Commit Graph

25777 Commits

Author SHA1 Message Date
Eric Bavier 9ce587f231
gnu: libhilbert: Remove package.
This package's source and webpage has disappeared for some time, and upstream
projects (e.g. libmesh) seem to be bundling it, so we remove it for now.

* gnu/packages/maths.scm (libhilbert): Remove variable.
2017-10-24 20:16:49 -05:00
Eric Bavier 958b5a1caa
gnu: slepc: Update to 3.8.0.
* gnu/packages/maths.scm (slepc): Update to 3.8.0.
2017-10-24 20:16:49 -05:00
Eric Bavier 6fec298d3e
gnu: petsc: Update to 3.8.0.
* gnu/packages/maths.scm (petsc): Update to 3.8.0
[native-inputs]: Remove perl, which is no longer needed.
2017-10-24 20:16:42 -05:00
Ben Woodcroft 6f141eff47
gnu: bwa: Update to 0.7.17.
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.17.
2017-10-25 09:29:22 +10:00
Ben Woodcroft ae6e00f6f9
gnu: bwa: Change source URL to GitHub.
* gnu/packages/bioinformatics.scm (bwa)[source]: Change source URL to
GitHub.
2017-10-25 09:29:22 +10:00
Petter 85c991b029
gnu: Add perl-moox-options.
* gnu/packages/perl.scm (perl-moox-options): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:25 +02:00
Ricardo Wurmus 68998abd4f
gnu: perl-getopt-long-descriptive: Update to 0.100.
* gnu/packages/perl.scm (perl-getopt-long-descriptive): Update to 0.100.
[native-inputs]: Add perl-cpan-meta-check.
2017-10-24 23:30:24 +02:00
Petter b936ddf312
gnu: Add perl-moox-configfromfile.
* gnu/packages/perl.scm (perl-moox-configfromfile): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:24 +02:00
Petter 8df39f572c
gnu: Add perl-moox-file-configdir.
* gnu/packages/perl.scm (perl-moox-file-configdir): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:24 +02:00
Petter 658a4976fa
gnu: Add perl-moox-cmd.
* gnu/packages/perl.scm (perl-moox-cmd): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:24 +02:00
Ricardo Wurmus b547ef1d09
gnu: perl-list-moreutils: Update to 0.426.
* gnu/packages/perl.scm (perl-list-moreutils): Update to 0.426.
[arguments]: Work around dotless @INC problem.
[native-inputs]: Add perl-test-leaktrace; remove perl-inc-latest and
perl-test-writevariants.
[propagated-inputs]: Add perl-list-moreutils-xs.
2017-10-24 23:30:24 +02:00
Ricardo Wurmus 189bfb1112
gnu: Add perl-list-moreutils-xs.
* gnu/packages/perl.scm (perl-list-moreutils-xs): New variable.
2017-10-24 23:30:24 +02:00
Petter 544dc8d46b
gnu: Add perl-libintl-perl.
* gnu/packages/perl.scm (perl-libintl-perl): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
Petter 180411e3f4
gnu: Add perl-file-configdir.
* gnu/packages/perl.scm (perl-file-configdir): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
Petter 987232e67d
gnu: Add perl-data-record.
* gnu/packages/perl.scm (perl-data-record): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
Petter 8dca3bde0e
gnu: Add perl-data-printer.
* gnu/packages/perl.scm (perl-data-printer): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
Petter 857d75388b
gnu: Add perl-clone-pp.
* gnu/packages/perl.scm (perl-clone-pp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
Petter 0de1e5e557
gnu: Add perl-data.
* gnu/packages/perl.scm (perl-data): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 23:30:23 +02:00
ng0 6bf249211d
gnu: gnurl: Update to 7.56.1.
* gnu/packages/gnunet.scm (gnurl): Update to 7.56.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-10-24 17:19:15 -04:00
Efraim Flashner 648c896ad3
gnu: screen: Update to 4.6.2.
* gnu/packages/screen.scm (screen): Update to 4.6.2.
2017-10-24 21:26:19 +03:00
Leo Famulari ae7e24c421
gnu: mupdf: Fix CVE-2017-{14685,14686,14687}.
* gnu/packages/patches/mupdf-CVE-2017-14685.patch,
gnu/packages/patches/mupdf-CVE-2017-14686.patch,
gnu/packages/patches/mupdf-CVE-2017-14687.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
2017-10-24 13:44:34 -04:00
Leo Famulari 6dcc8239be
gnu: icu4c: Fix CVE-2017-14952.
* gnu/packages/patches/icu4c-CVE-2017-14952.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c)[replacement]: New field.
(icu4c-fixed): New variable.
2017-10-24 13:10:35 -04:00
Leo Famulari c330c27f7f
gnu: syncthing: Split into two outputs.
* gnu/packages/syncthing.scm (syncthing)[outputs]: New field.
[arguments]: Change the 'install' and 'install-docs' phases to install to the
two outputs.
2017-10-24 13:10:35 -04:00
Leo Famulari 1899ef0b83
gnu: syncthing: Use install-source? to disable installing the source code.
* gnu/packages/syncthing.scm (syncthing): Set #:install-source? #f
instead of deleting the install-source phase.
2017-10-24 13:10:35 -04:00
Leo Famulari c10851cf91
build-system/go: Parameterize installing the source code.
* guix/build-system/go.scm (go-build): Add install-source? key.
* guix/build/go-build-system.scm (install-source): Check if
install-source? is true.
2017-10-24 13:10:34 -04:00
Leo Famulari 1c37f839fb
build-system/go: Strip the Go binaries with the native tool.
* guix/build/go-build-system.scm (build): Tell the Go linker to strip some
symbol tables and debugging information.
2017-10-24 13:10:34 -04:00
Petter 22473f6964
gnu: Add perl-types-path-tiny.
* gnu/packages/perl.scm (perl-types-path-tiny): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
Petter 35aaf4b1bd
gnu: Add perl-type-tiny-xs.
* gnu/packages/perl.scm (perl-type-tiny-xs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
Petter 237edb6d1f
gnu: Add perl-test-taint.
* gnu/packages/perl.scm (perl-test-taint): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
Petter cb2f48e7f2
gnu: Add perl-term-size-any.
* gnu/packages/perl.scm (perl-term-size-any): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
Petter fcbc997e03
gnu: Add perl-term-size-perl.
* gnu/packages/perl.scm (perl-term-size-perl): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:32 +02:00
Petter a1798ee3c7
gnu: Add perl-devel-hide.
* gnu/packages/perl.scm (perl-devel-hide): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:31 +02:00
Petter 8ae0558aad
gnu: Add perl-sort-naturally.
* gnu/packages/perl.scm (perl-sort-naturally): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:31 +02:00
Petter b6cd89084d
gnu: Add perl-proc-invokeeditor.
* gnu/packages/perl.scm (perl-proc-invokeeditor): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:31 +02:00
Petter b44ecca691
gnu: Add perl-archive-extract.
* gnu/packages/compression.scm (perl-archive-extract): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 18:38:31 +02:00
Ricardo Wurmus 5aeb661134
gnu: Add perl-gnupg-interface.
* gnu/packages/gnupg.scm (perl-gnupg-interface): New variable.

