64df08f0cf
Merge remote-tracking branch 'origin/master' into core-updates
2017-10-01 22:16:22 +03:00
5a7deb1174
gnu: Add BLIS.
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* gnu/packages/maths.scm (make-blis): New procedure.
(blis, ignorance): New variables.
(blis/x86_64): New macro.
(blis-sandybridge, blis-haswell, blis-knl): New variables.
2017-09-07 15:38:56 +02:00
c4d4a77923
gnu: pt-scotch32: use keyword arguments from "scotch32"
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*gnu/packages/maths.scm (pt-scotch32) [arguments]: substitute keyword
arguments from "scotch32" package, ensuring that the INTSIZE32 macro is
set
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-04 15:24:04 +02:00
43d01672a1
gnu: netcdf: Fix reproducibility issue; remove unneeded references.
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* gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded
'Configured On' date; truncate reference to compiler store item.
2017-09-01 08:34:32 +02:00
e464b4550e
gnu: hdf4: Avoid unneeded store references to compilers.
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* gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to
truncate hashes of compiler store items.
2017-09-01 08:34:32 +02:00
fd0378a147
gnu: hdf5: Avoid unneeded store references to compilers.
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* gnu/packages/maths.scm (hdf5) [arguments]: Add phase to patch
"libhdf5.settings", removing references to the C/C++/Fortran compilers.
2017-09-01 08:34:31 +02:00
e3a1a1deda
gnu: hdf5: Add output for fortran interface.
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* gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran.
[outputs]: Add "fortran".
[arguments]: Enable Fortran compilation; add "/lib" directory of the fortran
output to the runpath of the Fortran libs; add a 'split phase to move
all Fortran-related files to the the Fortran output store location.
2017-09-01 08:34:24 +02:00
5789566aa2
gnu: openblas: Enable tests.
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* gnu/packages/maths.scm (openblas)[arguments]: Enable tests.
2017-08-31 18:49:49 +02:00
1b8de87c98
gnu: openblas: Update to 0.2.20.
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* gnu/packages/maths.scm (openblas): Update to 0.2.20.
2017-08-31 18:49:27 +02:00
1c25a52c4a
gnu: Add pt-scotch32.
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* gnu/packages/maths.scm (pt-scotch32): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-31 12:34:50 +02:00
1c39f3b877
gnu: Add "scotch32".
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* gnu/packages/maths.scm (scotch32): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-31 12:34:50 +02:00
e0fbf37350
gnu: coda: Update to 2.18.2.
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* gnu/packages/maths.scm (coda): Update to 2.18.2.
2017-08-30 09:20:52 +02:00
3c8ba11a97
Update e-mail for Kei Kebreau.
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* .mailmap: Map kei@openmailbox.org to current address.
* gnu/local.mk: Replace kei@openmailbox.org to current address.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/calendar.scm: Likewise.
* gnu/packages/check.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/game-development.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnustep.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/hexedit.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/textutils.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/web-browsers.scm: Likewise.
* gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: Likewise.
2017-08-29 20:13:24 -04:00
72e2815d18
Merge branch 'core-updates'
2017-08-26 15:15:49 +02:00
cf684d87d7
gnu: z3: Build Python bindings.
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* gnu/packages/maths.scm (z3): Add python bindings.
[build-system]: Change to cmake-build-system.
[arguments]: Remove "changedir" phase. Add "bootstrap" and
"make-test-z3" phases; replace the "check" phase.
Add #:configure-flags. Remove #:test-target.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:53 +02:00
2718a9cd09
Merge branch 'master' into core-updates
2017-08-21 02:40:37 +02:00
953a12fa9b
gnu: hdf4: Fix building on aarch64.
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* gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve
detection and support for aarch64-linux.
2017-08-16 09:33:11 +03:00
09ec5a0f0c
Merge branch 'master' into core-updates
2017-08-15 03:10:14 -04:00
ac2ddcc66f
gnu: wxmaxima: Update to 17.05.1.
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* gnu/packages/maths.scm (wxmaxima): Update to 17.05.1.
[arguments]: Put "autoconf" phase after the "unpack" phase. Fix
indentation.
2017-08-13 18:18:27 -04:00
cc294bcee6
Merge branch 'master' into core-updates
2017-08-09 17:25:31 -04:00
d84b09e937
gnu: dealii: Update to 8.5.0.
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* gnu/packages/maths.scm (dealii): Update to 8.5.0.
[arguments]: Delete 'hint-example-prefix phase, which would need adjusting for
this version. Users can use e.g. 'export DEAL_II_DIR=$GUIX_ENVIRONMENT'.
Adjust configuration flags.
2017-08-09 01:56:53 -05:00
bd5b5ac0c5
gnu: suitesparse: Update to 4.5.5.
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* gnu/packages/maths.scm (suitesparse): Update to 4.5.5.
[source]: Add 'modules' and 'snippet' field to remove bundled source.
[arguments]: Remove 'prepare-out' phase. Adjust #:make-flags for metis.
Make build parallel, since it now appears to be safe.
[inputs]: Add metis.
2017-08-09 01:56:53 -05:00
2509522c4f
gnu: suitesparse: Use modify-phases.
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* gnu/packages/maths.scm (suitesparse)[arguments]: Use modify-phases.
2017-08-09 01:56:53 -05:00
9731c412e9
gnu: petsc, slepc: Use 'parallel-job-count'.
