio.scm (libbs2b, soxr)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (bless)[home-page]: Likewise.
* gnu/packages/display-managers.scm (slim)[home-page]: Likewise.
* gnu/packages/games.scm (extremetuxracer)[home-page]: Likewise.
* gnu/packages/ghostscript.scm (gs-fonts)[home-page]: Likewise.
* gnu/packages/haskell.scm (ghc-regex-base, ghc-regex-posix,
ghc-regex-compat)[home-page]: Likewise.
* gnu/packages/image.scm (imlib2)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (librevenge, libcmis, libodfgen, libmwaw)
[home-page]: Likewise.
* gnu/packages/linux.scm (hdparm, acpid, libavc1394, rng-tools)
[home-page]: Likewise.
* gnu/packages/mail.scm (esmtp)[home-page]: Likewise.
* gnu/packages/mp3.scm (ripperx)[home-page]: Likewise.
* gnu/packages/onc-rpc.scm (libtirpc)[home-page]: Likewise.
* gnu/packages/perl.scm (perl-czplib)[home-page]: Likewise.
* gnu/packages/python.scm (python-pyasn1-modules)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (xosd)[home-page]: Likewise.
 2017-01-04 05:14:22 +01:00
Leo Famulari 7637de2313
gnu: Add python-xdo. 
* gnu/packages/python.scm (python-xdo): New variable.
(python2-xdo): Use package-with-python2.
 2017-01-03 12:35:44 -05:00
Leo Famulari e871c332a0
gnu: python2-xdo: Update to 0.3. 
* gnu/packages/python.scm (python2-xdo): Update to 0.3.
 2017-01-03 12:35:44 -05:00
Tobias Geerinckx-Rice 1b5ea0922f
gnu: python-s3transfer: Update to 0.1.10. 
* gnu/packages/python.scm (python-s3transfer): Update to 0.1.10.
 2017-01-02 08:37:26 +01:00
Tobias Geerinckx-Rice 1f89fb1691
gnu: python-greenlet: Update to 0.4.11. 
* gnu/packages/python.scm (python-greenlet): Update to 0.4.11.
 2017-01-02 08:37:25 +01:00
Tobias Geerinckx-Rice 3753f2e6e9
gnu: python-mako: Update to 1.0.6. 
* gnu/packages/python.scm (python-mako): Update to 1.0.6.
 2017-01-02 08:37:25 +01:00
Tobias Geerinckx-Rice af27e845e1
gnu: awscli: Update to 1.11.35. 
* gnu/packages/python.scm (awscli): Update to 1.11.35.
 2017-01-02 08:37:24 +01:00
Tobias Geerinckx-Rice bbb99d6b37
gnu: python-werkzeug: Update to 0.11.15. 
* gnu/packages/python.scm (python-werkzeug): Update to 0.11.15.
 2017-01-02 08:37:23 +01:00
Tobias Geerinckx-Rice 27f9148e1d
gnu: python-backports-abc: Update to 0.5. 
* gnu/packages/python.scm (python-backports-abc): Update to 0.5.
 2017-01-02 08:37:23 +01:00
Tobias Geerinckx-Rice d79fa7da1b
gnu: python-decorator: Update to 4.0.10. 
* gnu/packages/python.scm (python-decorator): Update to 4.0.10.
 2017-01-02 08:37:22 +01:00
Tobias Geerinckx-Rice 819939cb94
gnu: python-pycparser: Use ‘modify-phases’ syntax. 
* gnu/packages/python.scm (python-pycparser)[arguments]: Use
‘modify-phases’.
 2017-01-02 08:37:21 +01:00
Tobias Geerinckx-Rice 5043b20dcd
gnu: python-pycparser: Update to 2.17. 
* gnu/packages/python.scm (python-pycparser): Update to 2.17.
 2017-01-02 08:28:28 +01:00
Leo Famulari 2e161eafd8
gnu: python-pyicu: Update to 1.9.5. 
* gnu/packages/python.scm (python-pyicu, python2-pyicu): Update to 1.9.5.
[source]: Use pypi-uri.
 2017-01-01 20:15:06 -05:00
Leo Famulari 7be13d0006
gnu: python-ndg-httpsclient: Use pypi-uri. 
* gnu/packages/python.scm (python-ndg-httpsclient, python2-ndg-httpsclient)
[source]: Use pypi-uri.
 2017-01-01 17:01:32 -05:00
Tobias Geerinckx-Rice b13a5b4d16
gnu: python-graphql-relay: Update to 0.4.5. 
