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29321 Commits

Author SHA1 Message Date
Marius Bakke ac033c7ba1
gnu: evolution-data-server: Update to 3.26.6. 
* gnu/packages/gnome.scm (evolution-data-server): Update to 3.26.6.
[arguments]: Set RUNPATH in #:configure-flags to match new libdir structure.
Add phase 'dont-override-rpath' to make the build system respect it.
 2018-03-07 15:06:22 +01:00
Mark Meyer 30e43e816b
gnu: python2-gobject@2: Update to 2.28.7 
* gnu/packages/glib.scm (python2-gobject-2): Update to 2.28.7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-07 14:57:10 +01:00
Mark Meyer eaa8292e41
gnu: Add python-pycurl. 
* gnu/packages/python-web.scm (python-pycurl, python2-pycurl): New
variables.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-07 14:57:10 +01:00
Marius Bakke 9dda6dadf1
gnu: xdriinfo: Update to 1.0.6. 
* gnu/packages/xorg.scm (xdriinfo): Update to 1.0.6.
 2018-03-07 14:53:25 +01:00
Marius Bakke b5ebc1bf8c
gnu: twm: Update to 1.0.10. 
* gnu/packages/xorg.scm (twm): Update to 1.0.10.
[source]: Use bzip-compressed tarball.
 2018-03-07 14:53:25 +01:00
Marius Bakke 5668a365d6
gnu: mkfontscale: Update to 1.1.3. 
* gnu/packages/xorg.scm (mkfontscale): Update to 1.1.3.
 2018-03-07 14:53:24 +01:00
Marius Bakke 0cf985d615
gnu: imagemagick: Update to 6.9.9-37. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-37.
 2018-03-07 14:53:24 +01:00
Marius Bakke e07a44891c
gnu: Add gtksourceviewmm. 
* gnu/packages/gtk.scm (gtksourceviewmm): New public variable.
 2018-03-07 14:53:24 +01:00
Marius Bakke 8e933cb36a
gnu: Use HTTPS on gtkmm.org home pages. 
* gnu/packages/gtk.scm (atkmm, gtkmm)[home-page]: Use HTTPS.
* gnu/packages/gnome.scm (libgnomecanvasmm)[home-page]: Likewise.
* gnu/packages/glib.scm (glibmm)[home-page]: Likewise.
 2018-03-07 14:53:24 +01:00
Marius Bakke 6a49ae7864
gnu: gtkmm: Use the for-test xorg variant for tests. 
* gnu/packages/gtk.scm (gtkmm)[native-inputs]: Replace XORG-SERVER with
XORG-SERVER-1.19.3.
[arguments]: Add #:disallowed-references.
 2018-03-07 14:53:24 +01:00
Marius Bakke 29c7b4d638
gnu: gtkmm: Update to 3.22.2. 
* gnu/packages/gtk.scm (gtkmm): Update to 3.22.2.
[arguments]: Set #:configure-flags.
 2018-03-07 14:53:24 +01:00
Marius Bakke 7700c6ca20
gnu: glibmm: Update to 2.54.1. 
* gnu/packages/glib.scm (glibmm): Update to 2.54.1.
[arguments]: Add #:configure-flags.
 2018-03-07 14:53:23 +01:00
Oleg Pykhalov 06c15ee585
gnu: Add r-colorout. 
* gnu/packages/statistics.scm (r-colorout): New public variable.
 2018-03-07 16:38:26 +03:00
Alex Vong 63d9900296
gnu: youtube-viewer: Add '$out/lib/perl5/site_perl/' to search path. 
Fixes <https://bugs.gnu.org/30671>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

* gnu/packages/video.scm (youtube-viewer)[arguments]: In 'wrap-program'
phase, add '$out/lib/perl5/site_perl/' to search path.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-07 11:22:42 +01:00
Charlie Ritter 270750d440
gnu: Add IBM Plex font. 
* gnu/packages/fonts.scm (font-ibm-plex): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-07 11:22:42 +01:00
Ludovic Courtès abfbdafd0e
linux-initrd: Add a hint for the missing module error. 
* gnu/system/linux-initrd.scm (check-device-initrd-modules): Add a
'&fix-hint'.
 2018-03-07 11:22:42 +01:00
Ludovic Courtès 16de45557f
ui: 'display-hint' preserves Texinfo formatting. 
The previous method would mess up with @example formatting, for
instance.

