b6e27673e6
gnu: r-pheatmap: Update to 1.0.12.
...
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.12.
2019-01-12 23:35:12 +01:00
ca2bc7e037
gnu: r-mgcv: Update to 1.8-26.
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* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-26.
2019-01-12 23:35:12 +01:00
60f1bce09f
gnu: r-codetools: Update to 0.2-16.
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* gnu/packages/statistics.scm (r-codetools): Update to 0.2-16.
2019-01-12 23:35:12 +01:00
3dbd87f504
gnu: r-class: Update to 7.3-15.
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* gnu/packages/statistics.scm (r-class): Update to 7.3-15.
2019-01-12 23:35:12 +01:00
35cf4874cc
gnu: r-survival: Update to 2.43-3.
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* gnu/packages/statistics.scm (r-survival): Update to 2.43-3.
2019-01-12 23:35:12 +01:00
11a36548d9
gnu: r-argparse: Update to 2.0.0.
...
* gnu/packages/cran.scm (r-argparse): Update to 2.0.0.
[propagated-inputs]: Add r-r6; remove r-proto.
2019-01-12 23:35:12 +01:00
527c605598
gnu: r-callr: Update to 3.1.1.
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* gnu/packages/cran.scm (r-callr): Update to 3.1.1.
[propagated-inputs]: Remove r-base64enc.
2019-01-12 23:35:12 +01:00
b140569e18
gnu: r-readxl: Update to 1.2.0.
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* gnu/packages/cran.scm (r-readxl): Update to 1.2.0.
[propagated-inputs]: Add r-progress.
2019-01-12 23:35:11 +01:00
0aad198e2b
gnu: r-pracma: Update to 2.2.2.
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* gnu/packages/maths.scm (r-pracma): Update to 2.2.2.
2019-01-12 23:35:11 +01:00
44c69a536e
gnu: r-rcpparmadillo: Update to 0.9.200.5.0.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.5.0.
2019-01-12 23:35:11 +01:00
0e87bf0177
gnu: r-processx: Update to 3.2.1.
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* gnu/packages/cran.scm (r-processx): Update to 3.2.1.
[propagated-inputs]: Remove r-assertthat, r-crayon, and r-testthat.
2019-01-12 23:35:11 +01:00
2766d3436a
gnu: r-sjlabelled: Update to 1.0.16.
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* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.16.
[propagated-inputs]: Remove r-tibble and r-tidyselect.
2019-01-12 23:35:11 +01:00
813d9c51e3
gnu: r-broom: Update to 0.5.1.
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* gnu/packages/cran.scm (r-broom): Update to 0.5.1.
[propagated-inputs]: Add r-generics.
2019-01-12 23:35:11 +01:00
25c67ecfc6
gnu: Add r-generics.
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* gnu/packages/cran.scm (r-generics): New variable.
2019-01-12 23:35:11 +01:00
646e1ef059
gnu: r-curl: Update to 3.3.
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* gnu/packages/cran.scm (r-curl): Update to 3.3.
[inputs]: Add zlib.
[native-inputs]: Add pkg-config.
2019-01-12 23:35:11 +01:00
ef91530362
gnu: r-readr: Update to 1.3.1.
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* gnu/packages/statistics.scm (r-readr): Update to 1.3.1.
[propagated-inputs]: Add r-clipr and r-crayon.
2019-01-12 23:35:11 +01:00
48102ce123
gnu: r-mvabund: Update to 4.0.1.
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* gnu/packages/cran.scm (r-mvabund): Update to 4.0.1.
2019-01-12 23:35:11 +01:00
04a18a81ae
gnu: r-writexl: Update to 1.1.
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* gnu/packages/cran.scm (r-writexl): Update to 1.1.
2019-01-12 23:35:11 +01:00
a2315c6702
gnu: r-jsonlite: Update to 1.6.
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* gnu/packages/cran.scm (r-jsonlite): Update to 1.6.
2019-01-12 23:35:11 +01:00
ea600ff709
gnu: python-pillow: Update homepage.
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* gnu/packages/python.scm (python-pillow)[homepage]: Update URL.
2019-01-12 16:39:26 -05:00
acbf312573
gnu: python-pillow: Update to 5.4.0
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* gnu/packages/python.scm (python-pillow): Update to 5.4.0.
[arguments]: Add 'patch-ldconfig' phase.
2019-01-12 16:38:36 -05:00
146c6b62bf
gnu: Sort package modules in (gnu packages guile).
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* gnu/packages/guile.scm: Sort list of gnu/packages modules.
2019-01-12 12:14:31 +01:00
7d8baff97b
gnu: impressive: Update to 0.12.0.
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* gnu/packages/pdf.scm (impressive): Update to 0.12.0.