* gnu/packages/python.scm (python-graphql-relay): Update to 0.4.5.
 2016-12-31 16:51:56 +01:00
Tobias Geerinckx-Rice 0c315fb394
gnu: python-freezegun: Update to 0.3.8. 
* gnu/packages/python.scm (python-freezegun): Update to 0.3.8.
 2016-12-31 16:51:56 +01:00
Tobias Geerinckx-Rice 234ade2d7b
gnu: python-ply: Update to 3.9. 
* gnu/packages/python.scm (python-ply): Update to 3.9.
[source]: Use pypi-uri.
 2016-12-31 16:51:55 +01:00
Tobias Geerinckx-Rice ab0c342924
gnu: python-pyquery: Update to 1.2.17. 
* gnu/packages/python.scm (python-pyquery): Update to 1.2.17.
 2016-12-31 16:51:55 +01:00
Tobias Geerinckx-Rice 42734b9a88
gnu: python-click-log: Update to 0.1.8. 
* gnu/packages/python.scm (python-click-log): Update to 0.1.8.
 2016-12-31 16:51:54 +01:00
Tobias Geerinckx-Rice ae476d01da
gnu: python-ndg-httpsclient: Update to 0.4.2. 
* gnu/packages/python.scm (python-ndg-httpsclient): Update to 0.4.2.
 2016-12-31 16:51:54 +01:00
Tobias Geerinckx-Rice f165648e1b
gnu: python-ipykernel: Update to 4.5.2. 
* gnu/packages/python.scm (python-ipykernel): Update to 4.5.2.
 2016-12-31 16:51:53 +01:00
Tobias Geerinckx-Rice 45cc957c72
gnu: python-jupyter-core: Update to 4.2.1. 
* gnu/packages/python.scm (python-jupyter-core): Update to 4.2.1.
 2016-12-31 16:51:53 +01:00
Tobias Geerinckx-Rice 594358f5b6
gnu: python2-fastlmm: Update to 0.2.26. 
* gnu/packages/python.scm (python2-fastlmm): Update to 0.2.26.
 2016-12-31 16:51:40 +01:00
Tobias Geerinckx-Rice a5f92ca04f
gnu: python-pytz: Update to 2016.10. 
* gnu/packages/python.scm (python-pytz): Update to 2016.10.
 2016-12-31 16:36:20 +01:00
Tobias Geerinckx-Rice bf5e4bc42a
gnu: python-pyyaml: Update to 3.12. 
* gnu/packages/python.scm (python-pyyaml): Update to 3.12.
[source]: Use pypi-uri.
 2016-12-31 15:27:24 +01:00
Tobias Geerinckx-Rice 7d2e758df5
gnu: python-pygments: Update to 2.1.3. 
* gnu/packages/python.scm (python-pygments): Update to 2.1.3.
 2016-12-31 15:27:23 +01:00
ng0 d5bbf806f3
gnu: Add python-trollius-redis. 
* gnu/packages/python.scm (python-trollius-redis, python2-trollius-redis): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0 789de5e279
gnu: Add python-straight-plugin. 
* gnu/packages/python.scm (python-straight-plugin, python2-straight-plugins):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0 a0e41de4ab
gnu: Add python-openid-teams. 
* gnu/packages/python.scm (python-openid-teams, python2-openid-teams): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0 03702173f1
gnu: Add python-openid-cla. 
* gnu/packages/python.scm (python-openid-cla, python2-openid-cla): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0 3ef00f5609
gnu: Add python2-openid. 
* gnu/packages/python.scm (python2-openid): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0 0151a8df22
gnu: Add python-pygit2. 
* gnu/packages/python.scm (python-pygit2, python2-pygit2): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0 460fccd4b3
gnu: Add python-munch. 
* gnu/packages/python.scm (python-munch, python2-munch): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0 9f21414de4
gnu: Add python-kitchen. 
* gnu/packages/python.scm (python-kitchen, python2-kitchen): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0 a2c7d88e74
gnu: Add python-flask-multistatic. 
* gnu/packages/python.scm (python-flask-multistatic, python2-flask-multistatic):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0 a7ad802be5
gnu: Add python-flask-wtf. 
* gnu/packages/python.scm (python-flask-wtf, python2-flask-wtf): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:45 -05:00
Tobias Geerinckx-Rice 6a34f4ccc8
gnu: python-prompt-toolkit: Update to 1.0.9. 
