Commit Graph

12484 Commits

Author SHA1 Message Date
Efraim Flashner 13c4d8746b
gnu: python-wtforms: Skip optional tests.
* gnu/packages/python.scm (python-wtforms)[arguments]: Add a phase
preventing tests from failing when optional tests aren't run.
2016-10-27 22:13:22 +03:00
Efraim Flashner b6e0804953
gnu: lightning: Add missing input.
* gnu/packages/assembly.scm (lightning)[native-inputs]: Add zlib.
2016-10-27 21:13:05 +03:00
Roel Janssen 7500e42b3e
gnu: Add r-mutationalpatterns.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): New variable.
2016-10-27 20:07:05 +02:00
Efraim Flashner 377bfbc1f8
gnu: gxmessage: Add missing input.
* gnu/packages/gxmessage.scm (gxmessage)[native-inputs]: Add gtk+3-bin.
2016-10-27 21:03:08 +03:00
Efraim Flashner 327be74720
gnu: jasper: Updat eto 1.900.16.
* gnu/packages/image.scm (japer): Update to 1.900.16.
2016-10-27 20:14:17 +03:00
Kei Kebreau 233fbb6102
gnu: windowmaker: Add support for more image formats.
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Add giflib, libpng,
and libtiff.
2016-10-27 10:51:05 -04:00
Roel Janssen b5ce25cc0e
gnu: r: Use uname from Guix
* gnu/packages/statistics.scm (r): Use uname from Guix.
2016-10-27 16:37:24 +02:00
Marius Bakke 6178274d19
gnu: python-urllib3: Update to 1.18.1.
* gnu/packages/python.scm (python-urllib3): Update to 1.18.1.
[home-page]: Use https URL.
2016-10-27 14:03:07 +01:00
Ludovic Courtès 245cc5f5d5
tests: Test installation with a RAID root partition.
* gnu/tests/install.scm (%raid-root-os, %raid-root-os-source)
(%raid-root-installation-script, %test-raid-root-os): New variables.
2016-10-27 13:48:52 +02:00
Ludovic Courtès 49baaff4d2
file-systems: 'disk-partitions' detected partitions from mapped devices.
Previously, partitions of mdadm- or cryptsetup-produced block devices
would not be returned by 'disk-partitions'.

* gnu/build/file-systems.scm (disk-partitions)[last-character]: New
procedure.
[partition?]: Add 'name' parameter and rewrite.  Adjust caller.
* gnu/build/file-systems.scm (ENOENT-safe): Silently ignore ENOMEDIUM.
2016-10-27 13:48:52 +02:00
Ludovic Courtès b800b8da21
tests: Add #:memory-size parameter for the command to run the installed OS.
* gnu/tests/install.scm (qemu-command/writable-image): Add #:memory-size
parameter and honor it.
2016-10-27 13:48:52 +02:00
Ludovic Courtès 4ed2f515d6
mapped-devices: Use 'mdadm-static' in 'raid-device-mapping'.
* gnu/system/mapped-devices.scm (open-raid-device, close-raid-device):
Use MDADM-STATIC instead of MDADM.  Use 'file-append'.
2016-10-27 13:48:52 +02:00
Ludovic Courtès 631fda7e90
gnu: Add mdadm-static.
* gnu/packages/linux.scm (mdadm-static): New variable.
2016-10-27 13:48:52 +02:00
Efraim Flashner 7d876afdd8
gnu: libmikmod: Update to 3.3.10.
* gnu/packages/sdl.scm (libmikmod): Update to 3.3.10.
2016-10-27 12:23:04 +03:00
Efraim Flashner 355d8e873b
gnu: sdl2: Update to 2.0.5.
* gnu/packages/sdl.scm (sdl2): Update to 2.0.5.
2016-10-27 12:23:04 +03:00
Efraim Flashner 5d5790ce44
gnu: Use 'https' for libsdl urls.
* gnu/packages/sdl.scm (sdl, sdl2, sdl-image, sdl-mixer, sdl-net)
(sdl-ttf, sdl2-image, sdl2-ttf)[source]: Use https.
[home-page]: Use https.
2016-10-27 12:23:03 +03:00
Tobias Geerinckx-Rice 483b7ce7ae
gnu: mcelog: Update to 144.
* gnu/packages/linux.scm (mcelog): Update to 144.
2016-10-27 11:03:34 +02:00
Tobias Geerinckx-Rice 6270769dc2
gnu: btrfs-progs: Update to 4.8.2.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
2016-10-27 11:03:34 +02:00
Mike Gerwitz cd9ed6c1cb
gnu: gnupg: Add support for pcsc-lite.
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add pcsc-lite.
[arguments]: Rename phase 'patch-config-files' to 'patch-paths'.  Patch
`scd/scdaemon.c' with absolute path of libpcsclite.so.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27 09:56:54 +01:00
Mike Gerwitz a6b256affc
gnu: Add pcsc-lite.
* gnu/packages/security-token.scm (pcsc-lite): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27 09:56:52 +01:00
ng0 8888fe826c
gnu: Add dbacl.
* gnu/packages/textutils.scm (dbacl): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-27 11:42:39 +03:00
Efraim Flashner 5fd84e288c
gnu: valgrind: Use 'modify-phases' syntax.
* gnu/packages/valgrind.scm (valgrind)[arguments]: Use 'modify-phases'
syntax.
2016-10-27 11:42:38 +03:00
Efraim Flashner e68168eb87
gnu: valgrind: Update to 3.12.0.
* gnu/packages/valgrind.scm (valgrind): Update to 3.12.0.
2016-10-27 11:42:29 +03:00
Hartmut Goebel 49a531f545
gnu: python-pathlib2: Add comment.
As suggested by Efraim Flashner.

* gnu/packages/python.scm (python-pathlib2): Add comment.
2016-10-27 10:09:10 +02:00
Leo Famulari f02fb6dd6b
gnu: btrfs-progs: Update to 4.8.2.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
2016-10-27 00:43:37 -04:00
Leo Famulari 9045c086df
gnu: blender: Update to 2.78a.
* gnu/packages/graphics.scm (blender): Update to 2.78a.
2016-10-27 00:30:47 -04:00
Leo Famulari fad8bf977d
gnu: python-s3transfer: Run the tests.
* gnu/packages/python.scm (python-s3transfer, python2-s3transfer)[arguments]:
Use python-nose to run the tests.
[native-inputs]: Add python-mock and python-nose.
2016-10-26 21:41:28 -04:00
Leo Famulari 522fc32ebd
gnu: shotwell: Update to 0.25.0.
* gnu/packages/gnome.scm (shotwell): Update to 0.25.0.
[inputs]: Add gcr.
2016-10-26 20:10:05 -04:00
Leo Famulari 30b1267830
gnu: vdirsyncer: Update to 0.14.0.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.0.
2016-10-26 19:56:15 -04:00
Ludovic Courtès 5479aa2b7c
tests: Test installation with store on a separate partition.
This is a followup to 0f65f54ebd.

* gnu/tests/install.scm (%separate-store-os, %separate-store-os-source)
(%separate-store-installation-script, %test-separate-store-os): New
variables.
2016-10-27 01:00:42 +02:00
Leo Famulari 02c73adcdf
Merge branch 'master' into core-updates 2016-10-26 19:00:06 -04:00
Leo Famulari a19da40630
gnu: perl-www-curl: Fix build failure.
* gnu/packages/patches/perl-www-curl-remove-symbol.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-www-curl)[source]: Use it.
2016-10-26 18:44:16 -04:00
ng0 5d73e30000
gnu: Add lci.
* gnu/packages/lolcode.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 20:39:27 +03:00
Christopher Allan Webber 8caeb11772
gnu: Add autossh.
* gnu/packages/ssh.scm (autossh): New variable.
2016-10-26 11:22:17 -05:00
Ricardo Wurmus aba6463975
gnu: r: Update to 3.3.1.
* gnu/packages/statistics.scm (r): Update to 3.3.1.
2016-10-26 18:14:17 +02:00
Ricardo Wurmus a8e893b0b8
gnu: r-matrixstats: Update to 0.51.0.
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
2016-10-26 16:23:32 +02:00
Ricardo Wurmus fd54f65e72
gnu: r-r-utils: Update to 2.4.0.
* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
2016-10-26 16:23:32 +02:00
Ricardo Wurmus 89242ea47f
gnu: r-irlba: Update to 2.1.2.
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
2016-10-26 16:23:31 +02:00
Ricardo Wurmus 4f2ebc16ce
gnu: r-codetools: Update to 0.2-15.
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
2016-10-26 16:23:31 +02:00
Ricardo Wurmus cf738e961e
gnu: r-snow: Update to 0.4-2.
* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
2016-10-26 16:23:31 +02:00
Ricardo Wurmus 41bc22a7de
gnu: r-backports: Update to 1.0.4.
* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
2016-10-26 16:23:30 +02:00
Ricardo Wurmus 72263db73d
gnu: r-foreign: Update to 0.8-67.
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
2016-10-26 16:23:30 +02:00
Ricardo Wurmus 130410d941
gnu: r-cluster: Update to 2.0.5.
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
2016-10-26 16:23:29 +02:00
Ricardo Wurmus e7622804aa
gnu: r-acepack: Update to 1.4.0.
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
2016-10-26 16:23:29 +02:00
Ricardo Wurmus bff4dc6324
gnu: r-r6: Update to 2.2.0.
* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
2016-10-26 16:23:29 +02:00
Ricardo Wurmus e0a9093139
gnu: r-evaluate: Update to 0.10.
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
2016-10-26 16:23:28 +02:00
Ricardo Wurmus 2d9da70bbe
gnu: r-reshape2: Update to 1.4.2.
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
2016-10-26 16:23:28 +02:00
Ricardo Wurmus c2a9e99134
gnu: r-stringi: Update to 1.1.2.
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.2.
2016-10-26 16:23:28 +02:00
Ricardo Wurmus 03f72a1e1f
gnu: r-matrix: Update to 1.2-7.1.
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-7.1.
2016-10-26 16:23:27 +02:00
Ricardo Wurmus 9e087a1fde
gnu: r-colorspace: Update to 1.2-7.
* gnu/packages/statistics.scm (r-colorspace): Update to 1.2-7.
2016-10-26 16:23:27 +02:00
Ricardo Wurmus e1c2b7e2e1
gnu: r-jsonlite: Update to 1.1.
* gnu/packages/web.scm (r-jsonlite): Update to 1.1.
2016-10-26 16:23:27 +02:00
Ricardo Wurmus 2ffcd6607b
gnu: r-curl: Update to 2.2.
* gnu/packages/web.scm (r-curl): Update to 2.2.
2016-10-26 16:23:26 +02:00
Ricardo Wurmus a46cc723ff
gnu: r-seqinr: Update to 3.3-3.
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-3.
2016-10-26 16:23:26 +02:00
Ricardo Wurmus 062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
2016-10-26 16:23:25 +02:00
Ricardo Wurmus 7397cd9e3f
gnu: armadillo: Update to 7.500.0.
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
2016-10-26 16:23:25 +02:00
Ricardo Wurmus 8e1369f19a
gnu: r-rmarkdown: Update to 1.1.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1.
[propagated-inputs]: Add r-evaluate, r-tibble.
2016-10-26 16:23:25 +02:00
Ricardo Wurmus c70271ec48
gnu: bioperl-minimal: Update to 1.7.0.
* gnu/packages/bioinformatics.scm (bioperl-minimal): Update to 1.7.0.
2016-10-26 16:23:24 +02:00
Marius Bakke 39df253e2b
gnu: mupdf: Modify CVE-2016-8674 patch to apply to 1.9a.
The fix from upstream did not apply cleanly due to many context changes.
This was adapted by cloning mupdf 1.9a from git and fixing conflicts
after applying our patches and cherry-picking upstream commit 1e03c06.

This is a follow-up to 47a04fca99.

* gnu/packages/patches/mupdf-CVE-2016-8674.patch: Adapt to 1.9a.
2016-10-26 15:03:42 +01:00
ng0 b2a2232c33
gnu: python-certifi: Update to 2016.8.31.
* gnu/packages/python.scm (python-certifi): Update to 2016.8.31.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 14:31:16 +03:00
Marius Bakke 07b1fb8675
gnu: security-token: Use 'license:' prefix.
* gnu/packages/security-token.scm (libyubikey)[license]: Add prefix.
(ykclient)[license]: Add prefix.
2016-10-26 11:00:58 +01:00
Marius Bakke f9c339603d
gnu: yubico.scm: Rename to security-token.scm.
* gnu/packages/yubico.scm: Delete file.
* gnu/packages/security-token.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2016-10-26 10:45:49 +01:00
Marius Bakke 7a6213cbd7
gnu: offlineimap: Install documentation.
* gnu/packages/mail.scm (offlineimap)[native-inputs]: Add asciidoc and
libxslt.
[arguments]: Add phases 'build-documentation' and
'install-documentation' to build and install manpages. Also remove
unneeded key 'inputs' from 'wrap-binary' phase.
2016-10-26 10:45:49 +01:00
Marius Bakke d2a9b531fb
gnu: notmuch: Update to 0.23.1.
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/mail.scm (notmuch): Update to 0.23.1. Remove patch.
2016-10-26 10:45:49 +01:00
Efraim Flashner 8f5f6c922f
gnu: vlc: Add x265 support.
* gnu/packages/video.scm (vlc)[inputs]: Add x265.
2016-10-26 12:19:19 +03:00
Efraim Flashner e3cb00d210
gnu: gst-plugins-bad: Add x265 support.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add x265.
2016-10-26 12:19:18 +03:00
Efraim Flashner d505801a06
gnu: ffmpeg: Add x265 support.
* gnu/packages/video.scm (ffmpeg)[inputs]: Add x265.
[arguments]: Add '--enable-libx265' flag.
2016-10-26 12:19:18 +03:00
Efraim Flashner 7bc7ffc243
gnu: Add x265.
* gnu/packages/video.scm (x265): New variable.
2016-10-26 12:19:18 +03:00
ng0 1df790d50d
gnu: Add psyclpc.
* gnu/packages/psyc.scm (psyclpc): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 11:29:35 +03:00
Ludovic Courtès 19262a718e
gnu: opensmtpd: Fix 'license' field.
* gnu/packages/mail.scm (opensmtpd)[license]: Use LICENSE:OPENSSL, not
OPENSSL.
(opensmtpd-extras)[license]: Likewise.
2016-10-26 10:19:18 +02:00
Ricardo Wurmus 59198f8fff
gnu: r-genomationdata: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.6.0.
2016-10-26 09:28:23 +02:00
Ricardo Wurmus e357bec836
gnu: r-bamsignals: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.6.0.
2016-10-26 09:28:23 +02:00
Ricardo Wurmus 53ca52f013
gnu: r-rhtslib: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.6.0.
[native-inputs]: Add autoconf.
2016-10-26 09:28:23 +02:00
Ricardo Wurmus da22da862b
gnu: r-zlibbioc: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.20.0.
2016-10-26 09:28:22 +02:00
Ricardo Wurmus 809251e164
gnu: r-motifrg: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.18.0.
2016-10-26 09:28:22 +02:00
Ricardo Wurmus 21d6c7a3e1
gnu: r-seqlogo: Update to 1.40.0.
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.40.0.
2016-10-26 09:28:22 +02:00
Ricardo Wurmus 51c3c4900f
gnu: r-genomation: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.6.0.
[propagated-inputs]: Add r-rcpp, r-htslib, r-runit, r-s4vectors.
[inputs]: Add zlib.
2016-10-26 09:28:21 +02:00
Ricardo Wurmus e92dd6f5e0
gnu: r-seqpattern: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.6.0.
[propagated-inputs]: Add r-kernsmooth.
2016-10-26 09:28:21 +02:00
Ricardo Wurmus acf6f7e0c3
gnu: r-impute: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.48.0.
2016-10-26 09:28:21 +02:00
Ricardo Wurmus 3d74c04451
gnu: r-bsgenome: Update to 1.42.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.42.0.
2016-10-26 09:28:20 +02:00
Ricardo Wurmus 30ec4de738
gnu: r-topgo: Update to 2.26.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.26.0.
[propagated-inputs]: Add r-dbi.
2016-10-26 09:28:20 +02:00
Ricardo Wurmus 3587b464fc
gnu: r-graph: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.52.0.
2016-10-26 09:28:19 +02:00
Ricardo Wurmus d1b1587cad
gnu: r-go-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.4.0.
2016-10-26 09:28:19 +02:00
Ricardo Wurmus b17aac083e
gnu: r-genomicfeatures: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.0.
2016-10-26 09:28:18 +02:00
Ricardo Wurmus 6a45fd9aea
gnu: r-rtracklayer: Update to 1.34.0.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.0.
2016-10-26 09:28:18 +02:00
Ricardo Wurmus 4ab32f0cd6
gnu: r-genomicalignments: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
1.10.0.
2016-10-26 09:28:18 +02:00
Ricardo Wurmus 08da08d296
gnu: r-summarizedexperiment: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
1.4.0.
2016-10-26 09:28:17 +02:00
Ricardo Wurmus c0ccef41ae
gnu: r-rsamtools: Update to 1.26.1.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.26.1.
2016-10-26 09:28:17 +02:00
Ricardo Wurmus 47d39b6e7a
gnu: r-biostrings: Update to 2.42.0.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.0.
2016-10-26 09:28:17 +02:00
Ricardo Wurmus 89559a124e
gnu: r-biocparallel: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.0.
2016-10-26 09:28:16 +02:00
Ricardo Wurmus 9405333186
gnu: r-biomart: Update to 2.30.0.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.30.0.
2016-10-26 09:28:16 +02:00
Ricardo Wurmus e45dc05781
gnu: r-annotationdbi: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.0.
2016-10-26 09:28:16 +02:00
Ricardo Wurmus 464870caf7
gnu: r-biobase: Update to 2.34.0.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.34.0.
2016-10-26 09:28:15 +02:00
Ricardo Wurmus 92a740afac
gnu: r-genomicranges: Update to 1.26.1.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.1.
[propagated-inputs]: Add r-iranges, r-s4vectors.
2016-10-26 09:28:15 +02:00
Ricardo Wurmus 1d048589ca
gnu: r-xvector: Update to 0.14.0.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.0.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus 753bc32b8e
gnu: r-limma: Update to 3.30.0.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.0.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus 37d96f1dde
gnu: r-variantannotation: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.20.0.
[propagated-inputs]: Add r-biobase, r-biostrings, r-iranges,
r-rtracklayer, r-s4vectors, r-xvector.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus 5e48005fa9
gnu: r-edger: Update to 3.16.0.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.0.
[propagated-inputs]: Add r-locfit.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus dece310a25
gnu: r-genomeinfodb: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.0.
2016-10-26 09:28:13 +02:00
Ricardo Wurmus 7f354dafb1
gnu: r-iranges: Update to 2.8.0.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.0.
2016-10-26 09:28:13 +02:00
Ricardo Wurmus b120c5f3a2
gnu: r-s4vectors: Update to 0.12.0.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.0.
2016-10-26 09:28:13 +02:00
Ricardo Wurmus 22c5d736af
gnu: r-dnacopy: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.48.0.
2016-10-26 09:28:12 +02:00
Ricardo Wurmus 5c7b04e0c3
gnu: r-biocinstaller: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.24.0.
2016-10-26 09:28:12 +02:00
Ricardo Wurmus f0b297e17b
gnu: r-biocgenerics: Update to 0.20.0.
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.20.0.
2016-10-26 09:28:11 +02:00
Ricardo Wurmus c9b5046a18
gnu: r-grohmm: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.8.0.
2016-10-26 09:28:11 +02:00
Ricardo Wurmus 1265d3877b
gnu: r-systempiper: Update to 1.8.1.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.8.1.
2016-10-26 09:28:11 +02:00
Ricardo Wurmus b87b41a74d
gnu: r-shortread: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.0.
2016-10-26 09:28:10 +02:00
Ricardo Wurmus ae6899b683
gnu: r-gostats: Update to 2.40.0.
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.40.0.
2016-10-26 09:28:10 +02:00
Ricardo Wurmus 816599c1e7
gnu: r-category: Update to 2.40.0.
* gnu/packages/bioinformatics.scm (r-category): Update to 2.40.0.
2016-10-26 09:28:10 +02:00
Ricardo Wurmus 558d02c361
gnu: r-gseabase: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.36.0.
2016-10-26 09:28:09 +02:00
Ricardo Wurmus 700c780dcf
gnu: r-rbgl: Update to 1.50.0.
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.50.0.
2016-10-26 09:28:09 +02:00
Ricardo Wurmus 55cd914c3d
gnu: r-annotationforge: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.0.
[propagated-inputs]: Add r-rcurl.
2016-10-26 09:28:09 +02:00
Ricardo Wurmus e1db8dd813
gnu: r-deseq2: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.0.
2016-10-26 09:28:08 +02:00
Ricardo Wurmus 1e66e71921
gnu: r-genefilter: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.56.0.
2016-10-26 09:28:08 +02:00
Ricardo Wurmus 6faa2a48f0
gnu: r-geneplotter: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.52.0.
2016-10-26 09:28:08 +02:00
Ricardo Wurmus 9beba74f66
gnu: r-annotate: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.0.
2016-10-26 09:28:07 +02:00
Ricardo Wurmus 557a4b8e61
gnu: Add r-kernsmooth.
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2016-10-26 09:28:07 +02:00
Ricardo Wurmus f9875807e8
gnu: emacs-emms-player-mpv: Update to 0.0.10.
* gnu/packages/emacs.scm (emacs-emms-player-mpv): Update to 0.0.10.
2016-10-26 09:28:07 +02:00
Leo Famulari 6c18c4f603
gnu: elfutils: Update to 0.167.
* gnu/packages/elf.scm (elfutils): Update to 0.167.
2016-10-25 22:11:59 -04:00
Leo Famulari 3de764f7a7
gnu: gtk+-2: Update to 2.24.31 [fixes CVE-2013-7447].
* gnu/packages/gtk.scm (gtk+-2): Update to 2.24.31.
2016-10-25 16:33:13 -04:00
Kei Kebreau 47a04fca99
gnu: mupdf: Fix CVE-2016-8674.
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf): Use it.
2016-10-25 12:50:50 -04:00
Thomas Danckaert 4b12fe5cab
gnu: coda: Remove bundled libraries.
* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-25 14:56:37 +02:00
Ludovic Courtès 8ce84bf1f5
svg: Autoload Guile-RSVG and Guile-Cairo.
Fixes compilation by 'guix pull' where Guile-{RSVG,Cairo} are missing.
Reported by Efraim Flashner.

