54d9b568fc
gnu: r-iranges: Update to 2.8.1.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.1.
2016-12-29 22:24:11 +01:00
86fc9c4a2c
gnu: r-s4vectors: Update to 0.12.1.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.1.
2016-12-29 22:24:11 +01:00
c8ad8b6976
gnu: r-biocstyle: Update to 2.2.1.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.2.1.
2016-12-29 22:24:10 +01:00
007ee80277
gnu: r-deseq2: Update to 1.14.1.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.1.
2016-12-29 22:24:10 +01:00
d0f0579e6f
gnu: r-annotate: Update to 1.52.1.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.1.
[propagated-inputs]: Add r-rcurl.
2016-12-29 22:24:10 +01:00
a57495e27a
gnu: khard: Update to 0.11.3.
...
* gnu/packages/mail.scm (khard): Update to 0.11.3.
[arguments]: Build with python instead of python-2. Remove
'disable-egg-compression' phase.
[propagated-inputs]: Don't use python-2 variants of propagated-inputs.
2016-12-29 16:12:13 -05:00
35bb2ff88a
gnu: r-rsqlite: Update to 1.1-1.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1.
[propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp.
2016-12-29 21:49:13 +01:00
28c041afe8
gnu: Add r-plogr.
...
* gnu/packages/statistics.scm (r-plogr): New variable.
2016-12-29 21:49:13 +01:00
ab607061cd
gnu: r-hmisc: Update to 4.0-1.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1.
[propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart; add r-base64.
2016-12-29 21:49:12 +01:00
0811f0f9d2
gnu: Add r-base64.
...
* gnu/packages/statistics.scm (r-base64): New variable.
2016-12-29 21:49:12 +01:00
ca380feb37
gnu: r-rmarkdown: Update to 1.3.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3.
[propagated-inputs]: Remove r-tibble; add r-rprojroot.
2016-12-29 21:49:12 +01:00
046e27e3f5
gnu: Add r-rprojroot.
...
* gnu/packages/statistics.scm (r-rprojroot): New variable.
2016-12-29 21:49:12 +01:00
a8e45b3240
gnu: r-rcpparmadillo: Update to 0.7.600.1.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
2016-12-29 21:49:12 +01:00
b1c1f4d012
gnu: armadillo: Update to 7.600.2.
...
* gnu/packages/maths.scm (armadillo): Update to 7.600.2.
2016-12-29 21:49:12 +01:00
c729d3dc0e
gnu: r-zoo: Update to 1.7-14.
...
* gnu/packages/statistics.scm (r-zoo): Update to 1.7-14.
[propagated-inputs]: Remove r-lattice.
2016-12-29 21:49:11 +01:00
53941eb7a5
gnu: r-fastcluster: Update to 1.1.22.
...
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.22.
2016-12-29 21:49:11 +01:00
3a181dc46e
gnu: r-plotly: Update to 4.5.6.
...
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.6.
2016-12-29 21:49:11 +01:00
54aa6eb6ee
gnu: r-r-rsp: Update to 0.40.0.
...
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.40.0.
2016-12-29 21:49:11 +01:00
1a44753b95
gnu: r-r-utils: Update to 2.5.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.5.0.
2016-12-29 21:49:11 +01:00
62350c0797
gnu: r-coda: Update to 0.19-1.
...
* gnu/packages/statistics.scm (r-coda): Update to 0.19-1.
[propagated-inputs]: Remove r-lattice.
2016-12-29 21:49:11 +01:00
3607afbe4c
gnu: r-chron: Update to 2.3-48.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-48.
2016-12-29 21:49:11 +01:00
eaec5506ad
gnu: r-knitr: Update to 1.15.1.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.15.1.
[propagated-inputs]: Remove r-formatr.
2016-12-29 21:49:10 +01:00
fd7810d323
gnu: r-bh: Update to 1.62.0-1.
...
* gnu/packages/statistics.scm (r-bh): Update to 1.62.0-1.
2016-12-29 21:49:10 +01:00
dd4ae2950a
gnu: r-svglite: Update to 1.2.0.
...
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.0.
2016-12-29 21:49:10 +01:00
48a87bbe3b
gnu: r-gdtools: Update to 0.1.3.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.3.
2016-12-29 21:49:10 +01:00
ab01f1cdb1
gnu: r-ggplot2: Update to 2.2.0.
...
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.0.
[propagated-inputs]: Remove r-proto and r-svglite; add r-lazyeval and
r-tibble.
2016-12-29 21:49:10 +01:00
b94b03b7fa
gnu: r-scales: Update to 0.4.1.
...
* gnu/packages/statistics.scm (r-scales): Update to 0.4.1.
2016-12-29 21:49:10 +01:00
8a8fc31c6a
gnu: r-mgcv: Update to 1.8-16.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-16.
2016-12-29 21:49:10 +01:00
421f7772b4
gnu: r-qtl: Update to 1.40-8.
...
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.40-8.
2016-12-29 21:49:09 +01:00
2a1c1b8074
gnu: r-hms: Update to 0.3.
...
* gnu/packages/statistics.scm (r-hms): Update to 0.3.
2016-12-29 21:49:09 +01:00
85455a08f4
gnu: r-git2r: Update to 0.17.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.17.0.
2016-12-29 21:49:09 +01:00
abb6f0540e
gnu: r-ade4: Update to 1.7-5
...
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-5.
2016-12-29 21:49:09 +01:00
db1b38af4e
gnu: r-xml: Update to 3.98-1.5.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.5.