* gnu/packages/python.scm (python-prompt-toolkit): Update to 1.0.9.
 2016-12-29 02:38:21 +01:00
Tobias Geerinckx-Rice 791ac6a68d
gnu: python-markdown: Update to 2.6.7. 
* gnu/packages/python.scm (python-markdown): Update to 2.6.7.
 2016-12-29 02:38:20 +01:00
Tobias Geerinckx-Rice 2ee57340f4
gnu: python-numexpr: Update to 2.6.1. 
* gnu/packages/python.scm (python-numexpr): Update to 2.6.1.
 2016-12-29 02:38:20 +01:00
Tobias Geerinckx-Rice ffb1e98d74
gnu: python-babel: Update to 2.3.4. 
* gnu/packages/python.scm (python-babel): Update to 2.3.4.
 2016-12-29 02:38:20 +01:00
Thomas Danckaert ea8450c82a
gnu: Add python-netcdf4. 
* gnu/packages/python.scm (python-netcdf4, python2-netcdf4): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 16:30:59 +01:00
Leo Famulari 1194575b3c
gnu: python-pycrypto: Add TODO "removal" comment. 
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto): Add
comment.
 2016-12-26 19:51:54 -05:00
Leo Famulari 4de2a710a6
gnu: python-stem: Don't use python-pycrypto. 
Python-pycrypto is an optional dependency of python-stem. Python-pycrypto is
unmaintained [0] and contains an exploitable buffer overflow bug [1].

[0] https://github.com/dlitz/pycrypto/issues/173
[1] https://github.com/dlitz/pycrypto/issues/176

* gnu/packages/python.scm (python-stem, python2-stem)[propagated-inputs]: Remove
python-pycrypto.
 2016-12-26 19:51:49 -05:00
Leo Famulari c976b319fe
gnu: python-stem: Update to 1.5.3. 
* gnu/packages/python.scm (python-stem, python2-stem): Update to 1.5.3.
[source]: Update URL.
 2016-12-26 13:20:52 -05:00
Thomas Danckaert d205f895ca
gnu: Add python-hdf4. 
* gnu/packages/python.scm (python-hdf4, python2-hdf4): New variables.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-23 14:51:56 +01:00
Ricardo Wurmus 8e401ab6db
gnu: python-scikit-learn: Update to 0.18.1. 
* gnu/packages/python.scm (python-scikit-learn): Update to 0.18.1.
[arguments]: Remove special "check" phase.
[native-inputs]: Add python-cython.
 2016-12-22 13:19:20 +01:00
Tobias Geerinckx-Rice 361a2fcf8d
gnu: Add python-xopen. 
* gnu/packages/python.scm (python-xopen, python2-xopen): New variables.
 2016-12-19 20:33:31 +01:00
Hartmut Goebel 00e0ca7ccb
gnu: python-docutils: Update to 0.13.1 
* gnu/packages/python.scm(python-docutils): Update to 0.13.1.
[source]: Use pypi-uri.
 2016-12-18 16:31:35 +01:00
Marius Bakke ee94ca11a1
gnu: python-beautifulsoup4: Fix python2 variant. 
This is a followup to 5f37f0b66e.

* gnu/packages/python.scm (python-beautifulsoup4)[properties]: New
  field. Delay python2 variant.
 2016-12-16 16:15:41 +01:00
Marius Bakke 752eb9e0d8
gnu: python2-kombu: Disable tests. 
* gnu/packages/python.scm (python2-kombu)[arguments]: Set #:tests? #f.
 2016-12-16 15:33:13 +01:00
Marius Bakke 7c6bf660d8
gnu: python-pyopenssl: Enable tests. 
* gnu/packages/patches/python-pyopenssl-skip-network-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl)[source]: Use it.
[arguments]: Replace 'check' with custom phase.
 2016-12-16 14:36:15 +01:00
Marius Bakke 329553482d
gnu: ptpython: Disable tests. 
* gnu/packages/python.scm (ptpython, ptpython2)[arguments]: Set #:tests? #f.
 2016-12-16 13:39:07 +01:00
Marius Bakke 52f622ef9f
gnu: python-sympy: Update to 1.0. 
* gnu/packages/python.scm (python-sympy, python2-sympy): Update to 1.0.
[propagated-inputs]: Add python-mpmath.
 2016-12-16 13:22:12 +01:00
Marius Bakke 58a35665d9
gnu: Add python-mpmath. 