2019-01-12 12:14:31 +01:00
24155bf40d
gnu: Move Java compression packages to new module.
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* gnu/packages/compression.scm (bitshuffle-for-snappy): Export variable.
(java-snappy, java-snappy-1, java-iq80-snappy, java-jbzip2, java-tukaani-xz):
Move these variables from here...
* gnu/packages/java-compression.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/java.scm, gnu/packages/bioinformatics.scm: Adjust module
references.
2019-01-12 12:14:28 +01:00
1704367719
gnu: Add Bochs.
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* gnu/packages/virtualization.scm (bochs): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-01-11 17:09:20 -05:00
81c64748ba
gnu: Stellarium: Update to 0.18.3.
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* gnu/packages/astronomy.scm (stellarium): Update to 0.18.3.
[arguments]: Skip a broken test.
2019-01-11 17:07:55 -05:00
1ac0c1b899
gnu: opendht: Make argon2 a propagated input so that its .pc is found.
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* gnu/packages/networking.scm (opendht)[inputs]: Remove argon2.
[propagated-inputs]: Add it here.
2019-01-11 19:48:00 +01:00
e0fa641380
gnu: opendht: Use jsoncpp and restbed.
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* gnu/packages/crypto.scm (opendht): Move definition to networking.scm.
* gnu/packages/networking.scm (opendht)[inputs]: Add jsoncpp and restbed.
2019-01-11 19:48:00 +01:00
362fba83dd
gnu: Add restbed.
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* gnu/packages/networking.scm (restbed): New variable.
2019-01-11 19:48:00 +01:00
50e1843b3a
gnu: libupnp: Update to 1.6.25.
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* gnu/packages/upnp.scm (libupnp): Update to 1.6.25.
2019-01-11 19:48:00 +01:00
46b082f97f
gnu: kinit: Use KDEINIT5_LIBRARY_PATH to search for dynlibs.
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Using LIBRARY_PATH was introduced in
16b8aff85b
2019-01-11 16:35:52 +01:00
5a26f879c3
Revert "gnu: emacs-ghub: Update to 3.2.0."
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This change should be applied once we update our magit package.
This reverts commit b96f0e6ff9
2019-01-11 13:32:31 +01:00
88d7101798
gnu: Add emacs-general.
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[[PGP Signed Part:Good signature from 31BC8105F659D425 Gabriel Hondet <gabrielhondet@gmail.com> (trust undefined) created at 2019-01-06T10:42:43+0100 using RSA]]
* gnu/packages/emacs.scm (emacs-general): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-11 12:14:38 +01:00
84a2de36a1
services: Deprecate a few more service procedures.
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These procedures were already either undocumented (and de facto
deprecated) or documented as deprecated or redundant.
* gnu/services/base.scm (guix-service, guix-publish-service): Mark as
deprecated.
* gnu/services/mcron.scm (mcron-service): Likewise.
* gnu/services/networking.scm (tor-service): Likewise.
* doc/guix.texi (Scheduled Job Execution): Remove 'mcron-service' and
adjust example.
(Networking Services): Remove 'tor-service'.
* gnu/tests/base.scm (%mcron-os): Use 'mcron-service-type' instead of
'mcron-service'.
* gnu/tests/networking.scm (%tor-os): Use 'tor-service-type' instead of
'tor-service'.
* tests/guix-system.sh: Likewise.
2019-01-11 12:14:38 +01:00
babfd9447d
tests: Nitpick on Docker test.
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This is a followup to 7d8a4eeacc
2019-01-11 12:14:37 +01:00
cb2ad4f508
gnu: wine-staging: Hard-code vulkan loader.
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* gnu/packages/wine.scm (wine-staging-patchset-data): Fix indentation.
* gnu/packages/wine.scm (wine-staging)[arguments]: Add 'wrap-executable phase.
* gnu/packages/wine.scm (wine64-staging)[arguments]: Add 'wrap-executable
phase. Copy the real wine-preloader instead of the wrapped version.
2019-01-11 11:15:13 +01:00
e7c6bc45ed
gnu: jamm: Remove broken "build" phase.
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* gnu/packages/bioinformatics.scm (jamm)[arguments]: Remove "build" phase.
2019-01-11 06:08:43 +01:00
9757b57f4e
services: docker: Update comment.
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* gnu/services/docker.scm (docker-shepherd-service): Update comment.
2019-01-11 02:53:28 +01:00
adf0b482eb
gnu: gexiv2: Update to 0.10.10.
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* gnu/packages/gnome.scm (gexiv2): Update to 0.10.10.
2019-01-10 18:45:41 -05:00
d4d9a1ece0
gnu: Update texlive packages.