[propagated-inputs]: Remove r-rcurl.
2016-12-29 21:49:09 +01:00
773a50114c
gnu: r-sparsem: Update to 1.74.
...
* gnu/packages/statistics.scm (r-sparsem): Update to 1.74.
2016-12-29 21:49:09 +01:00
76ce7c3767
gnu: r-data-table: Update to 1.10.0.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.0.
[propagated-inputs]: Remove r-chron.
2016-12-29 21:49:09 +01:00
58b93ad5d9
gnu: r-estimability: Update to 1.2.
...
* gnu/packages/statistics.scm (r-estimability): Update to 1.2.
2016-12-29 21:49:08 +01:00
eebac90aa8
gnu: r-rcpp: Update to 0.12.8.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.8.
2016-12-29 21:49:08 +01:00
9cdf10f1c9
gnu: r-yaml: Update to 2.1.14.
...
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.14.
2016-12-29 21:49:08 +01:00
c616810720
gnu: r-htmlwidgets: Update to 0.8.
...
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.8.
2016-12-29 21:49:08 +01:00
f4ca28d911
gnu: r-curl: Update to 2.3.
...
* gnu/packages/web.scm (r-curl): Update to 2.3.
2016-12-29 21:49:08 +01:00
d3122150ca
gnu: r-servr: Update to 0.5.
...
* gnu/packages/web.scm (r-servr): Update to 0.5.
2016-12-29 21:49:08 +01:00
deb6276dda
Remove Emacs interface.
...
* emacs/guix-about.el: Remove file.
* emacs/guix-backend.el: Likewise.
* emacs/guix-base.el: Likewise.
* emacs/guix-buffer.el: Likewise.
* emacs/guix-build-log.el: Likewise.
* emacs/guix-command.el: Likewise.
* emacs/guix-config.el.in: Likewise.
* emacs/guix-devel.el: Likewise.
* emacs/guix-entry.el: Likewise.
* emacs/guix-external.el: Likewise.
* emacs/guix-geiser.el: Likewise.
* emacs/guix-guile.el: Likewise.
* emacs/guix-help-vars.el: Likewise.
* emacs/guix-helper.scm.in: Likewise.
* emacs/guix-history.el: Likewise.
* emacs/guix-hydra-build.el: Likewise.
* emacs/guix-hydra-jobset.el: Likewise.
* emacs/guix-hydra.el: Likewise.
* emacs/guix-info.el: Likewise.
* emacs/guix-init.el: Likewise.
* emacs/guix-license.el: Likewise.
* emacs/guix-list.el: Likewise.
* emacs/guix-location.el: Likewise.
* emacs/guix-main.scm: Likewise.
* emacs/guix-messages.el: Likewise.
* emacs/guix-pcomplete.el: Likewise.
* emacs/guix-popup.el: Likewise.
* emacs/guix-prettify.el: Likewise.
* emacs/guix-profiles.el: Likewise.
* emacs/guix-read.el: Likewise.
* emacs/guix-ui-generation.el: Likewise.
* emacs/guix-ui-license.el: Likewise.
* emacs/guix-ui-location.el: Likewise.
* emacs/guix-ui-package.el: Likewise.
* emacs/guix-ui-system-generation.el: Likewise.
* emacs/guix-ui.el: Likewise.
* emacs/guix-utils.el: Likewise.
* emacs/local.mk: Likewise.
* doc/emacs.texi: Likewise.
* doc/guix.texi: Remove cross-references to Emacs nodes.
(Package Management): Mention 'emacs-guix' package.
* doc/contributing.texi (The Perfect Setup): Remove the reference.
* doc/htmlxref.cnf: Add 'emacs-guix' URL.
* Makefile.am: Remove Emacs stuff.
* configure.ac: Likewise.
* gnu/packages/package-management.scm (guix-0.12.0)[native-inputs]:
Remove "emacs".
[propagated-inputs]: Remove "geiser" and "emacs-magit-popup".
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-12-29 23:40:24 +03:00
94a6f20baf
gnu: r-colorspace: Update to 1.3-2.
...
* gnu/packages/statistics.scm (r-colorspace): Update to 1.3-2.
2016-12-29 20:10:07 +01:00
2fd261a37a
gnu: Add r-statmod.
...
* gnu/packages/statistics.scm (r-statmod): New variable.
2016-12-29 19:54:59 +01:00
294304169a
gnu: Add r-ggbeeswarm.
...
* gnu/packages/statistics.scm (r-ggbeeswarm): New variable.
2016-12-29 19:54:59 +01:00
649d0c4841
gnu: Add r-sourcetools.
...
* gnu/packages/statistics.scm (r-sourcetools): New variable.
2016-12-29 19:54:59 +01:00
6ba279853c
gnu: Add r-beeswarm.
...
* gnu/packages/statistics.scm (r-beeswarm): New variable.
2016-12-29 19:54:59 +01:00
069581351b
gnu: Add r-vipor.
...
* gnu/packages/statistics.scm (r-vipor): New variable.
2016-12-29 19:54:58 +01:00
fc604eda3d
gnu: libpng-1.2: Update to 1.2.57 [security update].
...
* gnu/packages/image.scm (libpng-1.2): Update to 1.2.57.
[replacement]: New field.
2016-12-29 13:41:43 -05:00
322e724bfa
gnu: libpng: Fix a null pointer dereference [fixes security issue].
...
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libpng)[replacement]: New field.
(libpng/fixed): New variable.
2016-12-29 13:36:00 -05:00
Ricardo Wurmus