* gnu/packages/python.scm (python-mpmath, python2-mpmath): New variables.
 2016-12-16 13:22:10 +01:00
Marius Bakke 154d207c43
gnu: python-apsw: Fix tests. 
* gnu/packages/python.scm (python-apsw, python2-apsw)[arguments]: Use
  'modify-phases'. Add installed PYTHONPATH before running tests.
 2016-12-16 02:45:49 +01:00
Marius Bakke 80ce42bdbf
gnu: python-argcomplete: Fix tests. 
* gnu/packages/python.scm (python-argcomplete,
  python2-argcomplete)[native-inputs]: Add python-pexpect and tcsh.
 2016-12-16 02:16:23 +01:00
Marius Bakke 58f5fae7c4
gnu: python-widgetsnbextension: Fix tests. 
* gnu/packages/python.scm (python-widgetsnbextension,
  python2-widgetsnbextension)[native-inputs]: Add python-certifi.
 2016-12-16 02:14:54 +01:00
Marius Bakke ed11804309
gnu: python-pexpect: Update to 4.2.1. 
* gnu/packages/python.scm (python-pexpect, python2-pexpect): Update to 4.2.1.
[source]: Use 'pypi-uri'.
[arguments]: Add 'prepare-tests' phase to patch paths and delete network test.
[native-inputs]: Add python-pytest, man-db and which.
[propagated-inputs]: Add python-ptyprocess.
 2016-12-16 02:10:58 +01:00
Marius Bakke 01fb9f6638
gnu: python-axolotl: Remove workaround for bug #20765. 
* gnu/packages/python.scm (python-axolotl, python2-axolotl)[arguments]:
Remove #:configure-flags.
 2016-12-16 01:07:41 +01:00
Marius Bakke 22d7360b16
gnu: Remove python-dateutil@1.5. 
* gnu/packages/python.scm (python-dateutil-2, python2-dateutil-2): Rename to ...
(python-dateutil, python2-dateutil): ... this. Remove 1.5 version.
(python-tzlocal, python2-tzlocal): Adjust variable name.
(python-rst.linker, python2-rst.linker): Likewise.
(pelican): Likewise.
(python-matplotlib, python2-matplotlib): Likewise.
(python-sqlalchemy-utils, python2-sqlalchemy-utils): Likewise.
(python-icalendar, python2-icalendar): Likewise.
(python-botocore, python2-botocore): Likewise.
(python-vobject, python2-vobject): Likewise.
(python-arrow, python2-arrow): Likewise.
(python-fake-factory, python2-fake-factory): Likewise.
(python-freezegun, python2-freezegun): Likewise.
(python-aniso8601, python2-aniso8601): Likewise.
* gnu/packages/jrnl.scm (jrnl): Likewise.
* gnu/packages/calendar.scm (limnoria): Likewise.
 2016-12-16 00:54:48 +01:00
Marius Bakke 59f74825d6
gnu: python-flask-restplus: Disable tests. 
* gnu/packages/python.scm (python-flask-restplus)[arguments]: Set #:tests? #f.
 2016-12-15 19:56:44 +01:00
Marius Bakke ad348f9f39
gnu: python-gridmap: Disable tests. 
* gnu/packages/python.scm (python-gridmap, python2-gridmap)[arguments]:
Set #:tests? #f.
 2016-12-15 19:50:12 +01:00
Marius Bakke 15c37077bc
gnu: python-hy: Fix test suite. 
* gnu/packages/python.scm (python-hy, python2-hy)[arguments]: Replace 'check'
phase with custom command.
[native-inputs]: Add python-coverage and python-nose.
 2016-12-15 19:49:06 +01:00
Marius Bakke 8653c1d557
gnu: python-py3status: Disable tests. 
* gnu/packages/python.scm (python-py3status)[arguments]: Set #:tests? #f.
 2016-12-15 19:09:18 +01:00
Marius Bakke 0a70200951
gnu: python-pyserial: Disable tests. 
* gnu/packages/python.scm (python-pyserial, python2-pyserial)[arguments]:
Set #:tests? #f.
 2016-12-15 18:42:22 +01:00
Marius Bakke 8bd5164b4a
gnu: python-pystache: Disable tests for python3 variant. 
* gnu/packages/python.scm (python-pystache)[arguments]: Disable tests.
[properties]: New field. Delay python2 variant.
(python2-pystache)[arguments]: Replace 'check' phase with custom command.