* gnu/build/svg.scm: Use 'module-autoload!' rather than 'module-use!'.
2016-10-25 13:57:28 +02:00
Mark H Weaver e9a19bde40
gnu: linux-libre@4.1: Update to 4.1.35.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.35.  Remove
patch.
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-24 22:53:18 -04:00
Mark H Weaver c4a667bfa5
gnu: Add missing module import to (gnu packages gl).
This is a followup to commit f1267c872f.

* gnu/packages/gl.scm: Import (gnu packages).
2016-10-24 22:45:38 -04:00
Mark H Weaver f1267c872f
gnu: mesa: Fix 'wayland-egl-symbols-check' on MIPS.
* gnu/packages/patches/mesa-wayland-egl-symbols-check-mips.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa)[source]: Add patch when building on MIPS.
2016-10-24 22:28:32 -04:00
Ludovic Courtès ffde82c9ec
system: grub: Use Guile-{RSVG,Cairo} instead of Inkscape + ImageMagick.
Based on a suggestion by Andy Wingo at
<https://lists.gnu.org/archive/html/guix-devel/2015-08/msg00753.html>.

* gnu/build/svg.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/system/grub.scm (svg->png): Add #:width and #:height.  Rewrite to
use (gnu build svg).
(resize-image): Remove.
(grub-background-image): Adjust accordingly.
2016-10-25 01:21:28 +02:00
Leo Famulari 19a65e7c8c
gnu: perl-eval-closure: Update to 0.14.
* gnu/packages/perl.scm (perl-eval-closure): Update to 0.14.
2016-10-24 17:29:25 -04:00
Thomas Danckaert d91025e3d0
gnu: Add coda.
* gnu/packages/maths.scm (coda): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:14:52 +02:00
Thomas Danckaert d3c4f3bb00
gnu: Add hdf-eos2.
* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:05:20 +02:00
Amirouche 3b5783fcd9
gnu: Add guile-bytestructures
* gnu/packages/guile.scm (guile-bytestructures): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 22:51:52 +02:00
Julien Lepiller 8c00b83818
services: nginx: Virtual hosts are first-class configuration items.
* gnu/services/web.scm (<nginx-vhost-configuration>): New record type.
(config-domain-strings): New procedure.
(config-index-strings): New procedure.
(default-nginx-vhost-config): New procedure.
(default-nginx-config): Add vhost support and temporary directories
(nginx-activation): Create temporary directories
(nginx-service): Add vhost-list key.
* doc/guix.texi (Web Services): Document 'nginx-vhost-configuration'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 22:50:40 +02:00
Leo Famulari 4691428059
gnu: twolame: Make the test suite compatible with Perl 5.24.
* gnu/packages/audio.scm (twolame)[source]: Add snippet to fix test.
2016-10-24 16:19:25 -04:00
Efraim Flashner 405be8dceb
gnu: efl: Update to 1.18.2.
* gnu/packages/enlightenment.scm (efl): Update to 1.18.2.
2016-10-24 22:01:00 +03:00
Kei Kebreau c201b28bfa
gnu: red-eclipse: Update to 1.5.6.
* gnu/packages/games.scm (red-eclipse): Update to 1.5.6.
[arguments]: Adjust phases.
2016-10-24 13:25:39 -04:00
ng0 9c798f9036
gnu: Add whois.
* gnu/packages/networking.scm (whois): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-24 17:40:53 +01:00
宋文武 bd1b1e0517
gnu: gnumeric: Use 'glib-or-gtk-build-system'.
Reported by Pjotr Prins <pjotr.public12@thebird.nl>.

* gnu/packages/gnome.scm (gnumeric)[build-systems]: Switch to
GLIB-OR-GTK-BUILD-SYSTEM.
2016-10-24 19:19:34 +08:00
Leo Famulari 02cfea6627
gnu: musl: Fix CVE-2016-8859.
* gnu/packages/patches/musl-CVE-2016-8859.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/musl.scm (musl)[source]: Use it.
2016-10-23 18:08:17 -04:00
Kei Kebreau 8e3017cc65
gnu: windowmaker: Update to 0.95.7.
* gnu/packages/gnustep.scm (windowmaker): Update to 0.95.7.
2016-10-23 17:52:28 -04:00
Arun Isaac 0f6b6cb996
gnu: gajim: Update to 0.16.6.
* gnu/packages/messaging.scm (gajim): Update to 0.16.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:40:50 -04:00
Arun Isaac d6465efaa9
gnu: gajim: License is "version 3 only".
* gnu/packages/messaging.scm (gajim)[license]: Change to GPL3.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:40:50 -04:00
ng0 2dfa90721d
gnu: weechat: Update to 1.6.
* gnu/packages/irc.scm (weechat): Update to 1.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:10:22 -04:00
Leo Famulari ef73acd30d
gnu: diffoscope: Disable failing test.
* gnu/packages/package-management.scm (diffoscope)[arguments]: Add
'disable-failing-test' phase.
2016-10-23 17:05:09 -04:00
Leo Famulari 1bafad5661
gnu: audit: Use GnuTLS instead of OpenSSL.
* gnu/packages/admin.scm (audit)[inputs]: Replace openssl with gnutls.
2016-10-23 16:38:21 -04:00
Mark H Weaver 93cb98d481
gnu: icu4c: On MIPS, pass --with-data-packaging=archive to configure.
* gnu/packages/icu4c.scm (icu4c)[arguments]: On MIPS, pass
"--with-data-packaging=archive" to configure.
2016-10-23 14:18:26 -04:00
Mark H Weaver ca0635b4ba
Merge branch 'master' into core-updates 2016-10-23 14:16:39 -04:00
Danny Milosavljevic 903276d066
gnu: Add python-flask-sqlalchemy.
* gnu/packages/python.scm (python-flask-sqlalchemy): New variable.
2016-10-23 19:41:11 +02:00
Danny Milosavljevic 31288222d4
gnu: Add python-flask-basicauth.
* gnu/packages/python.scm (python-flask-basicauth): New variable.
2016-10-23 19:41:10 +02:00
Danny Milosavljevic 999d964d64
gnu: Add python-flask-restful.
* gnu/packages/python.scm (python-flask-restful): New variable.
2016-10-23 19:31:39 +02:00
Danny Milosavljevic 0990edfecb
gnu: Add python-aniso8601.
* gnu/packages/python.scm (python-aniso8601): New variable.
2016-10-23 19:31:39 +02:00
Rene Saavedra 04ce840a82
gnu: Add bluefish.
* gnu/packages/gnome.scm (bluefish): New variable.
2016-10-23 19:26:30 +02:00
Tobias Geerinckx-Rice 373e765ec3
gnu: openconnect: Update to 7.07.
* gnu/packages/vpn.scm (openconnect): Update to 7.07.
2016-10-23 16:33:04 +02:00
Tobias Geerinckx-Rice bdc74f07c3
gnu: weex: Use ‘modify-phases’.
* gnu/packages/ftp.scm (weex): Use the ‘modify-phases’ syntax.
2016-10-23 16:33:04 +02:00
Ricardo Wurmus 5f5b57681c
gnu: Add guitarix-lv2.
* gnu/packages/audio.scm (guitarix-lv2): New variable.
2016-10-23 15:47:35 +02:00
Ricardo Wurmus 84d53724ba
gnu: Add mod-utilities.
* gnu/packages/music.scm (mod-utilities): New variable.
2016-10-23 15:47:35 +02:00
Ricardo Wurmus 3d4b1bb9a1
gnu: Add jalv-select.
* gnu/packages/music.scm (jalv-select): New variable.
2016-10-23 15:47:35 +02:00
Ricardo Wurmus c2c9e74891
gnu: Add mod-host.
* gnu/packages/music.scm (mod-host): New variable.
2016-10-23 15:47:35 +02:00
Efraim Flashner 875dc49b00
gnu: jasper: Update to 1.900.13.
* gnu/packages/image.scm (jasper): Update to 1.900.13.
[arguments]: Build with -std=c99 support.
2016-10-23 16:32:04 +03:00
ng0 5cb7974109
gnu: Add libpsyc.
* gnu/packages/psyc.scm (libpsyc): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-23 16:32:03 +03:00
ng0 3a14b2bcf6
gnu: Add perl-net-psyc.
* gnu/packages/psyc.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-23 16:32:03 +03:00
Ricardo Wurmus 860eda621b
gnu: vmpk: Remove package.
The vmpk package has been broken for a while and attempts to fix it have
failed.  The package "jack-keyboard" offers similar features.

* gnu/packages/music.scm (vmpk): Remove variable.
2016-10-23 15:06:36 +02:00
Ricardo Wurmus 1a0633e79b
gnu: Add supertuxkart.
* gnu/packages/games.scm (supertuxkart): New variable.
2016-10-23 15:05:19 +02:00
Efraim Flashner 9ba88890f7
gnu: gambit-c: Update to 4.8.5.
* gnu/packages/scheme.scm (gambit-c): Update to 4.8.5.
[source]: Update source tarball name.
2016-10-23 14:37:36 +03:00
Efraim Flashner 27668c79de
gnu: gambit-c: Use 'modify-phases' syntax.
* gnu/packages/scheme.scm (gambit-c)[arguments]: Use 'modify-phases'
syntax.
2016-10-23 14:37:36 +03:00
Efraim Flashner 71dcdaf31f
gnu: gambit-c: Update to 4.7.9.
* gnu/packages/scheme.scm (gambit-c): Update to 4.7.9.
2016-10-23 14:37:36 +03:00
Efraim Flashner fb685df8f8
gnu: bigloo: Use 'modify-phases' syntax.
* gnu/packages/scheme.scm (bigloo)[arguments]: Use 'modify-phases' syntax.
2016-10-23 14:37:36 +03:00
Efraim Flashner 04014de6f5
gnu: hop: Use 'modify-phases' syntax.
* gnu/packages/scheme.scm (hop)[arguments]: Use 'modify-phases' syntax.
2016-10-23 14:37:35 +03:00
Efraim Flashner eccd1d24c9
gnu: hop: Update to 2.5.1.
* gnu/packages/scheme.scm (hop): Update to 2.5.1.
[source]: Remove patch.
* gnu/packages/patches/hop-bigloo-4.0b.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-23 14:37:28 +03:00
Leo Famulari 5ed7f28da5
gnu: mpg321: Update to 0.3.2.
* gnu/packages/mp3.scm (mpg321): Update to 0.3.2.
2016-10-23 05:01:02 -04:00
Leo Famulari d78b652c16
gnu: mpg123: Update to 1.23.8.
* gnu/packages/mp3.scm (mpg123): Update to 1.23.8.
2016-10-23 04:55:26 -04:00
Efraim Flashner 844f4f6e62
gnu: beast: Disable parallel-build.
* gnu/packages/music.scm (beast)[arguments]: Disable parallel builds to
prevent a race condition.
2016-10-23 07:47:03 +03:00
Efraim Flashner d661894159
gnu: infamous-plugins: Remove compiler optimizations.
* gnu/packages/audio.scm (infamous-plugins)[arguments]: Add phase
removing built-in compiler optimizations in the source code.
2016-10-23 07:47:03 +03:00
Efraim Flashner 7ca6830482
gnu: python2-validictory: Add missing input.
* gnu/packages/python.scm (python2-validictory)[native-inputs]: Add
python2-setuptools.
(python-validictory)[properties]: New field.
2016-10-23 07:47:03 +03:00
Efraim Flashner ff1e2b59bf
gnu: ffmpeg: Update to 3.1.5.
* gnu/packages/video.scm (ffmpeg): Update to 3.1.5.
2016-10-23 07:47:03 +03:00
Efraim Flashner 04ed5444fe
gnu: mutt: Update to 1.7.1.
* gnu/packages/mail.scm (mutt): Update to 1.7.1.
2016-10-23 07:47:03 +03:00
ng0 ad6198a5f9
gnu: Add vim-full.
* gnu/packages/vim.scm (vim-full): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-23 07:47:02 +03:00
Efraim Flashner 84a79b8c42
gnu: aria2: Update to 1.28.0.
* gnu/packages/bittorrent.scm (aria2): Update to 1.28.0.
2016-10-23 07:46:49 +03:00
Mark H Weaver 35680748a6
gnu: linux-libre: Update to 4.8.4.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.4.
2016-10-23 00:21:20 -04:00
Mark H Weaver 62cf3ae09b
gnu: linux-libre@4.4: Update to 4.4.27.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.27.
2016-10-23 00:18:42 -04:00
John Darrington 0881b616f4
gnu: guile-ncurses: Update to version 2.0.
* gnu/packages/guile.scm (guile-ncurses): Update version to 2.0.
2016-10-22 17:24:39 +02:00
Alex Sassmannshausen ed53a07145
gnu: perl-test-mockobject: Update to 1.20150527.
* gnu/packages/perl.scm (perl-test-mockobject): Update to 1.20150527.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-22 02:20:15 -04:00
Nicolas Goaziou 3ae48df120
gnu: wireshark: Update to 2.2.1.
* gnu/packages/networking.scm (wireshark): Update to 2.2.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-22 02:20:15 -04:00
Nicolas Goaziou a4c7f40cec
gnu: giac-xcas: Update to 1.2.2-95.
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-95.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-22 02:20:10 -04:00
Mark H Weaver a861665b75
gnu: linux-libre@4.1: Add fix for CVE-2016-5195.
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre-4.1): Add patch.
2016-10-22 00:30:38 -04:00
Mark H Weaver 64de7d1ceb
gnu: make-linux-libre: Add #:patches keyword argument.
* gnu/packages/linux.scm (make-linux-libre): Add 'patches' keyword
argument.
2016-10-22 00:22:31 -04:00
Leo Famulari f08add0c5a
gnu: go-1.7: Skip test that fails due to time zone name change.
* gnu/packages/golang.scm (go-1.7)[arguments]: Skip test "TestLoadFixed" in
'prebuild' phase.
2016-10-21 19:13:01 -04:00
Leo Famulari 4b0bac4b3e
gnu: go-1.4: Skip test that fails due to time zone name change.
* gnu/packages/golang.scm (go-1.4)[arguments]: Skip test "TestLoadFixed" in
'prebuild' phase.
2016-10-21 19:13:01 -04:00
Leo Famulari 04a95a4fd6
gnu: go-1.4: Disable cgo.
* gnu/packages/golang.scm (go-1.4)[arguments]: Set "CGO_ENABLED=0" while
building.
(go-1.7)[arguments]: Keep "CGO_ENABLED=1".
2016-10-21 19:13:01 -04:00
Leo Famulari 57147c5d34
gnu: go-1.7: Update to 1.7.3.
* gnu/packages/golang.scm (go-1.7): Update to 1.7.3.
2016-10-21 19:03:21 -04:00
Leo Famulari bc8aa24b15
gnu: mpv: Update to 0.21.0.
* gnu/packages/video.scm (mpv): Update to 0.21.0.
2016-10-21 15:56:43 -04:00
Christopher Allan Webber 7d2ee59b4a
gnu: slim: Fix line numbers in slim-login.patch.
This was causing build failures.

