5275f69e6e
gnu: freexl: Update to 1.0.5 [security fixes].
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Fixes CVE-2018-7435, CVE-2018-7436, CVE-2018-7437, CVE-2018-7438 and
CVE-2018-7439.
* gnu/packages/xml.scm (freexl): Update to 1.0.5.
2018-03-04 17:54:40 +01:00
5b0b520e22
gnu: ceph: Update to 12.2.4.
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* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust to
upstream changes.
* gnu/packages/patches/ceph-disable-unittest-throttle.patch: Delete file.
* gnu/packages/patches/ceph-rocksdb-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/storage.scm (ceph): Update to 12.2.4.
[source](patches): Adjust.
[arguments]: Add "-DWITH_BABELTRACE=OFF" in #:configure-flags. Build with
CMAKE-3.11. Adjust file substitutions. Wrap 'ceph' executable.
[native-inputs]: Add GPERF.
[inputs]: Replace BOOST with BOOST-1.66. Add PYTHON2-PRETTYTABLE.
2018-03-04 17:54:40 +01:00
1568cc14fa
gnu: Add cmake@3.11.
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* gnu/packages/cmake.scm (cmake-3.11): New public variable.
2018-03-04 17:54:40 +01:00
bbce53c4b3
gnu: Add boost@1.66.0.
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* gnu/packages/boost.scm (boost-1.66): New public variable.
2018-03-04 17:54:40 +01:00
8293d21c66
gnu: java-snappy: Update to 1.1.7.
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* gnu/packages/compression.scm (java-snappy): Update to 1.1.7.
[arguments]: Use INVOKE instead of SYSTEM*. Avoid CMAKE dependency. Delete
Hadoop test. Enable fixed test.
[native-inputs]: Add JAVA-COMMONS-LANG and JAVA-COMMONS-IO.
2018-03-04 17:54:40 +01:00
5a43735722
gnu: snappy: Update to 1.1.7.
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* gnu/packages/compression.scm (snappy): Update to 1.1.7.
[source]: Change to git archive. Set file-name.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flags.
[description]: Fix infractions.
2018-03-04 17:54:39 +01:00
7fa9cca84a
gnu: rocksdb: Update to 5.10.4.
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* gnu/packages/databases.scm (rocksdb): Update to 5.10.4.
[source]: Substitute the unbundled copy of GNU Parallel.
[arguments]: Add "V=1" "USE_RTTI=1" and
"ROCKSDBTESTS_END=db_tailing_iter_test" to #:make-flags. Set #:test-target to
"check_some". Respect parallel jobs in 'build-release-libraries' phase and
rename to 'build'.
[license]: Update for changes in 5.5.4.
2018-03-04 17:54:39 +01:00
81ed306dee
gnu: inkscape: Disable duplicate icon cache generation.
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* gnu/packages/inkscape.scm (inkscape): Disable duplicate icon cache
generation.
2018-03-04 15:44:34 +01:00
692f6e457e
gnu: abiword: Disable duplicate icon cache generation.
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* gnu/packages/abiword.scm (abiword): Disable duplicate icon cache generation.
2018-03-04 15:43:46 +01:00
64cdd73c22
gnu: python-funcy: Fix tests.
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* gnu/packages/python.scm (python-funcy)[native-inputs]: Delete python-pytest-warnings.
2018-03-04 15:42:41 +01:00
329dabe13b
git-download: Fetch only the required commit, if possible.
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* guix/build/git.scm (git-fetch): Fetch only the required commit, if possible.
2018-03-04 14:43:38 +01:00
48c8622010
gnu: antlr3-3.3: Fix java8 issue.
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* gnu/packages/java.scm (antlr3-3.3)[source]: Add patch.
* gnu/packages/patches/antlr3-3_3-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-03-04 14:16:37 +01:00
4c763b4d67
gnu: antlr3-3.1: Fix java8 issue.
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* gnu/packages/java.scm (antlr3-3.1)[source]: Add patch.
* gnu/packages/patches/antlr3-3_1-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-03-04 14:13:47 +01:00
82f09c0e8e
gnu: go-github-com-aki237-nscjar: Declare a source file-name.
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* gnu/packages/golang.scm (go-github-com-aki237-nscjar)[source]: Declare
a source file-name.
2018-03-04 12:38:51 +02:00
6de107b0c9
gnu: go-github-com-davidjpeacock-cli: Declare a source file-name.
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* gnu/packages/golang.scm (go-github-com-davidjpeacock-cli)[source]:
Declare a source file-name.
2018-03-04 12:38:50 +02:00
fdbece74aa
gnu: go-github-com-alsm-ioprogress: Declare a source file-name.
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* gnu/packages/golang.scm (go-github-com-alsm-ioprogress)[source]:
Declare a source file-name.
2018-03-04 12:38:50 +02:00
661ad6f0c2
gnu: freegish: Declare a source file-name.
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* gnu/packages/games.scm (freegish)[source]: Declare a source file-name.
2018-03-04 12:38:50 +02:00
a1dc853ef4
gnu: disorderfs: Declare a source file-name.
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* gnu/packages/file-systems.scm (disorderfs)[source]: Declare a source
file-name.
2018-03-04 12:38:50 +02:00
aeb95f1f97
gnu: emacs-sly: Declare a source file-name.
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* gnu/packages/emacs.scm (emacs-sly)[source]: Declare a source
file-name.
2018-03-04 12:38:50 +02:00
5a6f7a6805
gnu: emacs-epl: Declare a source file-name.