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* guix/build-system/texlive.scm (%texlive-tag, %texlive-revision): Update to
texlive-2018.2, revision 49435.
* gnu/packages/tex.scm (texlive-dvips, texlive-generic-unicode-data,
texlive-generic-dehyph-exptl, texlive-generic-hyph-utf8, texlive-fontname,
texlive-fonts-cm, texlive-tex-plain, texlive-latex-base,
texlive-latex-graphics, texlive-latex-graphics, texlive-latex-oberdiek,
texlive-latex-tools, texlive-latex-l3kernel, texlive-latex-l3packages,
texlive-latex-fontspec, texlive-latex-amsmath, texlive-latex-amscls,
texlive-latex-babel, texlive-latex-cyrillic, texlive-latex-eqparbox,
texlive-latex-ifplatform, texlive-latex-etoolbox, texlive-latex-galois,
texlive-latex-polyglossia, texlive-tex-texinfo, texlive-latex-changebar,
texlive-latex-fancyhdr, texlive-latex-overpic, texlive-latex-parskip,
texlive-metapost, texlive-latex-ucs, texlive-generic-pdftex,
texlive-latex-media9, texlive-latex-ocgx2, texlive-latex-koma-script,
texlive-generic-listofitems, texlive-bibtex, texlive-context-base): Update
hashes.
(texlive-latex-fontspec)[arguments]: Remove custom build target.
(texlive-latex-dinbrief)[arguments]: Add build phase "fix-encoding-error".
(texlive-latex-xkeyval): New variable.
(texlive-latex-pstool)[source]: Fetch from new location.
[build-system]: Use trivial-build-system.
[arguments]: Write simple builder.
[propagated-inputs]: Add texlive-latex-l3kernel, texlive-latex-tools, and
texlive-latex-xkeyval.
[synopsis]: Fix typo.
2019-01-10 22:43:09 +01:00
c954fe6622
gnu: irssi: Update to 1.1.2 [fixes CVE-2019-5882].
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* gnu/packages/irc.scm (irssi): Update to 1.1.2.
2019-01-10 16:05:42 -05:00
ffcd282702
gnu: docker: Booby-trap "Command" and "LookPath" calls.
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* gnu/packages/docker.scm (docker)[arguments]<#:phases>[patch-paths]:
Booby-trap "Command" and "LookPath" calls.
2019-01-10 21:29:53 +01:00
6a6e5d84da
gnu: opendht: Update to 1.8.1.
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* gnu/packages/crypto.scm (opendht): Update to 1.8.1.
[source]: Remove snippet that deletes argon2, which is no longer bundled.
[arguments]: Add "--with-argon2" to use system argon2.
[license]: Update to GPLv3+ following the README and source headers.
2019-01-10 21:09:06 +01:00
6fe6840dab
gnu: Add libsecp256k1.
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* gnu/packages/crypto.scm (libsecp256k1): New variable.
2019-01-10 21:09:06 +01:00
35ac66eec1
gnu: crypto++: Update to 8.0.0.
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* gnu/packages/crypto.scm (crypto++): Update to 8.0.0.
[arguments]: Build shared library.
[arguments]: Generate .pc file.
2019-01-10 21:09:06 +01:00
8b0c174415
services: docker: Use more minimal service requrements.
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* gnu/services/docker.scm (docker-service-type)[requirement]: Add
file-system-/sys/fs/cgroup/blkio, file-system-/sys/fs/cgroup/cpu,
file-system-/sys/fs/cgroup/cpuset, file-system-/sys/fs/cgroup/devices,
file-system-/sys/fs/cgroup/memory. Remove elogind.
2019-01-10 19:17:49 +01:00
d3a0e74d6a
services: docker: Clarify service-extension shepherd-root-service-type.
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* gnu/services/docker.scm (docker-service-type)[extensions]: Clarify
service-extension shepherd-root-service-type.
2019-01-10 19:17:48 +01:00
dbd346ae88
gnu: sct: Correct license.
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* gnu/packages/xdisorg.scm (sct)[license]: Change to non-copyleft.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-10 14:59:23 +01:00
65a67bf711
services: Use 'define-deprecated' for service procedures.
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* gnu/services/base.scm (urandom-seed-service, gpm-service): Define
using 'define-deprecated'.
* gnu/services/messaging.scm (bitlbee-service): Likewise.
* gnu/services/networking.scm (dhcp-client-service): Likewise.
(ntp-service): Likewise.
* gnu/services/xorg.scm (slim-service): Likewise.
(gdm-service): Likewise.
2019-01-10 14:59:23 +01:00
7d4b3e1e2b
gnu: Add pwsafe
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* gnu/packages/password-utils.scm (pwsafe): New variable
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-10 14:59:22 +01:00
Ricardo Wurmus