* gnu/packages/patches/slim-login.patch: Fix line numbers.
2016-10-21 12:51:33 -05:00
Tobias Geerinckx-Rice 666619d088
gnu: lrzip: Update to 0.631.
* gnu/packages/compression.scm (lrzip): Update to 0.631.
2016-10-21 05:14:32 +02:00
Eric Bavier 17d50dfdbb
gnu: slim: Display login message.
* gnu/packages/patches/slim-login.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/display-managers.scm (slim)[source]: Use it.
2016-10-20 16:47:20 -05:00
Eric Bavier 0b71c15c80
gnu: slim: Do not reset session after failed login.
* gnu/packages/patches/slim-reset.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/display-managers.scm (slim)[source]: Use it.
2016-10-20 16:47:19 -05:00
Leo Famulari 5d5cdb7ca4
gnu: linux-libre-4.4: Update to 4.4.26.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.26.
2016-10-20 17:42:49 -04:00
Leo Famulari 88576735bf
gnu: linux-libre: Update to 4.8.3.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.3.
2016-10-20 17:42:49 -04:00
Roel Janssen d6e5de1ed2
gnu: Add emacs-d-mode.
* gnu/packages/emacs.scm (emacs-d-mode): New variable.
2016-10-20 22:26:41 +02:00
ng0 2116bfb367
gnu: network-manager-applet: Update to 1.4.2.
* gnu/packages/gnome.scm (network-manager-applet): Update to 1.4.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-20 22:20:47 +02:00
Ludovic Courtès 29d2f451a6
gnu-maintenance: GNOME updater honors 'upstream-name' package property.
* guix/gnu-maintenance.scm (latest-gnome-release)[upstream-name]: New
variable.  Use it as the first argument to 'latest-ftp-release' and when
constructing #:directory.
* gnu/packages/gnome.scm (gconf)[properties]: New field.
(network-manager)[properties]: New field.
2016-10-20 22:18:59 +02:00
ng0 0d871c3876
gnu: network-manager: Update to 1.4.2.
* gnu/packages/gnome.scm (network-manager): Update to 1.4.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-20 21:57:11 +02:00
Ludovic Courtès 6205e6a0ce
gnu: libgweather: Update to 3.20.3.
* gnu/packages/gnome.scm (libgweather): Update to 3.20.3.
2016-10-20 21:22:46 +02:00
Ludovic Courtès 8b8dfa7f56
gnu: libgweather: Adjust to new timezone name.
* gnu/packages/gnome.scm (libgweather)[arguments]: In 'pre-check' phase,
update "Asia/Rangoon" timezone name.
2016-10-20 21:21:28 +02:00
Ludovic Courtès 7f8393f3eb
gnu: python-mailmanclient: Fix typo.
* gnu/packages/mail.scm (python-mailmanclient)[properties]: Fix typo.
2016-10-20 15:44:48 +02:00
Ludovic Courtès dc0322b511
services: ntpd: Add 'allow-large-adjustment?' knob.
Suggested by Leo Famulari.

* gnu/services/networking.scm (<ntp-configuration>)[allow-large-adjustment?]:
New field.
(ntp-shepherd-service): Honor it.
(ntp-service): Add #:allow-large-adjustment? and honor it.
* doc/guix.texi (Networking Services): Document it.
2016-10-20 15:43:59 +02:00
ng0 6d3dda4ff5
gnu: Add python-mailmanclient.
* gnu/packages/mail.scm (python-mailmanclient): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-20 11:47:12 +03:00
Hartmut Goebel 162e42d8c0
gnu: Add python-validictory and python2-validictory.
* gnu/packages/python.scm (python-validictory, python2-validictory):
  New variables.
2016-10-20 10:27:22 +02:00
Hartmut Goebel b7703c8131
gnu: Add python2-pathlib2.
Adding only the Python 2 variant, since for Python 3 our minimum version
is 3.4 which already includes this package as part of the standard library.

gnu/packages/python.scm (python2-pathlib2): New variable.
2016-10-20 10:09:59 +02:00
Hartmut Goebel 8ab59181a4
gnu: Add python-setproctitle and python2-setproctitle.
* gnu/packages/python.scm (python-setproctitle, python2-setproctitle):
  New variables.
2016-10-20 09:55:19 +02:00
Hartmut Goebel 9518fde1a1
gnu: Add chromaprint.
* gnu/packages/mp3.scm (chromaprint): New variable.
2016-10-20 09:55:19 +02:00
Roel Janssen 4644644ace
gnu: Add r-bioccheck.
* gnu/packages/bioinformatics.scm (r-bioccheck): New variable.
2016-10-20 09:53:02 +02:00
Leo Famulari c645cef7da
gnu: openssh: Fix CVE-2016-8858.
* gnu/packages/patches/openssh-memory-exhaustion.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
2016-10-19 18:02:39 -04:00
Rene Saavedra 3ad7dce1d9
gnu: Add gucharmap.
* gnu/packages/gnome.scm (gucharmap): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-19 23:20:19 +02:00
Carlos Sánchez de La Lama 80c9164fd7
gnu: %static-inputs: Use bash from PATH in bootstrap tar.
gnu/packages/make-bootstrap.scm (%static-inputs): Use bash from PATH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-19 23:20:19 +02:00
Leo Famulari c21b1a1fbb
gnu: borg: Install more documentation.
* gnu/packages/backup.scm (borg)[arguments]: Install more documentation in
'install-doc' phase. Use (srfi srfi-26).
2016-10-19 16:00:26 -04:00
Leo Famulari 7ffa5d4a2d
gnu: python-file: Work around "double encoding" bug in file@5.28.
* gnu/packages/patches/python-file-double-encoding-bug.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-file)[source]: Use it.
(python2-file)[source]: Use the source of FILE directly, without the
patch.
2016-10-19 14:36:51 -04:00
Leo Famulari 00bf74be05
gnu: python-file: Don't create a compressed egg.
* gnu/packages/python.scm (python-file, python2-file)[arguments]: Pass
"--single-version-externally-managed" "--root=/" to #:configure-flags.
2016-10-19 14:36:48 -04:00
Tobias Geerinckx-Rice b332c823b7
gnu: gparted: Update to 0.27.0.
* gnu/packages/disk.scm (gparted): Update to 0.27.0.
2016-10-19 19:34:17 +02:00
Tobias Geerinckx-Rice f5d3773268
gnu: ncftp: Use ‘modify-phases’.
* gnu/packages/ftp.scm (ncftp): Use the ‘modify-phases’ syntax.
2016-10-19 19:34:17 +02:00
Tobias Geerinckx-Rice c17b5986f2
gnu: mcelog: Update to 143.
* gnu/packages/linux.scm (mcelog): Update to 143.
2016-10-19 19:34:17 +02:00
Tobias Geerinckx-Rice 5e270e8e8f
gnu: lftp: Update to 4.7.3.
* gnu/packages/ftp.scm (lftp): Update to 4.7.3.
[source]: Use HTTPS. Remove patch.
[arguments]: Add ‘disable-impure-tests’ phase. Add #:configure-flags with
explicit location of readline headers.
[home-page]: Use HTTPS.
* gnu/packages/patches/lftp-dont-save-unknown-host-fingerprint.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-19 19:34:17 +02:00
Leo Famulari d5ccf71ec6
gnu: awscli: Update to 1.11.5.
* gnu/packages/python.scm (awscli): Update to 1.11.5.
[source]: Use pypi-uri.
[inputs]: Add python-s3transfer.
2016-10-19 13:12:48 -04:00
Leo Famulari 94cffc6386
gnu: Add python-s3transfer.
* gnu/packages/python.scm (python-s3transfer, python2-s3transfer): New
variable.
2016-10-19 13:12:48 -04:00
Leo Famulari e09f952d9f
gnu: python-botocore: Update to 1.4.62.
* gnu/packages/python.scm (python-botocore, python2-botocore): Update to 1.4.62.
2016-10-19 13:12:47 -04:00
Leo Famulari ecd68c53a6
gnu: python-rsa: Update to 3.4.2.
* gnu/packages/python.scm (python-rsa, python2-rsa): Update to 3.4.2.
2016-10-19 13:12:47 -04:00
Leo Famulari def6213f65
gnu: Add libseccomp.
* gnu/packages/linux.scm (libseccomp): New variable.
2016-10-19 13:01:31 -04:00
Marius Bakke 6de9dfce80
gnu: xapian: Update to 1.4.0.
* gnu/packages/search.scm (xapian): Update to 1.4.0.
[source]: Use https URL.
[home-page]: Use https URL.
[arguments]: Remove 'patch-remotetcp-harness' phase. Replace 'check'
phase with a list of custom test targets.
2016-10-19 17:00:51 +01:00
Marius Bakke 16a23d4ad2
gnu: xapian: Use 'modify-phases' syntax.
* gnu/packages/search.scm (xapian)[arguments]: Use 'modify-phases'. Fix
'/bin/sh' substitution to use (which "sh") instead of (which "bash").
2016-10-19 17:00:43 +01:00
Marius Bakke 6cf27c89a5
gnu: notmuch: Enable tests.
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/mail.scm (notmuch)[source]: Use patch.
[arguments]: Add verbose make flags. Add phase 'patch-notmuch-lib.el' to
fix hard-coded /bin/sh. Add 'prepare-test-environment' phase to patch
test shebangs and set environment.
[native-inputs]: Change from 'emacs-minimal' to 'emacs-no-x'. Add dtach,
gnupg, man, perl and which.
2016-10-19 17:00:37 +01:00
Marius Bakke 540d6cc711
gnu: notmuch: Update to 0.23.
* gnu/packages/mail.scm (notmuch): Update to 0.23.
[home-page]: Use https URL.
(python-notmuch)[version]: Inherit from notmuch.
[home-page]: Ditto.
2016-10-19 17:00:24 +01:00
Mark H Weaver b09e0cd154
gnu: chez-scheme: Remove use of 'ghostscript-gs' wrapper.
This is a followup to commit d2478b4cdd.

* gnu/packages/chez.scm (chez-scheme)[native-inputs]: Replace
'ghostscript-gs' with 'ghostscript'.
2016-10-19 11:26:51 -04:00
Mark H Weaver d2478b4cdd
Merge branch 'master' into core-updates 2016-10-19 10:54:36 -04:00
ng0 152ffe7cb6
gnu: Add opensmtpd-extras.
* gnu/packages/mail.scm (opensmtpd-extras): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-19 17:37:16 +03:00
ng0 8b53366c63
gnu: Add opensmtpd.
* gnu/packages/mail.scm (opensmtpd): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-19 17:32:49 +03:00
ng0 71f048c624
gnu: Add libasr.
* gnu/packages/dns.scm (libasr): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-19 17:28:06 +03:00
Efraim Flashner c11933c920
gnu: zile: Use 'modify-phases' syntax.
* gnu/packages/zile.scm (zile)[arguments]: Use 'modify-phases' syntax.
2016-10-19 17:10:17 +03:00
Efraim Flashner fa216a4d01
gnu: zile: Update to 2.4.13.
* gnu/packages/zile.scm (zile): Update to 2.4.13.
[home-page]: Use https.
2016-10-19 17:10:17 +03:00
Ludovic Courtès 4534d85e70
gnu: Add Ao.
* gnu/packages/engineering.scm (ao): New variable.
2016-10-19 15:54:10 +02:00
Ludovic Courtès a966281f2d
gnu: glfw: Propagate the relevant inputs.
* gnu/packages/gl.scm (glfw)[inputs]: Rename to...
[propagated-inputs]: ... this.  Add LIBXXF86VM.
2016-10-19 15:54:10 +02:00
Ludovic Courtès 7fee5b5397
container: Allow 'container-excursion' to the same namespaces.
Before that, 'container-excursion' would call 'setns' even when the
target namespace is the one the caller is already in, which would fail.