* guix/ui.scm (display-hint): Parameterize '%text-width' instead of
using 'fill-paragraph'.
 2018-03-07 11:22:42 +01:00
Ludovic Courtès e1ba6d49ea
ui: Display fix hints in the case where we have location info. 
* guix/ui.scm (call-with-error-handling): Display fix-hints in the
error + message case.
 2018-03-07 11:22:42 +01:00
Ludovic Courtès ca23693d28
linux-initrd: Factorize 'check-device-initrd-modules'. 
* gnu/system/mapped-devices.scm (check-device-initrd-modules): Move to...
* gnu/system/linux-initrd.scm (check-device-initrd-modules): ... here.
New procedure.
* po/guix/POTFILES.in: Add it.
* guix/scripts/system.scm (check-initrd-modules)[check-device]: Remove.
Use 'check-device-initrd-modules' instead.
 2018-03-07 11:22:42 +01:00
Ludovic Courtès 6c4458172d
services: file-systems: Include 'user-file-systems' service. 
Previously the KNOWN-FS value used in 'essential-services' would be
incomplete: it would lack all the file systems provided by services that
extend 'file-system-service-type' (/sys/fs/cgroup,
/proc/sys/fs/binfmt_misc, etc.)  Consequently, upon shutdown,
'user-processes' would unmount these file systems before their
corresponding service had been stopped; when their corresponding (e.g.,
'file-system-/proc/sys/fs/binfmt_misc') was stopped, its 'umount' call
would fail.

This was harmless in practice, but this patch makes sure things work as
intended and file systems are unmounted in the right order.

* gnu/services/base.scm (file-system-shepherd-services): Instantiate
'user-file-systems' Shepherd service from here.
(user-unmount-service-type, user-unmount-service): Remove.
* gnu/system.scm (essential-services): Remove call to 'user-unmount-service'.
* gnu/system/install.scm (cow-store-service-type): Adjust comment.
 2018-03-07 11:22:42 +01:00
Ludovic Courtès 366ddc1ac5
services: dicod: Depend on 'user-processes'. 
* gnu/services/dict.scm (dicod-shepherd-service): Add 'requirement'.
 2018-03-07 11:22:41 +01:00
Eric Bavier 2468ca0488
gnu: thefuck: Update to 3.25. 
* gnu/packages/admin.scm (thefuck): Update to 3.25
[inputs]: Add python-pyte.
[native-inputs]: Remove python-setuptools.
* gnu/packages/patches/thefuck-test-environ.patch: Adjust to latest source.
 2018-03-06 23:33:57 -06:00
Julien Lepiller f70666c9ce
gnu: Add maven-resolver-connector-basic. 
* gnu/packages/maven.scm (maven-resolver-connector-basic): New variable.
 2018-03-06 23:06:19 +01:00
Julien Lepiller bca6cf54f4
gnu: Add maven-resolver-util. 
gnu/packages/maven.scm (maven-resolver-util): New variable.
 2018-03-06 23:06:15 +01:00
Julien Lepiller 360537838e
gnu: Add maven-resolver-test-util. 
* gnu/packages/maven.scm (maven-resolver-test-util): New variable.
 2018-03-06 23:06:12 +01:00
Julien Lepiller d85cb53924
gnu: Add maven-resolver-spi. 
* gnu/packages/maven.scm (maven-resolver-spi): New variable.
 2018-03-06 23:05:51 +01:00
Julien Lepiller 41125eaff8
gnu: Add maven-resolver-api. 
* gnu/packages/maven.scm: New file.
(maven-resolver-api): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-03-06 23:05:34 +01:00
Leo Famulari 613ef763a5
Merge branch 'master' into staging 2018-03-06 13:39:12 -05:00
Leo Famulari 8a325748fb
gnu: isc-dhcp: Update to 4.3.6-P1 [fixes CVE-2018-{5732,5733}]. 
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.6-P1.
 2018-03-06 13:34:20 -05:00
Leo Famulari 3b5262865c
gnu: syncthing: Update to 0.14.45. 
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.45.
[inputs]: Remove go-github-com-xtaci-kcp-go,
go-github-com-ccding-go-stun, and go-github-com-xtaci-smux. Add
go-github-com-pkg-errors.
 2018-03-06 13:24:20 -05:00
Leo Famulari 01794ffce0
gnu: Remove go-github-com-templexxx-xor. 
* gnu/packages/syncthing.scm (go-github-com-templexxx-xor): Remove variable.
 2018-03-06 13:24:20 -05:00
Leo Famulari 6482d30472
gnu: Remove go-github-com-templexxx-cpufeat. 
* gnu/packages/syncthing.scm (go-github-com-templexxx-cpufeat): Remove
variable.
 2018-03-06 13:24:20 -05:00
Leo Famulari 7d02ae4b85
gnu: Remove go-github-com-tjfoc-gmsm-sm4. 
* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): Remove variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari 7915ef0bff
gnu: Remove go-github-com-klauspost-reedsolomon. 
* gnu/packages/syncthing.scm (go-github-com-klauspost-reedsolomon): Remove
variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari abb8973544
gnu: Remove go-github-com-klauspost-cpuid. 
* gnu/packages/syncthing.scm (go-github-com-klauspost-cpuid): Remove variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari eaca421063
gnu: Remove go-github-com-ccding-go-stun. 
* gnu/packages/syncthing.scm (go-github-com-ccding-go-stun): Remove variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari bb0a84f89d
gnu: Remove go-github-com-xtaci-kcp-go. 
* gnu/packages/syncthing.scm (go-github-com-xtaci-kcp-go): Remove variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari 78f19a4754
gnu: Remove go-github-com-xtaci-smux. 
* gnu/packages/syncthing.scm (go-github-com-xtaci-smux): Remove variable.
 2018-03-06 13:24:15 -05:00
Marius Bakke 77412c45b1
gnu: re2: Update to 2018-03-01. 
* gnu/packages/regex.scm (re2): Update to 2018-03-01.
 2018-03-06 18:23:42 +01:00
Marius Bakke 37204750b1
gnu: feh: Update to 2.25. 
* gnu/packages/image-viewers.scm (feh): Update to 2.25.
 2018-03-06 18:22:26 +01:00
Marius Bakke 6836c228ae
gnu: iceauth: Update to 1.0.8. 
* gnu/packages/xorg.scm (iceauth): Update to 1.0.8.
 2018-03-06 18:16:51 +01:00
Marius Bakke 6f1f8d1312
gnu: python-django: Update to 1.11.11 [fixes CVE-2018-7536 and CVE-2018-7537]. 
See <https://www.djangoproject.com/weblog/2018/mar/06/security-releases/> for
more information about the vulnerabilities.