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* gnu/packages/maths.scm (petsc, slepc)[arguments]: Set #:make-flags to
override default unlimited '-j'.
(petsc)[arguments]: Scrub build machine cores from installed files in
'clean-local-references' phase.
2017-08-09 01:56:53 -05:00
baeaf8821d
gnu: slepc: Update to 3.7.4.
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* gnu/packages/maths.scm (slepc): Update to 3.7.4.
[source]: Use direct source link. Remove 'file-name' field.
2017-08-09 01:56:52 -05:00
41a46a5035
gnu: petsc: Update to 3.7.6.
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* gnu/packages/maths.scm (petsc): Update to 3.7.6.
2017-08-09 01:56:46 -05:00
2d9495da23
Merge branch 'master' into core-updates
2017-08-07 16:45:16 -04:00
83fef82b7c
gnu: cubicle: Fix evaluation.
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* gnu/packages/maths.scm (cubicle)[native-inputs]: Retrieve WHICH from
(gnu packages base).
2017-08-07 12:02:33 +02:00
f167595ba1
Merge branch 'master' into core-updates
2017-08-06 00:23:20 -04:00
3d5d87a3ae
gnu: Add cubicle.
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* gnu/packages/maths.scm (cubicle): New variable.
2017-08-05 10:11:42 +02:00
0f2eee0d96
gnu: r-pracma: Update to 2.0.7.
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* gnu/packages/maths.scm (r-pracma): Update to 2.0.7.
2017-08-03 17:53:44 +02:00
a8ead6f91b
gnu: vc: Limit to x86_64 and i686.
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* gnu/packages/maths.scm (vc)[supported-systems]: New field.
2017-08-03 13:34:18 +03:00
0abf526420
gnu: hdf4: Update to 4.12.13.
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* gnu/packages/maths.scm (hdf4): Update to 4.12.13.
2017-08-02 14:08:24 +02:00
aa9780daf9
Merge branch 'master' into core-updates
2017-08-01 23:42:28 +02:00
313844d9dc
gnu: Add z3.
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* gnu/packages/maths.scm (z3): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-29 23:03:47 +02:00
e0b9e377f1
Merge branch 'master' into core-updates
2017-07-28 00:34:13 +02:00
1cae188e61
gnu: glpk: Update to 4.63.
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* gnu/packages/maths.scm (glpk): Update to 4.63.
2017-07-26 10:15:54 +03:00
0093b1262b
gnu: maxima: Ensure binutils are available at runtime.
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* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax.
Modify 'post-install' phase.
2017-07-25 07:58:55 -04:00
6b2eafaaa8
Revert "gnu: maxima: Ensure gcc is available at runtime."
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This reverts commit f2fa86cc825ea8dbf0c9
2017-07-25 07:58:46 -04:00
6c1a317e29
Merge branch 'master' into core-updates
2017-07-23 03:42:12 -04:00
7c0d4c3a6b
gnu: lapack: Fix hash of release 3.7.1
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Apparently the release was modified (cleaned-up) in-place. An issue was opened
at https://github.com/Reference-LAPACK/lapack-release/issues/4 .
* gnu/packages/maths.scm (lapack): Fix sha256 hash.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-20 00:54:51 +02:00
c8eb2b8c60
Merge branch 'master' into core-updates
2017-07-10 14:37:53 -04:00
5143517c99
gnu: wxmaxima: Update to 17.05.0.
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* gnu/packages/maths.scm (wxmaxima): Update to 17.05.0.
[source]: Update URL and add file-name.
[native-inputs]: Add autoconf, automake and gettext-minimal.
[arguments]: Add 'autoconf' phase.
2017-07-08 17:05:55 -04:00
f2fa86cc82
gnu: maxima: Ensure gcc is available at runtime.
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* gnu/packages/maths.scm (maxima)[inputs]: Add gcc.
[arguments]: Use modify-phases syntax. Add 'set-gcc-path' phase.
2017-07-07 20:47:28 -04:00
3a4d5df2b0
gnu: itpp: Use texlive-tiny and ghostscript.
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* gnu/packages/maths.scm (itpp)[native-inputs]: Replace texlive-minimal with
texlive-tiny; add ghostscript.
2017-06-30 13:57:42 +02:00
612a387fe7
gnu: gnuplot: Use texlive-tiny.
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* gnu/packages/maths.scm (gnuplot)[native-inputs]: Replace texlive-minimal
with texlive-tiny.
2017-06-30 13:57:41 +02:00
1024c8119c
Merge branch 'master' into core-updates
2017-06-29 18:02:17 -04:00
3ab869b63f
gnu: lapack: Install libraries to PREFIX/lib, not PREFIX/lib64.
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This fixes a regression introduced in
ef39a17717
2017-06-29 15:21:17 +02:00
26599d692c
gnu: scotch: Build in 64-bit mode on 64-bit machines.
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* gnu/packages/maths.scm (scotch)[arguments] <configure>: Add
"INTSIZE64" CPP flag.
2017-06-26 18:16:11 +02:00
11f0c4e871
gnu: lapack: Build with LAPACKE_WITH_TMG=ON.
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* gnu/packages/maths.scm (lapack)[arguments]: Pass
"-DLAPACKE_WITH_TMG=ON".
2017-06-26 18:16:11 +02:00
Efraim Flashner