* gnu/build/linux-container.scm (container-excursion): Introduce
'source' and 'target'.  Compare the result of 'readlink' on these
instead of comparing file descriptors to decide whether to call
'setns'.
* tests/containers.scm ("container-excursion, same namespace"): New test.
2016-10-19 15:54:10 +02:00
Roel Janssen 99df12cd19
gnu: Add r-biocstyle.
* gnu/packages/bioinformatics.scm (r-biocstyle): New variable.
2016-10-19 15:22:06 +02:00
Roel Janssen 207ce8fbe5
gnu: Add r-biocviews.
* gnu/packages/bioinformatics.scm (r-biocviews): New variable.
2016-10-19 15:09:55 +02:00
Benz Schenk b747718e23
gnu: Add iperf.
* gnu/packages/networking.scm (iperf): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-19 13:19:07 +01:00
Hartmut Goebel b5a5fb1927
gnu: python-dateutil, python-dateutil-2: Update to new home-page.
* gnu/packages/python.scm (python-dateutil, python2-dateutil,
  python-dateutil-2, python2-dateutil-2)[home-page]: Update URL.
2016-10-19 11:52:54 +02:00
Roel Janssen c79ad57a8d
gnu: Add r-optparse.
* gnu/packages/bioinformatics.scm (r-optparse): New variable.
2016-10-19 10:48:56 +02:00
Roel Janssen 2acaaee550
gnu: Add r-getopt.
* gnu/packages/bioinformatics.scm (r-getopt): New variable.
2016-10-19 09:55:45 +02:00
Federico Beffa 7d95c0006a
gnu: Add GHC 8.0.1.
* gnu/packages/haskell.scm (ghc-8): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 1bd00f1737
gnu: Add ghc-hashtables.
* gnu/packages/haskell.scm (ghc-hashtables): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa db61a00971
gnu: Add ghc-easyplot.
* gnu/packages/haskell.scm (ghc-easyplot): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 4225c7116d
gnu: Add ghc-hmatrix-gsl-stats.
* gnu/packages/haskell.scm (ghc-hmatrix-gsl-stats): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 271a5365aa
gnu: Add ghc-hmatrix-special.
* gnu/packages/haskell.scm (ghc-hmatrix-special): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 932104abce
gnu: Add ghc-hmatrix-gsl.
* gnu/packages/haskell.scm (ghc-hmatrix-gsl): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 95595618b1
gnu: Add ghc-hmatrix.
* gnu/packages/haskell.scm (ghc-hmatrix): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 725dddd7fb
gnu: Add ghc-storable-complex.
* gnu/packages/haskell.scm (ghc-storable-complex): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa fb6d2d75f3
gnu: Add chez-fmt.
* gnu/packages/chez.scm (chez-fmt): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 87d6c9ef8a
gnu: Add chez-irregex.
* gnu/packages/chez.scm (chez-irregex): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 387541907f
gnu: Add chez-matchable
* gnu/packages/chez.scm (chez-matchable): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 74f9c19092
gnu: Add chez-sockets
* gnu/packages/chez.scm (chez-sockets): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 4dfe4eee55
gnu: Add chez-web
* gnu/packages/chez.scm (chez-web): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa c344b85dd0
gnu: Add chez-srfi.
* gnu/packages/chez.scm (chez-srfi): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 13bbc0cc94
gnu: chez-scheme: Move to new module.
* gnu/packages/scheme.scm (chez-scheme, nanopass, stex): Move variables ...
* gnu/packages/chez.scm (chez-scheme, nanopass, stex): ... here. New module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
2016-10-19 08:44:11 +02:00
Federico Beffa f7616df4af
gnu: chez-scheme: Fix i686 build.
* gnu/packages/scheme.scm (chez-scheme): Add 'configure-flags', generalize
  'configure' phase and simplify 'install-doc' phase.
2016-10-19 08:44:11 +02:00
Federico Beffa 4b86dde0d6
gnu: chez-scheme: Add search-path.
* gnu/packages/scheme.scm (chez-scheme)[native-search-paths]: New field.
2016-10-19 08:44:11 +02:00
Christopher Allan Webber f7017a719d
build: Remove reference to nonexistant patch file.
* gnu/local.mk: Remove reference to kobodeluxe-spelling.patch,
  which was removed during a revision to the submitted kobodeluxe package.
2016-10-18 21:31:52 -05:00
Christopher Allan Webber 3d1fe340db
gnu: kobodeluxe: Indicate origin of kobodeluxe-paths.patch.
* gnu/packages/patches/kobodeluxe-paths.patch: Update header, pointing
  to Debian tarball for provenance.
2016-10-18 20:35:01 -05:00
Leo Famulari ca121ae8d7
gnu: mariadb: Update to 10.1.18.
* gnu/packages/databases.scm (mariadb): Update to 10.1.18.
2016-10-18 21:32:11 -04:00
Leo Famulari 0cf3a7259b
gnu: mysql: Update to 5.7.16.
* gnu/packages/databases.scm (mysql): Update to 5.7.16.
2016-10-18 21:32:03 -04:00
Stephen Webber a56145e1fa
gnu: Add kobodeluxe.
* gnu/packages/games.scm (kobodeluxe): New variable.
* gnu/packages/patches/kobodeluxe-paths.patch: New file.
* gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch: New file.
* gnu/packages/patches/kobodeluxe-const-charp-conversion.patch: New file.
* gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch: New file.
* gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch: New file.
* gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-10-18 20:23:03 -05:00
ng0 91988aee12
gnu: torsocks: Update to 2.2.0.
* gnu/packages/patches/torsocks-dns-test.patch: Delete file.
* gnu/local.mk: Remove it.
* gnu/packages/tor.scm (torsocks): Update to 2.2.0.
[source]: Remove patch. Change method from 'git-fetch' to 'url-fetch'.
Remove 'file-name'.
[arguments]: Remove 'bootstrap' phase.
[native-inputs]: Remove autoconf, automake and libtool. Also remove
obsoleted perl-test-harness.
[home-page]: Use https URL.
(define-module): Don't import perl.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-18 23:45:06 +01:00
Andreas Enge 15ca49b220
gnu: hdf4: Really fix non-x86 architectures.
This is a follow-up to commit 60da9fb110.

* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/maths.scm (hdf4)[source]: Add patch.
2016-10-18 21:15:43 +02:00
Efraim Flashner 1dc30f9232
gnu: enlightenment: Update to 0.21.3.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.3.
2016-10-18 08:57:54 +03:00
Mark H Weaver c9a71c6fda
gnu: dbus: Fix bad 'origin' form in dbus-1.10.12.
This is a followup to commit dcaf70897a.

* gnu/packages/glib.scm (dbus-1.10.12)[source]: Remove unneeded 'method'
field, so that 'inherit' comes first.
2016-10-17 21:04:57 -04:00
Efraim Flashner 00bfd498f9
gnu: tor: Update to 0.2.8.9.
* gnu/packages/tor.scm (tor): Update to 0.2.8.9.
2016-10-18 00:25:30 +03:00
Efraim Flashner a31ac11385
gnu: vapoursynth: Update to 34.
* gnu/packages/video.scm (vapoursynth): Update to 34.
2016-10-18 00:08:09 +03:00
Efraim Flashner 8ee04627d8
gnu: zimg: Update to 2.3.
* gnu/packages/image.scm (zimg): Update to 2.3.
2016-10-18 00:07:20 +03:00
Efraim Flashner b333d00c35
gnu: jasper: Update to 1.900.5.
* gnu/packages/image.scm (jasper): Update to 1.900.5.
[source]: Remove patches.
[native-inputs]: Remove unzip.
* gnu/packages/patches/jasper-CVE-2007-2721.patch,
gnu/packages/patches/jasper-CVE-2008-3520.patch,
gnu/packages/patches/jasper-CVE-2008-3522.patch,
gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch,
gnu/packages/patches/jasper-CVE-2014-8137.patch,
gnu/packages/patches/jasper-CVE-2014-8138.patch,
gnu/packages/patches/jasper-CVE-2014-8157.patch,
gnu/packages/patches/jasper-CVE-2014-8158.patch,
gnu/packages/patches/jasper-CVE-2014-9029.patch,
gnu/packages/patches/jasper-CVE-2016-1577.patch,
gnu/packages/patches/jasper-CVE-2016-1867.patch,
gnu/packages/patches/jasper-CVE-2016-2089.patch,
gnu/packages/patches/jasper-CVE-2016-2116.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-10-17 23:51:38 +03:00
Mark H Weaver dcaf70897a
Merge branch 'master' into core-updates 2016-10-17 16:47:12 -04:00
Leo Famulari 6ace9f80f1
gnu: diffoscope: Update to 61.
* gnu/packages/package-management.scm (diffoscope): Update to 61.
2016-10-17 16:39:46 -04:00
Ludovic Courtès bf62b8ff79
gnu: guile-lib: Update to 0.2.3.
* gnu/packages/guile.scm (guile-lib): Update to 0.2.3.
[arguments]: Adjust 'patch-module-dir' to change both 'moddir' and
'godir'; use '@GUILE_EFFECTIVE_VERSION@' instead of a hard-coded
"2.0".  Add 'check' phase.
[native-inputs]: New field.
2016-10-17 22:06:44 +02:00
Ludovic Courtès 9d356c9c92
gnu: guile-lib: Use 'modify-phases'.
* gnu/packages/guile.scm (guile-lib)[arguments]: Use 'modify-phases'.
2016-10-17 22:06:44 +02:00
Ludovic Courtès c21af659b4
gnu: recutils: Adjust to Bash 4.4.
* gnu/packages/databases.scm (recutils)[arguments]: Add
'set-bash4.4-header-location' phase.
2016-10-17 22:06:44 +02:00
John Darrington 040b6299d5
gnu: openssh: Enable kerberos features.
* gnu/packages/ssh.scm (openssh) [arguments]: Add flag --with-kerberos5.
[inputs]: Add mit-krb5.
2016-10-17 21:52:53 +02:00
Mark H Weaver cd829fe306
gnu: linux-libre: Update to 4.8.2.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.2.
2016-10-17 15:23:46 -04:00
Mark H Weaver 43f1d02ddc
gnu: linux-libre@4.4: Update to 4.4.25.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.25.
2016-10-17 15:22:33 -04:00
Rene Saavedra 0bd697591b
gnu: Add xpad.
* gnu/packages/gnome.scm (xpad): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-10-17 15:09:31 -04:00
Leo Famulari 759aadd46f
gnu: python-requests-toolbelt: Fix build failure by adding missing dependencies.
* gnu/packages/python.scm (python-requests-toolbelt)[native-inputs]: Add
python-betamax, python-mock and python-pytest.
2016-10-17 13:54:51 -04:00
Leo Famulari 66d3f50a76
gnu: Add python-betamax.
* gnu/packages/python.scm (python-betamax, python2-betamax): New variables.
2016-10-17 13:54:51 -04:00
Leo Famulari a9871b7b52
gnu: python-vobject: Disable the test suite.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the python-vobject build to fail.

* gnu/packages/python.scm (python-vobject, python2-vobject)[arguments]: Disable
the tests.
2016-10-17 13:54:51 -04:00
Leo Famulari 8757f05046
gnu: python-wsgi-intercept: Fix build failure with Python 3.5.
* gnu/packages/python.scm (python-wsgi-intercept)[native-inputs]:
Add python-urllib3.
2016-10-17 13:54:47 -04:00
Ricardo Wurmus 5093729704
gnu: Add rcas-web.
* gnu/packages/bioinformatics.scm (rcas-web): New variable.
2016-10-17 18:09:20 +02:00
Ricardo Wurmus 89984be46e
gnu: Add r-rcas.
* gnu/packages/bioinformatics.scm (r-rcas): New variable.
2016-10-17 18:09:16 +02:00
Ricardo Wurmus f90b2dbdb7
gnu: irrlicht: Update to 1.8.4.
* gnu/packages/games.scm (irrlicht): Update to 1.8.4.
[arguments]: Delete phase "apply-patch/mesa-10-fix".
[native-inputs]: Remove "patch/mesa-10-fix".
* gnu/packages/patches/irrlicht-mesa-10.patch: Delete file.
* gnu/local.mk (dist_path_DATA): Remove irrlicht patch.
2016-10-17 17:11:51 +02:00
Ricardo Wurmus b8a35ccea6
gnu: extremetuxracer: Update to 0.7.3.
* gnu/packages/games.scm (extremetuxracer): Update to 0.7.3.
[inputs]: Remove freetype, mesa, libice, libpng, sdl, sdl-mixer,
sdl-image, libsm, libunwind, libx11, libext, libxi, libxmu, libxt, tcl,
zlib; add sfml.
[arguments]: Remove field.
2016-10-17 17:11:43 +02:00
Ricardo Wurmus a6e25a50f9
gnu: sfml: Install pkgconfig files.
* gnu/packages/game-development.scm (sfml)[arguments]: Add configure
flag to install pkgconfig files.
2016-10-17 17:11:37 +02:00
Adonay Felipe Nogueira 8a666bc5cb
gnu: artanis: Remove implied $(DESTDIR) usage.
* gnu/packages/patches/artanis-fix-Makefile.in.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/guile.scm (artanis)[source]: Use patch.
[arguments]: Remove DESTDIR from #:make-flags.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-17 15:20:11 +01:00
宋文武 3969ca548c
gnu: wrap-python3: Use a bash wrapper for 'python3-config'.
See <http://lists.gnu.org/archive/html/guix-devel/2016-07/msg00008.html>
for details.

* gnu/packages/python.scm (wrap-python3)[arguments]: Use a bash wrapper
instead of a symlink for python3-config.
2016-10-17 18:53:50 +08:00
Al McElrath dd04f56a2b
gnu: node: Update to 6.8.0.
Remove <https://debbugs.gnu.org/23744> and
<https://debbugs.gnu.org/23723> workaround.

* gnu/packages/node.scm (node): Update to 6.8.0.
  (node)[arguments]: Disabled more tests. Remove custom 'patch-shebangs'
  phase. Manually patch npm script shebang in new 'patch-npm-shebang'
  phase.
* gnu/packages/patches/node-9077.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-17 11:55:49 +02:00
Ben Woodcroft a8de0d1ec4
gnu: ruby-json-pure: Fix tests.
* gnu/packages/ruby.scm (ruby-json-pure)[arguments]: Remove unneeded
reference to 'json-java.gemspec' in 'Gemfile'.
2016-10-17 19:17:53 +10:00
Ben Woodcroft b8004a7b79
gnu: bundler: Update to 1.13.5.
* gnu/packages/ruby.scm (bundler): Update to 1.13.5.
2016-10-17 19:17:52 +10:00
Hartmut Goebel cb0866c325
gnu: Add geierlein.
* gnu/packages/finance.scm (geierlein): New variable.
2016-10-17 10:39:21 +02:00
Tobias Geerinckx-Rice 4fb5f83099
gnu: Add sslh.
* gnu/packages/networking.scm (sslh): New variable.
2016-10-17 02:02:15 +02:00
Tobias Geerinckx-Rice 2f96872727
gnu: httping: Update to 2.5.
* gnu/packages/networking.scm (httping): Update to 2.5.
2016-10-17 02:02:15 +02:00
Julien Lepiller f3e222165e
gnu: Add fbida.
* gnu/packages/pdf.scm (fbida): New variable.
2016-10-16 14:00:18 -04:00
Leo Famulari 964fc66936
gnu: python-requests-mock: Fix build failure with Python 3.5.
* gnu/packages/openstack.scm (python-requests-mock,
python2-requests-mock)[native-inputs]: Add python-docutils.
2016-10-16 11:43:30 -04:00
Leo Famulari 792e607903
gnu: xonsh: Disable the test suite.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the xonsh build to fail.

* gnu/packages/shells.scm (xonsh)[arguments]: Disable the tests.
2016-10-16 11:10:19 -04:00
Andreas Enge 60da9fb110
gnu: hdf4: Fix non-x86 architectures.
* gnu/packages/patches/hdf4-architectures.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/maths.scm (hdf4)[source]: Add patch.
2016-10-16 17:00:56 +02:00
Leo Famulari f349d36e48
gnu: certbot, python-acme: Update to 0.9.3.
These packages should be updated together.

* gnu/packages/tls.scm (certbot): Update to 0.9.3.
[source]: Use pypi-uri.
(python-acme, python2-acme): Update to 0.9.3.
[source]: Use pypi-uri.
2016-10-16 09:26:36 -04:00
Leo Famulari 6c514128ec
gnu: python-dnspython: Update to 0.15.0.
* gnu/packages/python.scm (python-dnspython, python2-dnspython): Update
to 0.15.0.
2016-10-16 09:26:35 -04:00
Leo Famulari 0580e383c2
gnu: python-werkzeug: Update to 0.11.11.
* gnu/packages/python.scm (python-werkzeug, python2-werkzeug):
Update to 0.11.11.
2016-10-16 09:26:35 -04:00
Leo Famulari eb68d2685a
gnu: python-pyopenssl: Update to 16.1.0.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update
to 16.1.0
[source]: Use pypi-uri.
2016-10-16 09:26:35 -04:00
Leo Famulari caa0edb36c
gnu: python-pyasn1: Update to 0.1.9.
* gnu/packages/python.scm (python-pyasn1, python2-pyasn1): Update to 0.1.9.
[source]: Use pypi-uri.
2016-10-16 09:26:29 -04:00
Ricardo Wurmus b7afd01893
gnu: Add python-whoosh.
* gnu/packages/python.scm (python-whoosh, python2-whoosh): New variables.
2016-10-16 12:55:43 +02:00
Theodoros Foradis 569f601649
gnu: Add arm-none-eabi-toolchain variants.
* gnu/packages/embedded.scm (arm-none-eabi-toolchain): New procedure.
(arm-none-eabi-toolchain-4.9, arm-none-eabi-nano-toolchain-4.9,
arm-none-eabi-toolchain-6, arm-none-eabi-nano-toolchain-6): New
variables.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2016-10-16 11:53:11 +02:00
Theodoros Foradis dbc3c34ea0
gnu: Add arm-none-eabi-gcc-6.
* gnu/packages/embedded.scm (gcc-arm-none-eabi-6): New variable.
* gnu/packages/patches/gcc-6-arm-none-eabi-multilib.patch: New file.
* gnu/packages/patches/gcc-6-cross-environment-variables.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patches.
2016-10-16 11:53:07 +02:00
Leo Famulari a39cc01632
gnu: python-ndg-httpsclient: Disable tests.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the python-ndg-httpsclient build to fail.

* gnu/packages/python.scm (python-ndg-httpsclient)[arguments]: Disable tests.
2016-10-15 22:43:41 -04:00
Leo Famulari ca0eee9df5
gnu: python-execnet: Disable tests.
The tests were silently skipped with Python 3.4. With Python 3.5, this
caused the python-execnet build to fail.

* gnu/packages/python.scm (python-execnet, python2-execnet)[arguments]: Disable
tests.
2016-10-15 22:20:38 -04:00
Leo Famulari 31c580068b
gnu: youtube-dl: Disable the tests.
The tests were silently skipped with Python 3.4. With Python 3.5, this
caused the youtube-dl build to fail.

* gnu/packages/video.scm (youtube-dl)[arguments]: Disable tests.
2016-10-15 21:17:17 -04:00
Leo Famulari 57e57d433a
gnu: youtube-dl: Update to 2016-10-16.
* gnu/packages/video.scm (youtube-dl): Update to 2016-10-16.
2016-10-15 21:17:03 -04:00
Leo Famulari f4a4b854e0
gnu: youtube-dl: Update to 2016-10-16.
* gnu/packages/video.scm (youtube-dl): Update to 2016-10-16.
2016-10-15 21:11:42 -04:00
Leo Famulari f76af41a76
gnu: radicale: Run the test suite with py.test.
* gnu/packages/dav.scm (radicale)[native-inputs]: Add python-pytest.
[arguments]: Replace the 'check' phase and run the tests with python-pytest.
2016-10-15 20:26:05 -04:00
Leo Famulari 2f87a77ff7
gnu: python2-file: Build with setuptools.
* gnu/packages/python.scm (python-file)[properties]: New field.
(python2-file): Use strip-python2-variant.
[native-inputs]: Add python2-setuptools.
2016-10-15 20:14:55 -04:00
Andy Patterson fcb9b9340f
gnu: dbus-1.10.12: Fix search paths.
Add the patches from dbus's source field back into its replacement. This ensures
that the grafted dbus package can find its services on GuixSD.

