b5ce25cc0e
gnu: r: Use uname from Guix
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* gnu/packages/statistics.scm (r): Use uname from Guix.
2016-10-27 16:37:24 +02:00
6178274d19
gnu: python-urllib3: Update to 1.18.1.
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* gnu/packages/python.scm (python-urllib3): Update to 1.18.1.
[home-page]: Use https URL.
2016-10-27 14:03:07 +01:00
245cc5f5d5
tests: Test installation with a RAID root partition.
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* gnu/tests/install.scm (%raid-root-os, %raid-root-os-source)
(%raid-root-installation-script, %test-raid-root-os): New variables.
2016-10-27 13:48:52 +02:00
49baaff4d2
file-systems: 'disk-partitions' detected partitions from mapped devices.
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Previously, partitions of mdadm- or cryptsetup-produced block devices
would not be returned by 'disk-partitions'.
* gnu/build/file-systems.scm (disk-partitions)[last-character]: New
procedure.
[partition?]: Add 'name' parameter and rewrite. Adjust caller.
* gnu/build/file-systems.scm (ENOENT-safe): Silently ignore ENOMEDIUM.
2016-10-27 13:48:52 +02:00
b800b8da21
tests: Add #:memory-size parameter for the command to run the installed OS.
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* gnu/tests/install.scm (qemu-command/writable-image): Add #:memory-size
parameter and honor it.
2016-10-27 13:48:52 +02:00
4ed2f515d6
mapped-devices: Use 'mdadm-static' in 'raid-device-mapping'.
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* gnu/system/mapped-devices.scm (open-raid-device, close-raid-device):
Use MDADM-STATIC instead of MDADM. Use 'file-append'.
2016-10-27 13:48:52 +02:00
631fda7e90
gnu: Add mdadm-static.
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* gnu/packages/linux.scm (mdadm-static): New variable.
2016-10-27 13:48:52 +02:00
7d876afdd8
gnu: libmikmod: Update to 3.3.10.
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* gnu/packages/sdl.scm (libmikmod): Update to 3.3.10.
2016-10-27 12:23:04 +03:00
355d8e873b
gnu: sdl2: Update to 2.0.5.
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* gnu/packages/sdl.scm (sdl2): Update to 2.0.5.
2016-10-27 12:23:04 +03:00
5d5790ce44
gnu: Use 'https' for libsdl urls.
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* gnu/packages/sdl.scm (sdl, sdl2, sdl-image, sdl-mixer, sdl-net)
(sdl-ttf, sdl2-image, sdl2-ttf)[source]: Use https.
[home-page]: Use https.
2016-10-27 12:23:03 +03:00
483b7ce7ae
gnu: mcelog: Update to 144.
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* gnu/packages/linux.scm (mcelog): Update to 144.
2016-10-27 11:03:34 +02:00
6270769dc2
gnu: btrfs-progs: Update to 4.8.2.
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* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
2016-10-27 11:03:34 +02:00
cd9ed6c1cb
gnu: gnupg: Add support for pcsc-lite.
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* gnu/packages/gnupg.scm (gnupg)[inputs]: Add pcsc-lite.
[arguments]: Rename phase 'patch-config-files' to 'patch-paths'. Patch
`scd/scdaemon.c' with absolute path of libpcsclite.so.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27 09:56:54 +01:00
a6b256affc
gnu: Add pcsc-lite.
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* gnu/packages/security-token.scm (pcsc-lite): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27 09:56:52 +01:00
8888fe826c
gnu: Add dbacl.
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* gnu/packages/textutils.scm (dbacl): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-27 11:42:39 +03:00
5fd84e288c
gnu: valgrind: Use 'modify-phases' syntax.
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* gnu/packages/valgrind.scm (valgrind)[arguments]: Use 'modify-phases'
syntax.
2016-10-27 11:42:38 +03:00
e68168eb87
gnu: valgrind: Update to 3.12.0.
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* gnu/packages/valgrind.scm (valgrind): Update to 3.12.0.
2016-10-27 11:42:29 +03:00
49a531f545
gnu: python-pathlib2: Add comment.
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As suggested by Efraim Flashner.
* gnu/packages/python.scm (python-pathlib2): Add comment.
2016-10-27 10:09:10 +02:00
522fc32ebd
gnu: shotwell: Update to 0.25.0.
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* gnu/packages/gnome.scm (shotwell): Update to 0.25.0.
[inputs]: Add gcr.
2016-10-26 20:10:05 -04:00
30b1267830
gnu: vdirsyncer: Update to 0.14.0.
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* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.0.
2016-10-26 19:56:15 -04:00
5479aa2b7c
tests: Test installation with store on a separate partition.
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This is a followup to 0f65f54ebd
2016-10-27 01:00:42 +02:00
5d73e30000
gnu: Add lci.