* gnu/packages/django.scm (python-django): Update to 1.11.11.
 2018-03-06 17:38:12 +01:00
Ricardo Wurmus c072cf57b9
gnu: samtools: Update to 1.7. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
 2018-03-06 16:03:04 +01:00
Ricardo Wurmus 727d847980
gnu: htslib: Update to 1.7. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.7.
[arguments]: Remove field.
 2018-03-06 16:03:04 +01:00
Ricardo Wurmus e325c89076
gnu: r-rhdf5: Make build reproducible. 
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and
host system information from settings file.
 2018-03-06 16:03:04 +01:00
Ricardo Wurmus fe58ab013b
gnu: r-lambda-r: Run unit tests. 
* gnu/packages/statistics.scm (r-lambda-r)[native-inputs]: Add r-runit.
[arguments]: Add build phase to delete test logs.
 2018-03-06 16:03:04 +01:00
Ricardo Wurmus 08ddb98aef
gnu: r-gtools: Make output deterministic. 
* gnu/packages/statistics.scm (r-gtools)[arguments]: Add build phase to avoid
running tempdir at build time.
 2018-03-06 16:03:04 +01:00
Ludovic Courtès 7949c140b1
ui: 'load*' no longer fails on Guile 2.2.3 upon EACCES or similar. 
Previously, if ~/.cache was not write-accessible, 'guix' would exit with
code 1 without printing any message.  That was because the 'make-stack'
call would fail since the exception (a 'system-error) came from
'compile-file', which was called at a point where TAG wasn't installed
yet.  Secondly, to mimick auto-compilation behavior, we just swallow
'system-error raised by 'compile-file'.

Reported by Clément Lassieur.

* guix/ui.scm (load*): Move 'compile-file' call in the dynamic extent of
TAG.  Catch 'system-error around it and ignore it.
 2018-03-06 10:50:39 +01:00
Oleg Pykhalov 5ad13e6cdf
gnu: emacs-transmission: Update to 0.12.1. 
* gnu/packages/emacs.scm (emacs-transmission): Update to 0.12.1.
 2018-03-06 12:09:02 +03:00
Oleg Pykhalov 69611d3eac
gnu: haskell-mode: Fix find emacs-stream elisp directory. 
* gnu/packages/emacs.scm (haskell-mode)[arguments]: Find only directories with
"\\.el$" in ‘el-dir’.
 2018-03-06 10:34:59 +03:00