This is a follow-up to commit 34f9582aad.

* gnu/packages/glib.scm (dbus-1.10.12)[source]: Inherit from dbus.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-15 18:13:58 -04:00
Efraim Flashner 5f01e1bbc6
gnu: assimp: Update to 3.3.1.
* gnu/packages/graphics.scm (assimp): Update to 3.3.1.
[native-inputs]: Remove unzip.
2016-10-15 23:22:47 +03:00
Efraim Flashner 608bf1d38b
gnu: jsoncpp: Update to 1.7.7.
* gnu/packages/serialization.scm (jsoncpp): Update to 1.7.7.
2016-10-15 23:22:46 +03:00
Efraim Flashner 43593f5bc4
gnu: cereal: Update to 1.2.1.
* gnu/packages/serialization.scm (cereal): Update to 1.2.1.
2016-10-15 23:22:46 +03:00
Efraim Flashner d0cddec230
gnu: picocom: Update to 2.2.
* gnu/packages/terminals.scm (picocom): Update to 2.2.
2016-10-15 23:22:46 +03:00
Efraim Flashner 66bb5db7ab
gnu: termite: Use 'modify-phases' syntax.
* gnu/packages/terminals.scm (termite)[arguments]: Use 'modify-phases'
syntax.
2016-10-15 23:22:45 +03:00
Efraim Flashner ebe3515f78
gnu: termite: Update to 12.
* gnu/packages/terminals.scm (termite): Update to 12.
2016-10-15 23:22:45 +03:00
Efraim Flashner 9bf160a3d0
gnu: libgit2: Update to 0.24.2.
* gnu/packages/version-control.scm (libgit2): Update to 0.24.2.
[home-page]: Use https.
2016-10-15 23:22:45 +03:00
Efraim Flashner c2a3b23fba
gnu: abcde: Update to 2.7.2.
* gnu/packages/cdrom.scm (abcde): Update to 2.7.2.
[arguments]: Correct sysconfdir location.
2016-10-15 23:22:44 +03:00
Efraim Flashner 2e36f7e6b2
gnu: qt: Update to 5.6.2.
* gnu/packages/qt.scm (qt): Update to 5.6.2.
[home-page]: Update to new home-page.
2016-10-15 23:22:33 +03:00
Leo Famulari e1376e25a7
gnu: gd: Fix CVE-2016-8670.
* gnu/packages/patches/gd-CVE-2016-8670.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
2016-10-15 15:31:49 -04:00
John Darrington 6f30a55c96
gnu: services sddm Fix typo.
* gnu/services/sddm.scm: sddm-confiugration? --> sddm-configuration?
2016-10-15 16:35:04 +02:00
Ricardo Wurmus 7bc2f3ac14
gnu: guitarix: Update to 0.35.2.
* gnu/packages/audio.scm (guitarix): Update to 0.35.2.
2016-10-15 09:22:30 +02:00
宋文武 4c8c2b0f54
gnu: gtk+: Move desktop files into "bin" output.
* gnu/packages/gtk.scm (gtk+)[arguments]: Add 'move-desktop-files' phase.
2016-10-15 09:39:14 +08:00
Ricardo Wurmus b74d79dc5a
gnu: gx-switchless-wah-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-switchless-wah-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:35 +02:00
Ricardo Wurmus 759318fd77
gnu: gx-slow-gear-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-slow-gear-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:35 +02:00
Ricardo Wurmus 349753743f
gnu: gx-vintage-fuzz-master-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-vintage-fuzz-master-lv2)[arguments]: Add
phase "escape-shell-commands".
2016-10-14 23:45:35 +02:00
Ricardo Wurmus c6e45a93d4
gnu: gx-super-fuzz-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-super-fuzz-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:35 +02:00
Ricardo Wurmus 2dedc16b04
gnu: gx-voodoo-fuzz-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-voodoo-fuzz-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:34 +02:00
Ricardo Wurmus b9ac372c55
gnu: gx-hyperion-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-hyperion-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:34 +02:00
Ricardo Wurmus 9d54b12a49
gnu: gx-saturator-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-saturator-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:34 +02:00
Leo Famulari 470613f962
gnu: python-cryptography: Ignore spurious test failure.
* gnu/packages/python.scm (python-cryptography,
python2-cryptography)[arguments]: Add 'disable-failing-test' phase.
2016-10-14 16:58:09 -04:00
Alex Vong b280e67ca6
gnu: libraw: Update to 0.17.2 [fixes CVE-2015-{8366,8367}].
* gnu/packages/photo.scm (libraw): Update to 0.17.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-14 13:24:23 -04:00
Efraim Flashner 4a2798e067
gnu: freeimage: Use 'modify-phases' syntax.
* gnu/packages/image.scm (freeimage)[arguments]: Use 'modify-phases'
syntax.
2016-10-14 13:43:12 +03:00
Efraim Flashner 76e8566c1b
gnu: freeimage: Fix CVE-2016-5684.
* gnu/packages/image.scm (freeimage)[source]: Add patch.
* gnu/packages/patches/freeimage-CVE-2016-5684.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-10-14 13:42:43 +03:00
Hartmut Goebel 0350a8bb1e
gnu: mail: Add notifymuch.
* gnu/packages/mail.scm (notifymuch): New variable.
2016-10-14 11:27:14 +02:00
Leo Famulari 90dcd49663
gnu: dbus: Replace with 1.10.12 [security fix].
Fixes <https://bugs.freedesktop.org/show_bug.cgi?id=98157>
"format string vulnerability processing ActivationFailure messages"

* gnu/packages/glib.scm (dbus)[replacement]: New field.
(dbus-1.10.12): New variable.
2016-10-13 22:50:10 -04:00
Leo Famulari 34f9582aad
gnu: dbus: Replace with 1.10.12 [security fix].
Fixes <https://bugs.freedesktop.org/show_bug.cgi?id=98157>
"format string vulnerability processing ActivationFailure messages"

* gnu/packages/glib.scm (dbus)[replacement]: New field.
(dbus-1.10.12): New variable.
2016-10-13 22:48:02 -04:00
Ludovic Courtès c62a31ca80
gnu: guile: Graft 2.0.13.
* gnu/packages/guile.scm (guile-2.0.13): New variable.
(guile-2.0)[replacement]: New field.
(guile-2.0/fixed)[properties, replacement]: New fields.
(guile-next)[replacement]: New field.
* gnu/packages/make-bootstrap.scm (%guile-static)[replacement]: New
field.
2016-10-13 23:08:17 +02:00
Ricardo Wurmus a9f55bf218
gnu: Add jack-keyboard.
* gnu/packages/music.scm (jack-keyboard): New variable.
2016-10-13 22:50:46 +02:00
Ricardo Wurmus d75e8f5a92
gnu: Add gx-switchless-wah-lv2.
* gnu/packages/music.scm (gx-switchless-wah-lv2): New variable.
2016-10-13 22:50:46 +02:00
Ricardo Wurmus 631f817586
gnu: Add gx-slow-gear-lv2.
* gnu/packages/music.scm (gx-slow-gear-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 40bffdfa2a
gnu: Add gx-vintage-fuzz-master-lv2.
* gnu/packages/music.scm (gx-vintage-fuzz-master-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 29f632220c
gnu: Add gx-super-fuzz-lv2.
* gnu/packages/music.scm (gx-super-fuzz-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 32536f0058
gnu: Add gx-voodoo-fuzz-lv2.
* gnu/packages/music.scm (gx-voodoo-fuzz-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 894122382e
gnu: Add gx-hyperion-lv2.
* gnu/packages/music.scm (gx-hyperion-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 664f677fdc
gnu: Add gx-saturator-lv2.
* gnu/packages/music.scm (gx-saturator-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 3eb1a9643b
gnu: Add gx-suppa-tone-bender-lv2.
* gnu/packages/music.scm (gx-suppa-tone-bender-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus 4d4bfdc29b
gnu: Add gx-push-pull-lv2.
* gnu/packages/music.scm (gx-push-pull-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus 4d95cd306b
gnu: Add gx-tone-mender-lv2.
* gnu/packages/music.scm (gx-tone-mender-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus cdc7a021b5
gnu: Add gx-overdriver-lv2.
* gnu/packages/music.scm (gx-overdriver-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus 85ae347ee7
gnu: Add gx-vbass-preamp-lv2.
* gnu/packages/music.scm (gx-vbass-preamp-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus 49604680cd
gnu: Add gx-guvnor-lv2.
* gnu/packages/music.scm (gx-guvnor-lv2): New variable.
2016-10-13 22:50:43 +02:00
Arun Isaac 71d3ee1cbb
gnu: Add emacs-nginx-mode.
* gnu/packages/emacs.scm (emacs-nginx-mode): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
2016-10-13 22:32:16 +03:00
ng0 2edbfbf588
gnu: Add emacs-evil.
* gnu/packages/emacs.scm (emacs-evil): New variable.

Co-authored-by: Alex Kost <alezost@gmail.com>
2016-10-13 22:32:04 +03:00
ng0 ce74e52011
gnu: Add emacs-goto-chg.
* gnu/packages/emacs.scm (emacs-goto-chg): New variable.

Co-authored-by: Alex Kost <alezost@gmail.com>
2016-10-13 22:31:51 +03:00
Hartmut Goebel 7a8894e803
gnu: python-pathlib: Update description.
* gnu/packages/python.scm (python-pathlib, python2-pathlib): Update
  description.
2016-10-13 17:22:42 +02:00
Hartmut Goebel 190ba6c2af
gnu: python-keyring: Update home-page url.
* gnu/packages/python.scm (python-keyring, python2-keyring): Update home-page
  url.
2016-10-13 17:22:41 +02:00
Hartmut Goebel 6a8f26a441
gnu: python-pylockfile: Update home-page url.
* gnu/packages/python.scm (python-pylockfile, python2-pylockfile): Update
  home-page url.
2016-10-13 17:22:41 +02:00
Hartmut Goebel b02f7a21d1
gnu: python-zope-testing: Strip byte-code and backup-files from source.
* gnu/package/python.scm (python-zope-testing, python2-zope-testing)[source]:
  Add snippet to strip byte-code and backup-files.
2016-10-13 17:22:40 +02:00
Hartmut Goebel de585a7e64
gnu: python-pytest-xdist: Remove python byte-code files from source.
* gnu/packages/python.scm (python-pytest-xdist,
  python2-pytest-xdist)[source]: Add snippet.
2016-10-13 17:22:40 +02:00
Hartmut Goebel 32d045683d
gnu: python2-pytest-runner, python2-msgpack: Remove duplicate definitions.
* gnu/packages/python.scm (python2-pytest-runner): Was defined twice, remove
  duplicate definition. (python2-msgpack): Was defined twice, but differently,
  remove the obviously wrong second definition.
2016-10-13 17:22:39 +02:00
Ludovic Courtès 3abd66aa0c
gnu: make-bootstrap: Remove duplicate definition of 'bash-static'.
* gnu/packages/make-bootstrap.scm (%bash-static): Remove.
(%static-inputs): Use STATIC-BASH instead of %BASH-STATIC.
2016-10-13 16:26:53 +02:00
Ludovic Courtès c86447f486
gnu: bash-minimal: Remove "include" output.
* gnu/packages/bash.scm (bash-minimal)[outputs]: New field.
(static-bash)[outputs]: Remove.
2016-10-13 16:26:49 +02:00
Leo Famulari e3d9da3c0c
gnu: gnupg: Remove superfluous patch.
This patch was integrated into GnuPG 2.1.14.

* gnu/packages/patches/gnupg-fix-expired-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gnupg.scm (gnupg)[source]: Remove patch.
2016-10-13 10:05:23 -04:00
Mark H Weaver c8ed7309f4
git: webkitgtk: Update to 2.14.1.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.1.
2016-10-13 06:36:05 -04:00
Mark H Weaver b23ece1d2c
gnu: linux-libre@4.1: Update to 4.1.34.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.34.
2016-10-13 06:29:14 -04:00
Mark H Weaver 34708a221a
gnu: ghostscript: Eliminate graft.
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: Remove field.
[source]: Add new patches from 'ghostscript/fixed'.
(ghostscript/fixed): Remove variable.
(ghostscript/x): Inherit from 'ghostscript'.
2016-10-13 05:54:22 -04:00
Mark H Weaver 061d7f3bd2
Merge branch 'master' into core-updates 2016-10-13 05:53:07 -04:00
Mark H Weaver 1cc213850a
gnu: graphicsmagick: Update to 1.3.25-1-56c8cae [security fixes].
Fixes CVE-2016-7800, CVE-2016-7996, CVE-2016-7997, and several other flaws.

* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.25-1-56c8cae.
[source]: Change method from 'url-fetch' to 'hg-fetch'.  Add 'file-name'.
2016-10-13 05:49:33 -04:00
Andy Wingo f2ec23d18e
gnu: Add CUPS service.
* gnu/services/cups.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/services/cups.scm.
* doc/guix.texi (Printing Services): New section.
2016-10-13 11:37:25 +02:00
Mark H Weaver e98e9f4e85
gnu: imagemagick: Disable tests.
* gnu/packages/imagemagick.scm (imagemagick)[arguments]: Disable tests.
2016-10-13 05:28:25 -04:00
Mark H Weaver 59929e9849
gnu: imagemagick: Update to 6.9.6-2 [Fixes CVE-2016-{7799,7906}].
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-2.
2016-10-13 04:28:52 -04:00
Mark H Weaver ab8536e4a8
gnu: ghostscript-with-x: Avoid inheriting replacement field.
This is a followup to commit 1de17a648f.

* gnu/packages/ghostscript.scm (ghostscript/fixed)[replacement]:
Override inherited value.
2016-10-13 03:38:03 -04:00
Mark H Weaver 1de17a648f
gnu: ghostscript: Fix CVE-2013-5653 and CVE-2016-{7976,7978,7979,8602}.
* gnu/packages/patches/ghostscript-CVE-2013-5653.patch,
gnu/packages/patches/ghostscript-CVE-2016-7976.patch,
gnu/packages/patches/ghostscript-CVE-2016-7978.patch,
gnu/packages/patches/ghostscript-CVE-2016-7979.patch,
gnu/packages/patches/ghostscript-CVE-2016-8602.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field.
(ghostscript/fixed): New variable.
(ghostscript/x): Inherit 'ghostscript/fixed'.
2016-10-13 03:30:21 -04:00
Thomas Danckaert becbbefc9b
gnu: Add hdf4
* gnu/packages/maths.scm (hdf4, hdf4-alt): New variables.
* gnu/packages/patches/hdf4-reproducibility.patch: New file.
* gnu/packages/patches/hdf4-shared-fortran.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Co-Authored-By: Jeremy Robst <jpro@bas.ac.uk>

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-12 23:35:43 +02:00
Leo Famulari 6671ce9370
gnu: ath9k-htc-firmware: Update binutils patch for binutils 2.27.
* gnu/packages/patches/ath9k-htc-firmware-binutils.patch: Remove
unnecessary and conflicting hunk. Add hunk required for binutils 2.27.
2016-10-12 16:17:22 -04:00
John Darrington eb419bc9fe
gnu: Add NFS related services.
* gnu/services/nfs.scm (pipefs-service-type): New variable,
(gss-service-type): New variable, (idmap-service-type) New variable.

* doc/guix.texi (Network File System): New node.
2016-10-12 19:26:10 +02:00
Leo Famulari 9ebe87fe59
gnu: python-celery: Update to 3.1.24.
* gnu/packages/python.scm (python-celery, python2-celery): Update to 3.1.24.
[arguments]: Disable some tests with break with Python 3.5.
2016-10-12 13:24:51 -04:00
Leo Famulari a6bb9e446f
gnu: python-billiard: Update to 3.3.0.23.
* gnu/packages/python.scm (python-billiard, python2-billiard):
Update to 3.3.0.23.
2016-10-12 13:24:51 -04:00
Leo Famulari 0cb5982268
gnu: python-kombu: Update to 3.0.37.
* gnu/packages/python.scm (python-kombu, python2-kombu): Update to 3.0.37.
[propagated-inputs]: Add python-redis.
2016-10-12 13:24:47 -04:00
Leo Famulari 68ce1875d5
Merge branch 'master' into core-updates 2016-10-12 12:42:37 -04:00
Tobias Geerinckx-Rice ff9c2d819a
gnu: mcelog: Update to 142.
* gnu/packages/linux.scm (mcelog): Update to 142.
2016-10-12 18:20:17 +02:00
Tobias Geerinckx-Rice 9c49da5778
gnu: btrfs-progs: Update to 4.8.1.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.1.
2016-10-12 18:19:48 +02:00
Mark H Weaver 9bc79c118e
gnu: icecat: Use normal 'sqlite'.
* gnu/packages/gnuzilla.scm (icecat)[inputs]: Use normal 'sqlite'.
2016-10-12 09:28:49 -04:00
Mark H Weaver abcf4858cd
Merge branch 'master' into core-updates 2016-10-12 09:28:14 -04:00
宋文武 82adf4952a
gnu: gtk+: Fix source hash.
* gnu/packages/gtk.scm (gtk+)[source]: Fix hash.
2016-10-12 21:12:34 +08:00
Mark H Weaver bfb48f4f33
gnu: icecat: Update to 45.3.0-gnu1-beta. Add fixes from Firefox ESR 45.4.0.
Includes fixes for CVE-2016-5250, CVE-2016-5257, CVE-2016-5261, CVE-2016-5270,
CVE-2016-5272, CVE-2016-5274, CVE-2016-5276, CVE-2016-5277, CVE-2016-5278,
CVE-2016-5280, CVE-2016-5281, and CVE-2016-5284.