Co-authored-by: Petter <petter@mykolab.ch>
2017-10-24 18:38:31 +02:00
Leo Famulari 6ee4fd2ae1
gnu: borg: Split up the monolithic man page.
* gnu/packages/backup.scm (borg)[arguments]: Rewrite 'install-docs'
phase to install one man page per Borg sub-command.
2017-10-24 10:21:51 -04:00
Leo Famulari db4411b42b
gnu: python-docutils: Update to 0.14.
* gnu/packages/python.scm (python-docutils, python2-docutils): Update to 0.14.
2017-10-24 10:21:51 -04:00
Petter 85f225fbf7
gnu: Add perl-xml-twig.
* gnu/packages/xml.scm (perl-xml-twig): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 10:40:49 +02:00
Marius Bakke 91f2daa58d
gnu: curl: Update replacement to 7.56.1 [fixes CVE-2017-1000257].
* gnu/packages/curl.scm (curl-7.56.0): Rename to ...
(curl-7.56.1): ... this.  Update to 7.56.1.
(curl)[replacement]: Adjust accordingly.
2017-10-24 08:09:47 +02:00
Danny Milosavljevic fc9a93cbf9
gnu: claws-mail: Re-enable vcalendar.
* gnu/packages/mail.scm (claws-mail): Use module (gnu packages calendar).
[inputs]: Add libical.
2017-10-24 08:07:24 +02:00
Marius Bakke 62d48234e2
gnu: git: Update to 2.14.3.
* gnu/packages/version-control.scm (git): Update to 2.14.3.
2017-10-24 07:55:34 +02:00
Ricardo Wurmus 306556528e
gnu: Add sorcer.
* gnu/packages/music.scm (sorcer): New variable.
2017-10-24 07:54:43 +02:00
Ricardo Wurmus 2809a355b6
gnu: Add papagayo.
* gnu/packages/animation.scm (papagayo): New variable.
2017-10-24 07:54:43 +02:00
Ludovic Courtès 2900665888
pull: Hide compilation warnings.
* guix/build/pull.scm (build-guix): Bind 'current-warning-port' to a
void port.
2017-10-23 17:08:51 -07:00
Ludovic Courtès ce33c3af76
pull: Add (guix build compile) to the mix.
Fixes <https://bugs.gnu.org/28956>.
Reported by Leo Famulari <leo@famulari.name>.

* build-aux/build-self.scm (build): Add (guix build compile) to
 #:modules.
* guix/build/pull.scm (build-guix): Wrap 'compile-files' call in
'with-directory-excursion'.  Strip "./" from FILES when passing it to
'compile-files'.
2017-10-23 17:08:50 -07:00
Petter 7a04dddd26
gnu: Add perl-html-tidy.
* gnu/packages/web.scm (perl-html-tidy): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:06:21 +02:00
Petter 0a9bdd9583
gnu: Add tidyp.
* gnu/packages/web.scm (tidyp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:06:20 +02:00
Petter efc8f7d03d
gnu: Add perl-lwp-online.
* gnu/packages/web.scm (perl-lwp-online): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:05:28 +02:00
Petter 9e88b210f6
gnu: Add perl-xml-handler-yawriter.
* gnu/packages/xml.scm (perl-xml-handler-yawriter): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-24 00:04:15 +02:00