 2016-12-15 18:35:21 +01:00
Marius Bakke 4eb385fb33
gnu: python-pytest-xdist: Disable tests. 
* gnu/packages/python.scm (python-pytest-xdist,
  python2-pytest-xdist)[arguments]: Set #:tests? #f.
 2016-12-15 18:11:43 +01:00
Marius Bakke 444464ec28
gnu: python-rpy2: Fix tests. 
* gnu/packages/python.scm (python-rpy2, python2-rpy2)[arguments]: Replace
  check phase with custom post-install command.
 2016-12-15 17:55:36 +01:00
Marius Bakke 6f976df677
gnu: python-seaborn: Disable tests. 
* gnu/packages/python.scm (python-seaborn, python2-seaborn)[arguments]:
  Disable tests.
 2016-12-15 17:31:29 +01:00
Marius Bakke 35d56b7b60
gnu: python-sqlalchemy-utils: Disable tests. 
* gnu/packages/python.scm (python-sqlalchemy-utils,
  python2-sqlalchemy-utils)[arguments]: Set #:tests? #f.
  [native-inputs]: Add python-dateutil-2, python-flexmock, python-pcycopg2 and
  python-pytz.
 2016-12-15 17:26:42 +01:00
Marius Bakke c616b5d3b5
gnu: python-oauthlib: Fix tests. 
* gnu/packages/python.scm (python-oauthlib)[native-inputs]:
  Add python-mock.
(python2-oauthlib)[native-inputs]: Inherit python-mock.
 2016-12-15 16:50:15 +01:00
Marius Bakke 49910e6a7c
gnu: python-paramiko: Disable tests. 
* gnu/packages/python.scm (python-paramiko, python2-paramiko)[arguments]:
Set #:tests? #f.
 2016-12-15 14:01:27 +01:00
Marius Bakke 7917a13554
gnu: python-termstyle: Fix tests. 
* gnu/packages/python.scm (python-termstyle)[arguments]: Replace 'check' phase
with custom command.
 2016-12-15 13:17:29 +01:00
Marius Bakke a960e73fad
gnu: python-twisted: Disable tests. 
* gnu/packages/python.scm (python-twisted, python2-twisted)[arguments]:
Set #:tests? #f.
 2016-12-15 13:13:23 +01:00
Marius Bakke a74f9b12ae
gnu: python-zope-security: Disable tests. 
* gnu/packages/python.scm (python-zope-security,
  python2-zope-security)[arguments]: Set #:tests? #f.
  [native-inputs]: Add python-six.
 2016-12-15 12:45:26 +01:00
Marius Bakke 40bb8e07ae
gnu: python-zope-location: Disable tests. 
* gnu/packages/python.scm (python-zope-location,
  python2-zope-location)[arguments]: Set #:tests? #f.
 2016-12-15 12:42:39 +01:00
Marius Bakke 66b3aadb73
gnu: python-zope-proxy: Disable tests. 
* gnu/packages/python.scm (python-zope-proxy, python2-zope-proxy)[arguments]:
  Set #:tests? #f.
 2016-12-15 12:40:10 +01:00
Marius Bakke 7e8b1bfa4b
gnu: python-zope-configuration: Disable tests. 
* gnu/packages/python.scm (python-zope-configuration,
  python2-zope-configuration)[arguments]: Set #:tests? #f.
 2016-12-15 12:38:04 +01:00
Marius Bakke 22dba2eff9
gnu: python-zope-interface: Disable tests. 
* gnu/packages/python.scm (python-zope-schema,
  python2-zope-schema)[arguments]: Set #:tests? #f.
 2016-12-15 12:35:26 +01:00
Marius Bakke 385871e5f7
gnu: python-zope-testrunner: Disable tests. 
* gnu/packages/python.scm (python-zope-testrunner,
  python2-zope-testrunner)[arguments]: Set #:tests? #f.
 2016-12-15 12:12:13 +01:00
Marius Bakke 7b93d86670
gnu: snakemake: Update to 3.9.0. 
* gnu/packages/python.scm (snakemake): Update to 3.9.0.
[source]: Use 'pypi-uri'.
[arguments]: Disable tests.
[home-page]: Update.
 2016-12-15 10:12:38 +01:00
Marius Bakke 972cf9be52
gnu: python-ly: Disable tests. 
* gnu/packages/python.scm (python-ly): Set #:tests? #f.
 2016-12-15 10:02:41 +01:00