* gnu/packages/gnuzilla.scm (mozilla-patch): New procedure.
(icecat): Update to 45.3.0-gnu1.
[source]: Add alternate source URI for the beta release.  Update patches.
[inputs]: Replace 'sqlite' input with a customized sqlite with
SQLITE_ENABLE_DBSTAT_VTAB support.
[native-inputs]: Add 'which'.
* gnu/packages/patches/icecat-avoid-bundled-includes.patch: Rename to...
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch: ... and adapt
to version 45.
* gnu/packages/patches/icecat-CVE-2016-2818-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt6.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt7.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt8.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt9.patch,
gnu/packages/patches/icecat-CVE-2016-2819.patch,
gnu/packages/patches/icecat-CVE-2016-2821.patch,
gnu/packages/patches/icecat-CVE-2016-2824.patch,
gnu/packages/patches/icecat-CVE-2016-2828.patch,
gnu/packages/patches/icecat-CVE-2016-2831.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
2016-10-11 12:59:26 -04:00
David Thompson b25f060fbd
gnu: redis: Update to 3.2.4.
* gnu/packages/databases.scm (redis): Update to 3.2.4.
[arguments]: Add LDFLAGS to #:make-flags to work around missing linker
flag.
2016-10-11 12:24:57 -04:00
Leo Famulari 6667ee3a7a
gnu: newt: Update source and home-page URLs.
* gnu/packages/slang.scm (newt)[source]: Update URL.
[home-page]: Update URL.
2016-10-11 12:06:11 -04:00
Leo Famulari 65375f74bc
gnu: newt: Update source and home-page URLs.
* gnu/packages/slang.scm (newt)[source]: Update URL.
[home-page]: Update URL.
2016-10-11 12:05:40 -04:00
Ben Woodcroft 3dd50d974b
gnu: vsearch: Update to 2.3.0.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.0.
2016-10-11 22:29:48 +10:00
Ben Woodcroft 99c9056141
gnu: diamond: Update to 0.8.23.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.23.
2016-10-11 19:51:49 +10:00
Efraim Flashner bde70caa06
gnu: qemu: Patch CVE-2016-857{6,7,8}.
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
* gnu/packages/patches/qemu-CVE-2016-8576.patch,
gnu/packages/patches/qemu-CVE-2016-8577.patch,
gnu/packages/patches/qemu-CVE-2016-8578.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2016-10-11 10:59:07 +03:00
Leo Famulari b4f91d0eda
gnu: borg: Run the test suite.
* gnu/packages/backup.scm (borg)[native-inputs]: Add python-pytest.
[arguments]: Invoke the tests with python-pytest after the install
phase. Set HOME=/tmp in the 'set-env' phase.
2016-10-11 01:51:47 -04:00
Leo Famulari 1df6d73bdf
gnu: attic: Disable the test suite.
* gnu/packages/backup.scm (attic)[arguments]: Set #:tests? #f.
2016-10-11 01:18:34 -04:00
Andy Wingo 085cca5bc1
gnu: cups-filters: Look for test page in own output dir.
* gnu/packages/cups.scm (cups-filters): Update to look for the test page
  template in the cups-filter output dir, as cups and cups-filter do not
  share an output dir.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-10-10 23:47:03 +02:00
Ricardo Wurmus 8f941dd24f
gnu: Add infamous-plugins.
* gnu/packages/audio.scm (infamous-plugins): New variable.
2016-10-10 22:41:34 +02:00
ng0 99a61dad33
gnu: font-un: Update source uri.
Fixes <http://bugs.gnu.org/22908>.

* gnu/packages/fonts.scm (font-un)[source]: Update source uri.
2016-10-10 13:52:51 -04:00
Efraim Flashner d68dacd9cc
gnu: perl-module-build: Update to 0.4220.
* gnu/packages/perl.scm (perl-module-build): Update to 0.4220.
2016-10-10 20:19:50 +03:00
Tobias Geerinckx-Rice 3b1b56379c
gnu: man-pages: Update to 4.08.
* gnu/packages/man.scm (man-pages): Update to 4.08.
2016-10-10 16:00:23 +02:00
Efraim Flashner 5be2931c1e
gnu: cmocka: Update to 1.1.0.
* gnu/packages/check.scm (cmocka): Update to 1.1.0.
2016-10-10 15:13:12 +03:00
Efraim Flashner 997b6ea504
gnu: cppcheck: Update to 1.76.
* gnu/packages/check.scm (cppcheck): Update to 1.76.
2016-10-10 13:50:23 +03:00
Efraim Flashner 7286dd218b
gnu: libuninameslist: Use 'modify-phases' syntax.
* gnu/packages/fontutils.scm (libuninameslist)[arguments]: Use
'modify-phases' syntax.
2016-10-10 12:58:14 +03:00
Efraim Flashner f726b7c526
gnu: libuninameslist: Update to 20160701.
* gnu/packages/fontutils.scm (libuninameslist): Update to 20160701.
2016-10-10 12:56:54 +03:00
Efraim Flashner b07e086373
gnu: bash-completion: Update to 2.4.
* gnu/packages/bash.scm (bash-completion): Update to 2.4.
[home-page]: Update to redirected home-page.
2016-10-10 11:58:11 +03:00
Efraim Flashner 36646075ef
gnu: obs: Update to 0.16.2.
* gnu/packages/video.scm (obs): Update to 0.16.2.
2016-10-10 11:07:07 +03:00
Efraim Flashner ff0ecefc0e
gnu: laby: Update source uri.
* gnu/packages/games.scm (laby)[source]: Use the publicly visible
download uri.
2016-10-10 09:36:07 +03:00
Ricardo Wurmus aed023ffd4
gnu: Add gxtuner.
* gnu/packages/music.scm (gxtuner): New variable.
2016-10-10 07:51:24 +02:00
Christopher Baines 6930804312
gnu: gnome: Add pinentry-gnome3 to gnome
* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Add
pinentry-gnome3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-10 00:06:15 +02:00
Christopher Baines 41edb23f5e
gnu: Add pinentry-gnome3.
* gnu/packages/gnupg.scm (pinentry-gnome3): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-10 00:06:15 +02:00
Christopher Baines 9614897b71
gnu: pinentry: Remove 'gpg2' from description.
* gnu/package/gnupg.scm (pinentry-tty, pinentry-gtk2, pinentry-qt)
[description]: The default in Guix is gpg, so only use this.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-10 00:06:15 +02:00
Al McElrath d976eccd26
gnu: sane-backends: Update to 1.0.25.
* gnu/packages/scanner.scm (sane-backends): Update to 1.0.25.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-09 17:50:28 -04:00
Marius Bakke fc0081213d
gnu: wpa-supplicant: Update to 2.6.
* gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Update to
  2.6. Remove 'patches' field.
* gnu/packages/patches/wpa-supplicant-CVE-2015-5310.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5314.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5315.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2015-5316.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4476.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt1.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt2.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt3.patch,
  gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt4.patch: Delete
  files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-09 17:37:36 -04:00
Ludovic Courtès 6f9d5b2e8c
gnu: guile-ssh: Update to 0.10.1.
* gnu/packages/ssh.scm (libssh-0.6): Remove.
(guile-ssh): Update to 0.10.1.
[inputs]: Use LIBSSH instead of LIBSSH-0.7.3.
[arguments]: Remove #:configure-flags.
2016-10-09 23:23:11 +02:00
Ludovic Courtès 92b725829b
gnu: guile-ssh: Compile .scm files after patching them.
Before this commit, the .go files were obtained by compiling the
unpatched .scm files, so they would refer to libguile-ssh without its
absolute file name.