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* gnu/packages/emacs.scm (emacs-epl)[source]: Declare a source
file-name.
2018-03-04 12:38:47 +02:00
c553b08b49
gnu: python-apsw: Use invoke.
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* gnu/packages/databases.scm (python-apsw)[arguments]: Use invoke.
2018-03-04 12:05:14 +02:00
f5c847ebd0
gnu: python-apsw: Declare a source file-name.
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* gnu/packages/databases.scm (python-apsw)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
c2c04cde9b
gnu: kurly: Declare a source file-name.
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* gnu/packages/curl.scm (kurly)[source]: Declare a source file-name.
2018-03-04 12:05:14 +02:00
277be74fa7
gnu: unshield: Declare a source file-name.
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* gnu/packages/compression.scm (unshield)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
eafe96ea9e
gnu: sfarkxtc: Declare a source file-name.
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* gnu/packages/compression.scm (sfarkxtc)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
da49d13710
gnu: piranha: Declare a source file-name.
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* gnu/packages/bioinformatics.scm (piranha)[source]: Declare a source
file-name.
2018-03-04 12:05:13 +02:00
d9a069c2d9
gnu: libdivsufsort: Declare a source file-name.
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* gnu/packages/bioinformatics.scm (libdivsufsort)[source]: Declare a
source file-name.
2018-03-04 12:05:13 +02:00
5110672474
gnu: seek: Declare a source file-name.
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* gnu/packages/bioinformatics.scm (seek)[source]: Declare a source
file-name.
2018-03-04 12:05:13 +02:00
b1d4026dfb
gnu: r-dropbead: Declare a source file-name.
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* gnu/packages/bioinformatics.scm (r-dropbead)[source]: Declare a source
file-name.
2018-03-04 12:05:10 +02:00
a1eb506cf3
gnu: faust@2: Declare a source file-name.
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* gnu/packages/audio.scm (faust@2)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
fdf359f82b
gnu: rubberband: Declare a source file-name.
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* gnu/packages/audio.scm (rubberband)[source]: Declare a source
file-name.
2018-03-04 11:01:40 +02:00
70aa07d296
gnu: qjackrcd: Declare a source file-name.
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* gnu/packages/audio.scm (qjackrcd)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
6677c99a8b
gnu: lv2-devel: Declare a source file-name.
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* gnu/packages/audio.scm (lv2-devel)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
35a01e67c8
gnu: lv2-mda-piano: Declare a source file-name.
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* gnu/packages/audio.scm (lv2-mda-piano)[source]: Declare a source
file-name.
2018-03-04 11:01:39 +02:00
a18ee793d7
gnu: papagayo: Declare a source file-name.
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* gnu/packages/animation.scm (papagayo)[source]: Declare a source
file-name.
2018-03-04 11:01:39 +02:00
7fc944273d
gnu: masscan: Declare a source file-name.
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* gnu/packages/admin.scm (masscan)[source]: Declare a source file-name.
2018-03-04 11:01:36 +02:00
bc037c1bd1
services: redis: Add a default-value to the redis-service-type.
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* gnu/packages/databases.scm (redis-service-type)[default-value]: Set
to (redis-configuration).
2018-03-03 23:52:26 +00:00
e903738f86
services: mysql: Add a default-value to the mysql-service-type.
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* gnu/services/databases.scm (mysql-service-type)[default-value]: Set
to (mysql-configuration).
2018-03-03 23:52:25 +00:00
1e6b9c6e16
services: postgresql: Add a default-value to the postgresql-service-type.
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* gnu/packages/databases.scm (<postgresql-configuration>)
[config-file,data-directory]: Add default.
(postgresql-service-type)[default-value]:
Set to (postgresql-configuration).
2018-03-03 23:52:23 +00:00
8b2219d847
linux-modules: Add module-aliases.
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* gnu/build/linux-modules.scm (module-aliases): New variable.
2018-03-03 23:40:02 +01:00
c94752ad22
gnu: tor: Update to 0.3.2.10 [security fixes].
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This release fixes TROVE-2018-001 (also tracked as CVE-2018-0490),
TROVE-2018-002 (CVE-2018-049), and TROVEs-2018-00{3,4} as well.
* gnu/packages/tor.scm (tor): Update to 0.3.2.10.
2018-03-03 21:31:08 +01:00
1adeef3194
gnu: Add dropseq-tools.
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* gnu/packages/bioinformatics.scm (dropseq-tools): New variable.
2018-03-03 21:28:05 +01:00
72299db9fe
gnu: Add java-picard-2.10.3.
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* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable.
2018-03-03 21:28:02 +01:00
719fa958f3
gnu: Add java-htsjdk-2.10.1.
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* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable.
2018-03-03 21:27:59 +01:00
9a599c17b7
gnu: Add java-htsjdk-latest.
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* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable.
2018-03-03 21:27:57 +01:00
9ac7db1830
gnu: Add java-biojava-alignment-4.0.
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* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable.
2018-03-03 21:27:56 +01:00
5528f9e8f0
gnu: Add java-biojava-phylo-4.0.
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* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable.
2018-03-03 21:27:53 +01:00
e44da58c16
gnu: Add java-biojava-core-4.0.
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* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable.
2018-03-03 21:27:51 +01:00
22c09c335b
gnu: Add java-biojava-alignment.
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* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable.
2018-03-03 21:27:48 +01:00
b28c803708
gnu: Add java-biojava-phylo.
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* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable.
2018-03-03 21:27:46 +01:00
Marius Bakke