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30612 Commits

Author SHA1 Message Date
Efraim Flashner e33498b868
gnu: cran.scm: Add missing module. 
This is a follow-up to 9ebfdcd36c.

* gnu/packages/cran.scm: Import pkg-config.
 2018-04-22 09:43:36 +03:00
Ricardo Wurmus 2cf42ec611
gnu: r-httpuv: Update to 1.4.1. 
* gnu/packages/web.scm (r-httpuv): Update to 1.4.1.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus c36ce47635
gnu: r-seurat: Update to 2.3.0. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.0.
[propagated-inputs]: Add r-cluster, r-dosnow, r-fitdistrplus, r-foreach,
r-lmtest, r-png, and r-rann.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 3cf9ae2f75
gnu: Add r-dosnow. 
* gnu/packages/cran.scm (r-dosnow): New variable.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 6ab97ed56a
gnu: r-lambda-r: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.2.
[arguments]: Remove.
[native-inputs]: Remove.
[propagated-inputs]: Add r-formatr.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 5150a52d03
gnu: r-httpuv: Update to 1.4.0. 
* gnu/packages/web.scm (r-httpuv): Update to 1.4.0.
[propagated-inputs]: Add r-bh, r-later, and r-promises.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus d9d66ba963
gnu: Add r-promises. 
* gnu/packages/cran.scm (r-promises): New variable.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 284179bbb3
gnu: Add r-later. 
* gnu/packages/cran.scm (r-later): New variable.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 500224cb4c
gnu: r-car: Update to 3.0-0. 
* gnu/packages/statistics.scm (r-car): Update to 3.0-0.
[propagated-inputs]: Add r-abind, r-cardata, r-lme4, r-maptools, r-nlme, and
r-rio.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 08dac3d9e6
gnu: Add r-maptools. 
* gnu/packages/cran.scm (r-maptools): New variable.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus c9920f2597
gnu: Add r-rio. 
* gnu/packages/cran.scm (r-rio): New variable.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 4b1f7a3e90
gnu: Add r-openxlsx. 
* gnu/packages/cran.scm (r-openxlsx): New variable.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 0edd2fd186
gnu: r-ggridges: Update to 0.5.0. 
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.0.
[propagated-inputs]: Add r-withr.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 4f18423358
gnu: r-ddalpha: Update to 1.3.2. 
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.2.
[propagated-inputs]: Add r-geometry.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 9604429d7b
gnu: Add r-geometry. 
* gnu/packages/cran.scm (r-geometry): New variable.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus ce4e81cb86
gnu: Add r-magic. 
* gnu/packages/cran.scm (r-magic): New variable.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus f1c7a24280
gnu: Add r-cardata. 
* gnu/packages/statistics.scm (r-cardata): New variable.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 2acc0e5f8f
gnu: r-gsubfn: Update to 0.7. 
* gnu/packages/cran.scm (r-gsubfn): Update to 0.7.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 7bd6ecd7fa
gnu: r-psych: Update to 1.8.3.3. 
* gnu/packages/cran.scm (r-psych): Update to 1.8.3.3.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus d087f47d61
gnu: r-quantmod: Update to 0.4-13. 
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-13.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus cb9f404187
gnu: r-tinytex: Update to 0.5. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.5.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 1d310349bb
gnu: r-xts: Update to 0.10-2. 
* gnu/packages/cran.scm (r-xts): Update to 0.10-2.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 2ab8cbcd1f
gnu: r-stringdist: Update to 0.9.4.7. 
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.4.7.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 9ee81a36aa
gnu: r-prodlim: Update to 2018.04.18. 
* gnu/packages/cran.scm (r-prodlim): Update to 2018.04.18.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 3e00e3a885
gnu: r-lava: Update to 1.6.1. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.1.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 9ebfdcd36c
gnu: r-rmpi: Update to 0.6-7. 
* gnu/packages/cran.scm (r-rmpi): Update to 0.6-7.
[native-inputs]: Add pkg-config.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus cf0da489ff
gnu: r-globaloptions: Update to 0.0.13. 
* gnu/packages/cran.scm (r-globaloptions): Update to 0.0.13.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 9f17c0560f
gnu: r-bindrcpp: Update to 0.2.2. 
* gnu/packages/cran.scm (r-bindrcpp): Update to 0.2.2.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus eb575e95fb
gnu: r-bindr: Update to 0.1.1. 
* gnu/packages/cran.scm (r-bindr): Update to 0.1.1.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus dfd7299957
gnu: r-rcpp: Update to 0.12.16. 
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.16.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 0e94780446
gnu: r-plogr: Update to 0.2.0. 
* gnu/packages/cran.scm (r-plogr): Update to 0.2.0.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 1d612cefc8
gnu: r-readxl: Update to 1.1.0. 
* gnu/packages/cran.scm (r-readxl): Update to 1.1.0.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 41e8bd77f3
gnu: r-selectr: Update to 0.4-1. 
* gnu/packages/cran.scm (r-selectr): Update to 0.4-1.
[propagated-inputs]: Add r-r6.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus aeca5f0c5b
gnu: r-scran: Update to 1.6.9. 
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.9.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 80323c3c13
gnu: r-hitc: Update to 1.22.1. 
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.22.1.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus b6d7deca55
gnu: r-ldblock: Update to 1.8.1. 
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.8.1.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus fb1dcfac46
gnu: r-erma: Update to 0.10.1. 
* gnu/packages/bioinformatics.scm (r-erma): Update to 0.10.1.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 8defca1d94
gnu: r-gprofiler: Update to 0.6.6. 
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.6.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus fc6d3e2606
gnu: r-ggbio: Update to 1.26.1. 
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.26.1.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 0bd5c7b859
gnu: r-genomicalignments: Update to 1.14.2. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.2.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 4207770218
gnu: r-dexseq: Update to 1.24.4. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.4.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 3db5d04ccc
gnu: r-vegan: Update to 2.5-1. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-1.
[propagated-inputs]: Add r-knitr.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 2ef5ab8749
gnu: r-mapproj: Update to 1.2.6. 
* gnu/packages/geo.scm (r-mapproj): Update to 1.2.6.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 5895f238d7
gnu: r-maps: Update to 3.3.0. 
* gnu/packages/geo.scm (r-maps): Update to 3.3.0.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 8cf7b28ffe
gnu: r-igraph: Update to 1.2.1. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.1.
[inputs]: Add glpk and zlib.
[propagated-inputs]: Remove r-irlba.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 2bcf5fd337
gnu: r-subplex: Update to 1.5-4. 
* gnu/packages/maths.scm (r-subplex): Update to 1.5-4.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 61c868e1f5
gnu: r-shinydashboard: Update to 0.7.0. 
* gnu/packages/web.scm (r-shinydashboard): Update to 0.7.0.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 4fe0efddfe
gnu: r-htmlwidgets: Update to 1.2. 
* gnu/packages/web.scm (r-htmlwidgets): Update to 1.2.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 75a40e89d9
gnu: r-lme4: Update to 1.1-17. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-17.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 30d76d442a
gnu: r-futile-options: Update to 1.0.1. 
* gnu/packages/statistics.scm (r-futile-options): Update to 1.0.1.
 2018-04-21 23:07:52 +02:00