* gnu/packages/ssh.scm (guile-ssh)[arguments]: Move
'fix-libguile-ssh-file-name' before 'build'.  Have it run "make install
-C libguile-ssh" first.
2016-10-09 23:23:11 +02:00
Ludovic Courtès 8a8f6590ec
gnu: guile-ssh: Use 'modify-phases'.
* gnu/packages/ssh.scm (guile-ssh)[arguments]: Use 'modify-phases'.
2016-10-09 23:23:11 +02:00
Efraim Flashner a9c958b5aa
gnu: gcj: Switch dejagnu test command.
* gnu/packages/gcc.scm (gcj)[arguments]: Switch the depreciated dejagnu
command 'absolute' for the new testing command 'file normalize'.
2016-10-10 00:16:56 +03:00
Kei Kebreau fedcb99d84
gnu: lynx: Update to 2.8.9dev.9 and fix GnuTLS support.
* gnu/packages/lynx.scm (lynx): Update to 2.8.9dev.9.
[arguments]: Append the path to the GnuTLS to "--with-gnutls=".
2016-10-09 16:58:48 -04:00
Tobias Geerinckx-Rice 8ea83d60e4
gnu: hexchat: Update to 2.12.2.
* gnu/packages/messaging.scm (hexchat): Update to 2.12.2.
2016-10-09 22:55:23 +02:00
Leo Famulari aae34a0c2d
gnu: vdirsyncer: Update to 0.13.1.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.13.1.
2016-10-09 16:49:27 -04:00
Ricardo Wurmus 6f83d224bb
gnu: tcsh: Do not define BSDWAIT.
* gnu/packages/patches/tcsh-do-not-define-BSDWAIT.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/shells.scm (tcsh)[source]: Use it.
2016-10-09 22:38:37 +02:00
Leo Famulari 9e672bcc0b
gnu: libupnp: Fix CVE-2016-6255.
* gnu/packages/patches/libupnp-CVE-2016-6255.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libupnp.scm (libupnp): Use it.
2016-10-09 15:57:28 -04:00
Ricardo Wurmus a76abae19f
gnu: ardour: Update to 5.4.
* gnu/packages/audio.scm (ardour): Update to 5.4.
[inputs]: Add libarchive.
2016-10-09 20:10:56 +02:00
Danny Milosavljevic adc2f048cb
gnu: Add gtkwave.
* gnu/packages/fpga.scm (gtkwave): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 18:19:22 +03:00
Danny Milosavljevic bca3797be4
gnu: Add arachne-pnr.
* gnu/packages/fpga.scm (arachne-pnr): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 18:19:22 +03:00
Danny Milosavljevic 36aa11c785
gnu: Add icestorm.
* gnu/packages/fpga.scm (icestorm): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 18:19:22 +03:00
Danny Milosavljevic 92fc940fdb
gnu: Add yosys.
* gnu/packages/fpga.scm (yosys): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 18:19:22 +03:00
Danny Milosavljevic 44721336de
gnu: Add iverilog.
* gnu/packages/fpga.scm (iverilog): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 18:19:21 +03:00
Danny Milosavljevic adba5f08de
gnu: Add abc.
* gnu/packages/fpga.scm (abc): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 18:19:10 +03:00
Ricardo Wurmus 7f43ff965f
gnu: guile-next: Increase timeout.
* gnu/packages/guile.scm (guile-next)[properties]: Set timeout to
20 hours.
2016-10-09 15:46:52 +02:00
Ricardo Wurmus a299a8992c
gnu: Add newlib-nano-arm-none-eabi.
* gnu/packages/embedded.scm (newlib-nano-arm-none-eabi): New variable.
2016-10-09 15:45:59 +02:00
Ricardo Wurmus 6c39886a80
gnu: Add newlib-arm-none-eabi.
* gnu/packages/embedded.scm (newlib-arm-none-eabi): New variable.
2016-10-09 15:45:59 +02:00
Ricardo Wurmus 35a37efbfd
gnu: Add arm-none-eabi cross compiler.
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for "arm-eabi".
* gnu/packages/embedded.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-10-09 15:45:59 +02:00
ng0 6ad13b591e
gnu: Add limnoria.
* gnu/packages/irc.scm (limnoria): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 13:09:54 +03:00
ng0 da069d7ecc
gnu: Add python-feedparser.
* gnu/packages/python.scm (python-feedparser): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 13:09:50 +03:00
ng0 73acc19334
gnu: Add python-socksipy-branch.
* gnu/packages/python.scm (python-socksipy-branch): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 13:09:31 +03:00
Andy Patterson bc1c995e6e
gnu: Add qtox.
* gnu/packages/messaging.scm (qtox): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 12:11:43 +03:00
Andy Patterson 62ea44fc89
gnu: Add sqlcipher.
* gnu/packages/database.scm (sqlcipher): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 12:09:19 +03:00
Danny Milosavljevic 0c60cc5346
gnu: Add mtd-utils.
* gnu/packages/linux.scm (mtd-utils): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-09 12:07:45 +03:00
Efraim Flashner 0c4944f07c
gnu: autogen: Update to 5.18.12.
* gnu/packages/autogen.scm (autogen): Update to 5.18.12.
[home-page]: Use https.
2016-10-09 09:44:40 +03:00
Efraim Flashner 9835458f4d
gnu: xboard: Update to 4.9.1.
* gnu/packages/games.scm (xboard): Update to 4.9.1.
[home-page]: Use https.
2016-10-09 09:18:51 +03:00
Efraim Flashner 72d6655c55
gnu: dejagnu: Use 'modify-phases' syntax.
* gnu/packages/dejagnu.scm (dejagnu)[arguments]: Use 'modify-phases'
syntax.
2016-10-09 08:56:10 +03:00
Efraim Flashner 539ab1afdd
gnu: dejagnu: Update to 1.6.
* gnu/packages/dejagnu.scm (dejagnu): Update to 1.6.
[home-page]: Use https.
[license]: Update to gpl3+.
2016-10-09 08:55:51 +03:00
Efraim Flashner caaa715d16
gnu: gdb: Update to 7.12.
* gnu/packages/gdb.scm (gdb): Update to 7.12.
[home-page]: Use https.
2016-10-09 06:47:59 +03:00
Efraim Flashner 80bc37737c
gnu: gnuastro: Update to 0.2.
* gnu/packages/astronomy.scm (gnuastro): Update to 0.2.
[home-page]: Use https.
2016-10-08 23:55:40 +03:00
Efraim Flashner e775f48ebe
gnu: python-xlrd: Update source location.
* gnu/packages/python.scm (python-xlrd)[source]: Use 'pypi-uri' syntax.
2016-10-08 23:41:01 +03:00
Efraim Flashner 824f7de882
gnu: freeipmi: Update to 1.5.4.
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.4.
[home-page]: Use https.
2016-10-08 23:32:19 +03:00
Efraim Flashner 4726dd2063
gnu: ccache: Update to 3.3.2.
* gnu/packages/ccache.scm (ccache): Update to 3.3.2.
2016-10-08 23:26:29 +03:00
Efraim Flashner 6e185f74b7
gnu: offlineimap: Update to 7.0.8.
* gnu/packages/mail.scm (offlineimap): Update to 7.0.8.
2016-10-08 23:26:29 +03:00
Efraim Flashner 9917b5f008
gnu: ldb: Update to 1.1.27.
* gnu/packages/samba.scm (ldb): Update to 1.1.27.
2016-10-08 23:26:28 +03:00
Efraim Flashner 6ccb78144c
gnu: tdb: Use 'modify-phases' syntax.
* gnu/packages/databases.scm (tdb)[arguments]: Use 'modify-phases' syntax.
2016-10-08 23:26:28 +03:00
Efraim Flashner 1abd090487
gnu: tdb: Update to 1.3.11.
* gnu/packages/databases.scm (tdb): Update to 1.3.11.
[home-page]: Use https.
2016-10-08 23:26:28 +03:00
Efraim Flashner 881799892c
gnu: tevent: Update to 0.9.31.
* gnu/packages/samba.scm (tevent): Update to 0.9.31.
2016-10-08 23:26:27 +03:00
Efraim Flashner 93151e4185
gnu: talloc: Update to 2.1.8.
* gnu/packages/samba.scm (talloc): Update to 2.1.8.
2016-10-08 23:26:27 +03:00
Efraim Flashner d073b58f67
gnu: samba: Update to 4.5.0.
* gnu/packages/samba.scm (samba): Update to 4.5.0.
[source]: Update source uri.
2016-10-08 23:26:26 +03:00
Alex Kost 86d959bdfd
gnu: emacs-hydra: Update to 0.13.6.
* gnu/packages/emacs.scm (emacs-hydra): Update to 0.13.6.
2016-10-08 21:03:43 +03:00
Alex Kost 35d1ade76d
gnu: emacs-hl-todo: Update to 1.7.1.
* gnu/packages/emacs.scm (emacs-hl-todo): Update to 1.7.1.
2016-10-08 21:03:43 +03:00
Alex Kost 0e7c408995
gnu: emacs-hl-todo: Fix source file-name.
* gnu/packages/emacs.scm (emacs-hl-todo)[source]: Use versioned
file-name.
2016-10-08 21:03:43 +03:00
Alex Kost 59c827f45f
gnu: emacs-smartparens: Update to 1.8.0.
* gnu/packages/emacs.scm (emacs-smartparens): Update to 1.8.0.
2016-10-08 21:03:43 +03:00
Alex Kost 4a1eafb071
gnu: emacs-with-editor: Update to 2.5.6.
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.5.6.
2016-10-08 21:03:43 +03:00
Alex Kost fb0de6f77c
gnu: geiser-next: Deprecate.
* gnu/packages/emacs.scm (geiser-next): Deprecate.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-10-08 21:03:43 +03:00
Alex Kost 113e23e099
gnu: geiser: Update to 0.9.
* gnu/packages/emacs.scm (geiser): Update to 0.9.
2016-10-08 21:03:43 +03:00
Mark H Weaver cb60e975c2
gnu: linux-libre: Update to 4.8.1.
* gnu/packages/linux.scm (linux-libre): Update to 4.8.1.
(%linux-libre-version, %linux-libre-hash): Update to 4.8.1.
2016-10-08 11:35:43 -04:00
Mark H Weaver ca86791881
gnu: linux-libre@4.4: Update to 4.4.24.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.24.
2016-10-08 11:32:37 -04:00
Andy Wingo 95264cc6b9
gnu: cups-filters: Use ghostscript with CUPS driver.
* gnu/packages/cups.scm (ghostscript/cups): New variable.
  (cups-filters): Use ghostscript/cups.  Capture path to "gs" at
  compilation time.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-08 15:44:11 +02:00
Ludovic Courtès b6dfaf17a1
gnu: libxcb: Update to 1.11.1.
* gnu/packages/xorg.scm (libxcb): Update to 1.11.1.
2016-10-08 15:34:04 +02:00
Andy Patterson 96784438f5
gnu: Add sbcl-stumpwm-with-slynk.
* gnu/packages/lisp.scm (sbcl-stumpwm+slynk): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:36 +08:00
Andy Patterson e3e171ee81
gnu: Add cl-slynk.
* gnu/packages/lisp.scm (cl-slynk, sbcl-slynk, ecl-slynk): New
variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:36 +08:00
Andy Patterson d075960f60
gnu: Add cl-stumpwm.
* gnu/packages/lisp.scm (cl-stumpwm, sbcl-stumpwm, ecl-stumpwm): New
variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 4b51b21ccf
gnu: Add cl-clx.
* gnu/packages/lisp.scm (cl-clx, sbcl-clx, ecl-clx): New variables.
* gnu/packages/patches/clx-remove-demo.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 5aa608a7e8
gnu: Add cl-ppcre.
* gnu/packages/lisp.scm (cl-ppcre, sbcl-cl-pprcre, ecl-cl-pprcre): New
variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 3c55c780f9
gnu: Add cl-flexi-streams.
* gnu/packages/lisp.scm (cl-flexi-streams, sbcl-flexi-streams)
(ecl-flexi-streams): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 059cab307f
gnu: Add cl-trivial-gray-streams.
* gnu/packages/lisp.scm (cl-trivial-gray-streams)
(sbcl-trivial-gray-streams, ecl-trivial-gray-streams): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 8662809d1b
gnu: Add cl-bordeaux-threads.
* gnu/packages/lisp.scm (cl-bordeaux-threads, sbcl-bordeaux-threads)
(ecl-bordeaux-threads): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson 86022c926b
gnu: Add cl-fiveam.
* gnu/packages/lisp.scm (cl-fiveam, sbcl-fiveam, ecl-fiveam): New
variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Andy Patterson a72debb7cc
gnu: Add cl-alexandria.
* gnu/packages/lisp.scm (cl-alexandria, sbcl-alexandria)
(ecl-alexandria): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-08 21:20:35 +08:00
Ben Woodcroft 53aec0999f
gnu: bundler: Update to 1.13.2.
* gnu/packages/ruby.scm (bundler): Update to 1.13.2.
2016-10-08 22:47:18 +10:00
Ben Woodcroft c2ad4d701e
gnu: python-xlrd: Update to 1.0.0.
* gnu/packages/python.scm (python-xlrd, python2-xlrd): Update to 1.0.0.
2016-10-08 22:29:59 +10:00
Ben Woodcroft f49511dbff
gnu: ruby-mime-types-data: Update to 3.2016.0521.
* gnu/packages/ruby.scm (ruby-mime-types-data): Update to 3.2016.0521.
2016-10-08 22:29:58 +10:00
Ben Woodcroft d034c779eb
gnu: ruby-tzinfo-data: Update to 1.2016.7.
* gnu/packages/ruby.scm (ruby-tzinfo-data): Update to 1.2016.7.
2016-10-08 22:29:58 +10:00
Ben Woodcroft 5ed00e13d2
gnu: ruby-domain-name: Update to 0.5.20160826.
* gnu/packages/ruby.scm (ruby-domain-name): Update to 0.5.20160826.
2016-10-08 22:29:58 +10:00
Ben Woodcroft a751afb217
gnu: r-mgcv: Update to 1.8-15.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-15.
2016-10-08 22:29:58 +10:00
Ben Woodcroft d91cb67dd7
gnu: ruby-sequel: Update to 4.39.0.
* gnu/packages/ruby.scm (ruby-sequel): Update to 4.39.0.
2016-10-08 22:29:55 +10:00
Ricardo Wurmus 7fd30d1be4
gnu: yoshimi: Update to 1.4.1.
* gnu/packages/music.scm (yoshimi): Update to 1.4.1.
[arguments]: Add build phase "find-ncurses".
2016-10-08 14:03:56 +02:00
Ben Woodcroft 9602e3cce9
gnu: python2-dendropy: Fix tests.
* gnu/packages/bioinformatics.scm (python2-dendropy)[source]: Use unpatched
source.
[arguments]: Use nose to run tests.
[native-inputs]: Add python2-nose.
2016-10-08 21:38:17 +10:00
Leo Famulari f803f775d2
gnu: vigra: Workaround rounding error in test suite on 32-bit CPUs.
* gnu/packages/image.scm (vigra)[arguments]: Pass '-ffloat-store' to
C_FLAGS and CXX_FLAGS.
2016-10-07 22:44:30 -04:00
Ricardo Wurmus 382aacc5a3
gnu: drumstick: Update to 1.1.0.
* gnu/packages/music.scm (drumstick): Update to 1.1.0.
2016-10-08 00:15:53 +02:00
Ricardo Wurmus e35ce6893c
gnu: tbb: Update to 2017_20160916.
* gnu/packages/tbb.scm (tbb): Update to 2017_20160916.
2016-10-08 00:03:24 +02:00
Ludovic Courtès e052c7e1d5
gnu: gcc@4.8: Use an older Texinfo.
* gnu/packages/gcc.scm (gcc-4.8)[native-inputs]: New field.
(gcc-4.9): Inherit from GCC-4.7.
2016-10-07 22:12:16 +02:00
Efraim Flashner fb29e737d4
gnu: ncdu: Update to 1.12.
* gnu/packages/ncdu.scm (ncdu): Update to 1.12.
[source]: Use https.
[license]: Use https.
[home-page]: Use https.
2016-10-07 14:26:12 +03:00
Efraim Flashner 2ff746dcd2
gnu: isl: Add support for aarch64.
* gnu/packages/gcc.scm (isl)[source]: Add patch.
* gnu/packages/patches/isl-0.11.1-aarch64-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-10-07 12:26:44 +03:00
Efraim Flashner 21e5e1e070
gnu: cmake: Build 'ccmake' binary.
* gnu/packages/cmake.scm (cmake)[inputs]: Add ncurses.
2016-10-07 12:26:36 +03:00
Ricardo Wurmus b314360f30
gnu: abbaye: Update source URL.
* gnu/packages/games.scm (abbaye)[source]: Update tarball URL.
2016-10-07 09:22:44 +02:00
Leo Famulari ae336f8b84
gnu: khal: Update to 0.8.4.
* gnu/packages/calendar.scm (khal): Update to 0.8.4.
2016-10-07 01:48:45 -04:00
John Darrington c8f354588e
gnu: tzdata: Use modify-phases
* gnu/packages/base.scm (tzdata)[arguments]: Replace alist- procedures
with modify-phases
2016-10-07 06:59:49 +02:00
John Darrington 12b85b3787
gnu: tzdata: Fix dangling symbolic link.
* gnu/packages/base.scm (tzdata)[arguments]: Replace dangling symbolic link
with the correct path.
2016-10-07 06:59:42 +02:00
Leo Famulari 1d8de185b8
gnu: openssl: Update to 1.0.2j.
* gnu/packages/tls.scm (openssl): Update to 1.0.2j.
[replacement]: Remove field
[source]: Remove 'openssl-CVE-2016-2177.patch' and
'openssl-CVE-2016-2178.patch'.
(openssl-1.0.2j): Remove variable.
(openssl-next)[replacement]: Remove field.
* gnu/packages/patches/openssl-CVE-2016-2177.patch,
gnu/packages/patches/openssl-CVE-2016-2178.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-10-06 17:50:17 -04:00
Leo Famulari 17b56c06e9
gnu: tzdata: Update to 2016g.
* gnu/packages/base.scm (tzdata): Update to 2016g.
2016-10-06 17:45:27 -04:00
Leo Famulari 7ca97fae36
gnu: lvm2: Make sure compiled objects are stripped.
* gnu/packages/linux.scm (lvm2)[arguments]: Add 'make-objects-writeable' phase.
2016-10-06 17:43:44 -04:00
Leo Famulari 123c0ffb87
gnu: lvm2: Update to 2.02.166.
* gnu/packages/linux.scm (lvm2): Update to 2.02.166.
2016-10-06 17:43:44 -04:00
Leo Famulari 3afbc6b3c3
gnu: lvm2: Use 'modify-phases'.
* gnu/packages/linux.scm (lvm2)[arguments]: Use 'modify-phases'.
2016-10-06 17:43:39 -04:00
Efraim Flashner 59fed2b609
gnu: nginx: Update to 1.11.4.
* gnu/packages/web.scm (nginx): Update to 1.11.4.
[source] Use https.
[home-page]: Use https.
2016-10-06 22:01:00 +03:00
Thomas Danckaert 0f43f8354c
gnu: Add hdf-eos5.
* gnu/packages/maths.scm (hdf-eos5): New variable.
* gnu/packages/patches/hdf-eos5-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos5-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos5-fix-szip.patch: New file.
* gnu/packages/patches/hdf-eos5-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-06 18:14:45 +02:00
8p8c b94ee996ce
gnu: font-hack: Remove empty doc directory.
* gnu/packages/fonts.scm (font-hack)[arguments]: Remove superfluous code
in #:builder.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-06 20:59:05 +08:00
8p8c 3126fd8820
services: xorg: Add ATI video driver to the default modules.
* gnu/services/xorg.scm (%default-xorg-modules): Add xf86-video-ati.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-06 20:46:50 +08:00
Andy Patterson fb7dc6d647
gnu: ecl: Honour XDG_DATA_DIRS/ecl-bundle-systems.
* gnu/packages/lisp.scm (ecl)[source]: Add snippet.
[native-search-paths]: Add XDG_DATA_DIRS.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-06 20:33:55 +08:00
Andy Patterson 8d0489aeb6
gnu: sbcl: Honour XDG_DATA_DIRS/sbcl-bundle-systems.
* gnu/packages/lisp.scm (asdf-substitutions): New variable.
(sbcl)[source]: Add snippet.
[native-search-paths]: Add XDG_DATA_DIRS.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-06 20:33:55 +08:00
Ricardo Wurmus eb0ff8a382
gnu: Add ghc-pandoc-citeproc.
* gnu/packages/haskell.scm (ghc-pandoc-citeproc): New variable.
2016-10-06 14:18:25 +02:00
Ricardo Wurmus bfdfb0f63f
gnu: Add ghc-xml-conduit.
* gnu/packages/haskell.scm (ghc-xml-conduit): New variable.
2016-10-06 14:18:25 +02:00
Ricardo Wurmus e9ef2c51d5
gnu: Add ghc-xml-types.
* gnu/packages/haskell.scm (ghc-xml-types): New variable.
2016-10-06 14:18:25 +02:00
Ricardo Wurmus 1aa45bbf6f
gnu: Add ghc-conduit-extra.
* gnu/packages/haskell.scm (ghc-conduit-extra): New variable.
2016-10-06 14:18:25 +02:00
Ricardo Wurmus 9ce764b689
gnu: Add ghc-rfc5051.
* gnu/packages/haskell.scm (ghc-rfc5051): New variable.
2016-10-06 14:18:24 +02:00
Ricardo Wurmus 37e02bf65b
gnu: Add ghc-hs-bibutils.
* gnu/packages/haskell.scm (ghc-hs-bibutils): New variable.
2016-10-06 14:18:24 +02:00
Ricardo Wurmus b376463552
gnu: ghc-streaming-commons: Remove standard packages from inputs.
The "directory" and "transformers" modules are part of GHC and should
not be among the inputs to avoid conflicts.

* gnu/packages/haskell.scm (ghc-streaming-commons)[inputs]: Remove
"ghc-directory" and "ghc-transformers".
2016-10-06 14:18:21 +02:00
Ricardo Wurmus fc47c7d635
gnu: Add r-bsgenome-celegans-ucsc-ce10.
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): New
variable.
2016-10-06 10:33:43 +02:00
Leo Famulari 6a4cbc6f12
gnu: nss-certs and nss: Update to 3.27.1.
* gnu/packages/certs.scm (nss-certs): Update to 3.27.1.
* gnu/packages/gnuzilla.scm (nss): Update to 3.27.1.
2016-10-05 20:04:50 -04:00
Leo Famulari 22f08f0605
gnu: libxvmc: Update to 1.0.10.
* gnu/packages/xorg.scm (libxvmc): Update to 1.0.10.
[replacement]: Remove field.
(libxvmc/fixed): Remove variable.
* gnu/packages/patches/libxvmc-CVE-2016-7953.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-05 19:36:26 -04:00
Leo Famulari 62ad505603
gnu: libxv: Update to 1.0.11.
* gnu/packages/xorg.scm (libxv): Update to 1.0.11.
[replacement]: Remove field.
(libxv/fixed): Remove variable.
* gnu/packages/patches/libxv-CVE-2016-5407.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-05 19:36:25 -04:00
Leo Famulari 82e6a4341b
gnu: libxtst: Update to 1.2.3.
* gnu/packages/xorg.scm (libxtst): Update to 1.2.3.
[replacement]: Remove field.
(libxtst/fixed): Remove variable.
* gnu/packages/patches/libxtst-CVE-2016-7951-CVE-2016-7952.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-05 19:36:25 -04:00
Leo Famulari 9eb76bd3e5
gnu: libxrender: Update to 0.9.10.
* gnu/packages/xorg.scm (libxrender): Update to 0.9.10.
[replacement]: Remove field.
(libxrender/fixed): Remove variable.
* gnu/packages/patches/libxrender-CVE-2016-7949.patch,
gnu/packages/patches/libxrender-CVE-2016-7950.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-10-05 19:36:25 -04:00
Leo Famulari 2e81b0b5bf
gnu: libxrandr: Update to 1.5.1.
* gnu/packages/xorg.scm (libxrandr): Update to 1.5.1.
[replacement]: Remove field.
(libxrandr/fixed): Remove variable.
* gnu/packages/patches/libxrandr-CVE-2016-7947-CVE-2016-7948.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-05 19:36:24 -04:00
Leo Famulari 571fa535cd
gnu: libxi: Update to 1.7.7.
* gnu/packages/xorg.scm (libxi): Update to 1.7.7.
[replacement]: Remove field.
(libxi/fixed): Remove variable.
* gnu/packages/patches/libxi-CVE-2016-7945-CVE-2016-7946.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-05 19:36:24 -04:00
Leo Famulari 3e1ed70f74
gnu: libxfixes: Update to 5.0.3.
* gnu/packages/xorg.scm (libxfixes): Update to 5.0.3.
[replacement]: Remove field.
(libxfixes/fixed): Remove variable.
* gnu/packages/patches/libxfixes-CVE-2016-7944.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-05 19:36:24 -04:00
Leo Famulari 4dd841c1dc
gnu: libx11: Update to 1.6.4.
* gnu/packages/xorg.scm (libx11): Update to 1.6.4.
[replacement]: Remove field.
(libx11/fixed): Remove variable.
* gnu/packages/patches/libx11-CVE-2016-7942.patch,
gnu/packages/patches/libx11-CVE-2016-7943.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-10-05 19:36:24 -04:00
Leo Famulari b19c7989b7
Merge branch 'master' into core-updates 2016-10-05 19:15:25 -04:00
Leo Famulari 1459476089
gnu: e2fsprogs: Fix typo in comment.
* gnu/packages/linux.scm (e2fsprogs)[arguments]: Fix typo in comment.
2016-10-05 18:59:29 -04:00
Leo Famulari 7d45365684
gnu: e2fsprogs: Disable parallel build.
* gnu/packages/linux.scm (e2fsprogs)[arguments]: Add #:parallel-build? #f.
2016-10-05 17:41:44 -04:00
Leo Famulari 87312f8aa1
gnu: json-c: Update to 0.12.1.
* gnu/packages/web.scm (json-c): Update to 0.12.1.
2016-10-05 17:38:48 -04:00
Leo Famulari 813062a5f7
gnu: libxvmc: Fix CVE-2016-7953.
* gnu/packages/patches/libxvmc-CVE-2016-7953.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxvmc)[replacement]: New field.
(libxvmc/fixed): New variable.
2016-10-05 17:37:23 -04:00
Leo Famulari e73631a906
gnu: libxv: Fix CVE-2016-5407.
* gnu/packages/patches/libxv-CVE-2016-5407.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxv)[replacement]: New field.
(libxv/fixed): New variable.
2016-10-05 17:37:22 -04:00
Leo Famulari 1f90b80f8b
gnu: libxtst: Fix CVE-2016-{7951,7952}.
* gnu/packages/patches/libxtst-CVE-2016-7951-CVE-2016-7952.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxtst)[replacement]: New field.
(libxtst/fixed): New variable.
2016-10-05 17:37:22 -04:00
Leo Famulari 666d40193c
gnu: libxrender: Fix CVE-2016-{7949,7950}.
* gnu/packages/patches/libxrender-CVE-2016-7949.patch,
gnu/packages/patches/libxrender-CVE-2016-7950.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (libxrender)[replacement]: New field.
(libxrender/fixed): New variable.
2016-10-05 17:37:22 -04:00
Leo Famulari a300db1c7f
gnu: libxrandr: Fix CVE-2016-{7947,7948}.
* gnu/packages/patches/libxrandr-CVE-2016-7947-CVE-2016-7948.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxrandr)[replacement]: New field.
(libxrandr/fixed): New variable.
2016-10-05 17:37:21 -04:00
Leo Famulari b78ba2274f
gnu: libxi: Fix CVE-2016-{7945,7946}.
* gnu/packages/patches/libxi-CVE-2016-7945-CVE-2016-7946.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxi)[replacement]: New field.
(libxi/fixed): New variable.
2016-10-05 17:37:21 -04:00
Leo Famulari b50c6bf2a8
gnu: libxfixes: Fix CVE-2016-7944.
* gnu/packages/patches/libxfixes-CVE-2016-7944.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxfixes)[replacement]: New field.
(libxfixes/fixed): New variable.
2016-10-05 17:37:21 -04:00
Leo Famulari 13c10b4ca4
gnu: libx11: Fix CVE-2016-{7942,7943}.
* gnu/packages/patches/libx11-CVE-2016-7942.patch,
gnu/packages/patches/libx11-CVE-2016-7943.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (libx11)[replacement]: New field.
(libx11/fixed): New variable.
2016-10-05 17:37:15 -04:00
ng0 81d5a62fb1
gnu: Remove lispf4.
The package in its current state is unusable and documentation with unclear
licenses is included.