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* gnu/packages/lolcode.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 20:39:27 +03:00
8caeb11772
gnu: Add autossh.
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* gnu/packages/ssh.scm (autossh): New variable.
2016-10-26 11:22:17 -05:00
aba6463975
gnu: r: Update to 3.3.1.
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* gnu/packages/statistics.scm (r): Update to 3.3.1.
2016-10-26 18:14:17 +02:00
a8e893b0b8
gnu: r-matrixstats: Update to 0.51.0.
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* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
2016-10-26 16:23:32 +02:00
fd54f65e72
gnu: r-r-utils: Update to 2.4.0.
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* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
2016-10-26 16:23:32 +02:00
89242ea47f
gnu: r-irlba: Update to 2.1.2.
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* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
2016-10-26 16:23:31 +02:00
4f2ebc16ce
gnu: r-codetools: Update to 0.2-15.
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* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
2016-10-26 16:23:31 +02:00
cf738e961e
gnu: r-snow: Update to 0.4-2.
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* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
2016-10-26 16:23:31 +02:00
41bc22a7de
gnu: r-backports: Update to 1.0.4.
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* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
2016-10-26 16:23:30 +02:00
72263db73d
gnu: r-foreign: Update to 0.8-67.
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* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
2016-10-26 16:23:30 +02:00
130410d941
gnu: r-cluster: Update to 2.0.5.
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* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
2016-10-26 16:23:29 +02:00
e7622804aa
gnu: r-acepack: Update to 1.4.0.
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* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
2016-10-26 16:23:29 +02:00
bff4dc6324
gnu: r-r6: Update to 2.2.0.
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* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
2016-10-26 16:23:29 +02:00
e0a9093139
gnu: r-evaluate: Update to 0.10.
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* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
2016-10-26 16:23:28 +02:00
2d9da70bbe
gnu: r-reshape2: Update to 1.4.2.
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* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
2016-10-26 16:23:28 +02:00
c2a9e99134
gnu: r-stringi: Update to 1.1.2.
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* gnu/packages/statistics.scm (r-stringi): Update to 1.1.2.
2016-10-26 16:23:28 +02:00
03f72a1e1f
gnu: r-matrix: Update to 1.2-7.1.
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* gnu/packages/statistics.scm (r-matrix): Update to 1.2-7.1.
2016-10-26 16:23:27 +02:00
9e087a1fde
gnu: r-colorspace: Update to 1.2-7.
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* gnu/packages/statistics.scm (r-colorspace): Update to 1.2-7.
2016-10-26 16:23:27 +02:00
e1c2b7e2e1
gnu: r-jsonlite: Update to 1.1.
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* gnu/packages/web.scm (r-jsonlite): Update to 1.1.
2016-10-26 16:23:27 +02:00
2ffcd6607b
gnu: r-curl: Update to 2.2.
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* gnu/packages/web.scm (r-curl): Update to 2.2.
2016-10-26 16:23:26 +02:00
a46cc723ff
gnu: r-seqinr: Update to 3.3-3.
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* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-3.
2016-10-26 16:23:26 +02:00
062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0.
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* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
2016-10-26 16:23:25 +02:00
7397cd9e3f
gnu: armadillo: Update to 7.500.0.
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* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
2016-10-26 16:23:25 +02:00
8e1369f19a
gnu: r-rmarkdown: Update to 1.1.
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* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1.
[propagated-inputs]: Add r-evaluate, r-tibble.
2016-10-26 16:23:25 +02:00
c70271ec48
gnu: bioperl-minimal: Update to 1.7.0.
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* gnu/packages/bioinformatics.scm (bioperl-minimal): Update to 1.7.0.
2016-10-26 16:23:24 +02:00
39df253e2b
gnu: mupdf: Modify CVE-2016-8674 patch to apply to 1.9a.
...
The fix from upstream did not apply cleanly due to many context changes.
This was adapted by cloning mupdf 1.9a from git and fixing conflicts
after applying our patches and cherry-picking upstream commit 1e03c06.
This is a follow-up to 47a04fca99
2016-10-26 15:03:42 +01:00
b2a2232c33
gnu: python-certifi: Update to 2016.8.31.
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* gnu/packages/python.scm (python-certifi): Update to 2016.8.31.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 14:31:16 +03:00
07b1fb8675
gnu: security-token: Use 'license:' prefix.
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* gnu/packages/security-token.scm (libyubikey)[license]: Add prefix.
(ykclient)[license]: Add prefix.
2016-10-26 11:00:58 +01:00
f9c339603d
gnu: yubico.scm: Rename to security-token.scm.
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* gnu/packages/yubico.scm: Delete file.
* gnu/packages/security-token.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2016-10-26 10:45:49 +01:00
Roel Janssen