Also, the file 'lispf42.c' (and possible others) is generated C code and
thus not "source code" as we define it.

* gnu/packages/lisp.scm (lispf4): Delete variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-05 16:23:56 -04:00
Tobias Geerinckx-Rice 151df6ab3d
gnu: btrfs-progs: Update to 4.8.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.
2016-10-05 22:07:21 +02:00
Leo Famulari bda45da336
gnu: libass: Update to 0.13.4 [fixes CVE-2016-{7969,7970,7972}.
* gnu/packages/video.scm (libass): Update to 0.13.4.
2016-10-05 16:04:26 -04:00
Efraim Flashner a4796b29e1
gnu: gnucash: Update to 2.6.14.
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.14.
2016-10-05 20:42:49 +03:00
Danny Milosavljevic b04ca7a12b
gnu: Add sunxi-tools.
* gnu/packages/admin.scm (sunxi-tools): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-05 18:50:52 +02:00
Leo Famulari 517318adf0
gnu: Add Vc.
* gnu/packages/maths.scm (vc): New variable.
2016-10-05 12:49:41 -04:00
Ludovic Courtès 9d50da7060
gnu: wordnet: Make sure the self-reference is visible to the GC.
Before that, "guix gc --references $(guix build wordnet)" would not show
WordNet itself, erroneously so.

* gnu/packages/wordnet.scm (wordnet)[arguments]: Add -fno-builtin-strcpy
  to #:configure-flags.
2016-10-05 18:35:55 +02:00
Ludovic Courtès 939f87438c
gnu: wordnet: Compile with optimizations.
* gnu/packages/wordnet.scm (wordnet)[arguments]: Add -O2 to
  #:configure-flags.
2016-10-05 18:35:55 +02:00
Kei Kebreau cd1869cdbd
gnu: Add hyperrogue.
* gnu/packages/games.scm (hyperrogue): New variable.
2016-10-05 10:10:36 -04:00
Ludovic Courtès 358db0041f
gnu: grub: Make dependency on mdadm explicit.
* gnu/packages/grub.scm (grub)[arguments]: Path getroot.c in
'patch-stuff' phase.
[inputs]: Add MDADM.
2016-10-05 15:11:08 +02:00
Ludovic Courtès ab2cc5cde1
gnu: gsl: Disable failing tests on i686.
* gnu/packages/patches/gsl-test-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (gsl)[source](patches): New field.
2016-10-05 15:11:08 +02:00
Leo Famulari 50948a9026
gnu: git: Update to 2.10.1.
* gnu/packages/version-control.scm (git): Update to 2.10.1.
2016-10-05 01:57:51 -04:00
Ludovic Courtès acbf2c4f60
gnu: guix: Honor the user's 'GUILE_LOAD_PATH'.
* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Use
'prefix' when wrapping 'guix' for 'GUILE_LOAD_PATH'.
2016-10-04 22:40:46 +02:00
Ludovic Courtès 6e52376d2e
mapped-devices: Properly open RAID devices.
This fixes a type error introduced in
7f8ad82bf2, given that SOURCES is a list.

* gnu/system/mapped-devices.scm (open-raid-device): Add 'apply'
invocation.
2016-10-04 19:51:53 +02:00
Ludovic Courtès 8cecd22e4a
gnu: Add GoAccess.
* gnu/packages/web.scm (goaccess): New variable.
2016-10-04 17:44:27 +02:00
Ludovic Courtès a9764b7d2e
gnu: pies: Update to 1.3.
* gnu/packages/admin.scm (pies): Update to 1.3.
[arguments]: New field.
2016-10-04 16:38:00 +02:00
Ludovic Courtès 9d3425f24a
gnu: global: Update to 6.5.5.
* gnu/packages/code.scm (global): Update to 6.5.5.
2016-10-04 16:37:59 +02:00
Ludovic Courtès 8c82e1c9d3
gnu: gsl: Update to 2.2.1.
* gnu/packages/maths.scm (gsl): Update to 2.2.1.
2016-10-04 16:37:59 +02:00
Ludovic Courtès bac67a5a5c
gnu: direvent: Update to 5.1.
* gnu/packages/admin.scm (direvent): Update to 5.1.
[arguments]: Augment 'patch-/bin/sh' phase to patch 'progman.c' and
'testsuite'.
2016-10-04 16:37:59 +02:00
Ludovic Courtès d35f8c7cb6
gnu: gnu-c-manual: Update to 0.2.5.
* gnu/packages/gcc.scm (gnu-c-manual): Update to 0.2.5.
2016-10-04 16:37:59 +02:00
Ludovic Courtès a884fa2141
gnu: rush: Update to 1.8.
* gnu/packages/rush.scm (rush): Update to 1.8.
[source]: Remove 'patches'.
* gnu/packages/patches/cpio-gets-undeclared.patch,
gnu/packages/patches/rush-CVE-2013-6889.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2016-10-04 16:37:59 +02:00
Leo Famulari 491dbac415
gnu: cryptsetup: Update to 1.7.2.
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.2.
[source]: Use kernel mirror.
[home-page]: Update URL.
2016-10-04 10:24:46 -04:00
Ben Woodcroft 2c3eb4b85b
gnu: metabat: Update to 0.32.4-1.cbdca756.
* gnu/packages/bioinformatics.scm (metabat): Update to 0.32.4-1.cbdca756.
* gnu/packages/patches/metabat-remove-compilation-date.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-10-04 22:02:52 +10:00
Ludovic Courtès 47c14714a4
gnu: fish: Do not use the bundled PCRE2.
* gnu/packages/shells.scm (fish)[inputs]: Add PCRE2.
2016-10-04 11:26:45 +02:00
Arun Isaac a8d3bc473d
gnu: fish: Add input bc.
Fixes <http://bugs.gnu.org/24433>.

* gnu/packages/shells.scm (fish)[inputs]: Add bc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-04 11:26:45 +02:00
Ricardo Wurmus c5d17d50d0
gnu: warzone2100: Update to 3.2.1.
* gnu/packages/games.scm (warzone2100): Update to 3.2.1.
[arguments]: Remove phase "set-sdl-paths", add phase
"link-tests-with-qt", add phase "remove-reference-to-missing-file".
[inputs]: Replace "qt-4" with "qt", replace "sdl-union" with
"sdl2", add "openssl".
2016-10-04 10:21:38 +02:00
Ricardo Wurmus 5c31e981bb
gnu: ruby-nokogumbo: Move "build-gemspec" phase after "unpack".
* gnu/packages/ruby.scm (ruby-nokogumbo)[arguments]: Move
"build-gemspec" phase after "unpack".
2016-10-04 08:54:55 +02:00
Ricardo Wurmus 92a312dc86
gnu: python-pathlib: Disable tests.
* gnu/packages/python.scm (python-pathlib)[arguments]: Disable tests.
2016-10-04 08:54:55 +02:00
Ricardo Wurmus ced12a7bff
gnu: ghmm: Run tests after install.
* gnu/packages/machine-learning.scm (ghmm)[arguments]: Move "check"
phase after "install"; add phase "fix-PYTHONPATH".
2016-10-04 08:54:55 +02:00
Ricardo Wurmus 4262d178a7
gnu: raincat: Add missing input.
* gnu/packages/games.scm (raincat)[inputs]: Add freeglut.
2016-10-04 08:48:55 +02:00
Ricardo Wurmus d910d584b7
gnu: supertux: Update to 0.5.0.
* gnu/packages/games.scm (supertux): Update to 0.5.0.
[arguments]: Add flag to disable static boost libraries.
2016-10-04 08:38:09 +02:00
Leo Famulari c88cd83b71
gnu: parallel: Update to 20160922.
* gnu/packages/parallel.scm (parallel): Update to 20160922.
2016-10-03 23:59:29 -04:00
Mark H Weaver 1927839dcb
gnu: linux-libre: Update to 4.8.
* gnu/packages/linux.scm (linux-libre): Update to 4.8.
* gnu/packages/linux-libre-4.7-x86_64.conf,
gnu/packages/linux-libre-4.7-i686.conf: Delete files.
* gnu/packages/linux-libre-4.8-x86_64.conf,
gnu/packages/linux-libre-4.8-i686.conf: New files.
* Makefile.am (KCONFIGS): Update accordingly.
2016-10-03 22:05:51 -04:00
Mark H Weaver e9b718a05a
gnu: nss: Increase build timeout to 60 hours.
* gnu/packages/gnuzilla.scm (nss)[properties]: Increase build timeout to
60 hours.
2016-10-03 22:05:32 -04:00
ng0 6adda006be
gnu: gnunet: Add inputs.
* gnu/packages/gnunet.scm (gnunet)[inputs]: Add perl, jansson, nss, gmp, bluez,
glib, libogg.
[native-inputs]: Move python-2 from here ...
[inputs]: ... to here.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-03 17:43:23 -04:00
Ludovic Courtès 0f7cd95b81
gnu: gctp: 'license' field now has a <license> value.
* gnu/packages/maths.scm (gctp)[license]: Change to a <license> record.
2016-10-03 23:20:23 +02:00
Ludovic Courtès b1cb9f281a
gnu: libgcrypt@1.7: Replacement now has an accurate 'version' field.
* gnu/packages/gnupg.scm (libgcrypt-1.7.3)[version]: New field.
2016-10-03 23:16:48 +02:00
Ludovic Courtès 8389e6f06e
gnu: openssl@1.0: Replacement now has an accurate 'version' field.
* gnu/packages/tls.scm (openssl-1.0.2j)[name, version]: New fields.
2016-10-03 23:16:48 +02:00
Leo Famulari 6524c1cfcf
gnu: libarchive: Incorporate grafted security patches.
* gnu/packages/backup.scm (libarchive)[source]: Add patches from
libarchive/fixed.
[replacement]: Remove field.
(libarchive/fixed): Remove variable.
2016-10-03 17:08:23 -04:00
Leo Famulari 9c2130757c
Merge branch 'master' into core-updates 2016-10-03 17:08:05 -04:00
Leo Famulari b38e97e03b
gnu: libarchive: Fix several security issues.
* gnu/packages/backup.scm (libarchive)[replacement]: New field.
(libarchive/fixed): New variable.
* gnu/packages/patches/libarchive-7zip-heap-overflow.patch,
gnu/packages/patches/libarchive-fix-symlink-check.patch,
gnu/packages/patches/libarchive-fix-filesystem-attacks.patch,
gnu/packages/patches/libarchive-safe_fprintf-buffer-overflow.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2016-10-03 16:52:28 -04:00
Leo Famulari 85358aef8e
gnu: perl-dbd-mysql: Update to 4.037 [fixes CVE-2016-1246].
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.037.
2016-10-03 14:39:11 -04:00
Ludovic Courtès 2b4363891c
tests: ssh: Add Dropbear test.
* gnu/tests/ssh.scm (run-ssh-test): Try authenticating with
'userauth-none!' when 'userauth-password!' fails.
(%test-dropbear): New variable.
2016-10-03 15:18:51 +02:00
Ludovic Courtès 0e59885060
tests: ssh: Generalize.
* gnu/tests/ssh.scm (%openssh-os): Rename to...
(%base-os): ... this.
[services]: Remove 'openssh-service-type' instance.
(os-with-service): New procedure.
(run-openssh-test): Rename to...
(run-ssh-test): ... this.  Add 'ssh-service' and 'pid-file' parameters.
Use 'os-with-service' to add SSH-SERVICE to %BASE-OS.  Honor PID-FILE.
(%test-openssh): Adjust accordingly.
2016-10-03 15:18:28 +02:00
Ludovic Courtès 26cfc415be
services: rottlog: Add Rottlog to the global profile.
* gnu/services/admin.scm (rottlog-service-type): Extend
PROFILE-SERVICE-TYPE.
2016-10-03 14:48:44 +02:00
Ludovic Courtès 4d67ed70a3
services: rottlog: Improve default weekly rotations.
* gnu/services/admin.scm (%rotated-files): Add "/var/log/maillog".
(syslog-rotation-config): Change parameter to 'files'.  Return a
string-append gexp for all of FILES.
(simple-rotation-config): Remove unnecessary 'postrotate' and
'endscript'.
(%default-rotations): Adjust accordingly.
2016-10-03 14:47:55 +02:00
Ludovic Courtès d5b0c9024e
tests: Add 'openssh-service-type' test.
* gnu/tests/ssh.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-10-03 00:38:28 +02:00
Ludovic Courtès d8f3128119
services: openssh-service-type: Expose 'openssh-configuration'.
* gnu/services/ssh.scm (<openssh-configuration>): Add default values.
[pubkey-authentication?]: Rename to...
[public-key-authentication?]: ... this.
(openssh-service): Remove.
* doc/guix.texi (Networking Services): Adjust accordingly.
2016-10-03 00:38:28 +02:00
Jan Nieuwenhuizen 92c03a8715
services: Add rottlog.
* gnu/services/admin.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (Log Rotation): New node.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-10-03 00:38:28 +02:00
Ricardo Wurmus d79e8f65b5
gnu: ghc-process: Replace reference to /bin/sh.
* gnu/packages/haskell.scm (ghc-process)[arguments]: Add phases
"patch-reference-to-/bin/sh" to replace reference to /bin/sh.
2016-10-02 17:31:40 +02:00
Ricardo Wurmus 2d47cee25b
gnu: Do not propagate inputs in haskell.scm.
* gnu/packages/haskell.scm
(ghc-streaming-commons)[propagated-inputs]: Move ghc-random...
[inputs]: ...to here; remove ghc-async, add ghc-directory, add
ghc-transformers; move ghc-quickcheck, ghc-hspec...
[native-inputs]: ...to here; add hspec-discover.

(ghc-test-framework)[propagated-inputs]: Move all from here...
[inputs]: ...to here; move ghc-hunit and ghc-quickcheck...
[native-inputs]: ...to here.

(ghc-attoparsec)[propagated-inputs]: Move ghc-scientific...
[inputs]: ...to here; move ghc-quickcheck, ghc-quickcheck-unicode,
ghc-test-framework, ghc-test-framework-quickcheck2, ghc-vector...
[native-inputs]: ...to here.

(ghc-zip-archive)[propagated-inputs]: Move all inputs from here...
[inputs]: ...to here; move ghc-hunit from here...
[native-inputs]: ...to here.

(ghc-network-uri)[inputs]: Add ghc-parsec; move ghc-hunit from here...
[native-inputs]: ...to here.
[propagated-inputs]: Remove.

(ghc-wai)[propagated-inputs]: Move all inputs from here...
[inputs]: ...to here; move ghc-quickcheck, ghc-hunit, and ghc-hspec from
here...
[native-inputs]: ...to here.  Add hspec-discover.

(ghc-wai-extra)[propagated-inputs]: Remove ghc-hspec and ghc-hunit; move
all other inputs from here...
[inputs]: ...to here.
[native-inputs]: Add hspec-discover, ghc-hspec, and ghc-hunit.

(ghc-resourcet, ghc-xss-sanitize, ghc-parsec, ghc-vector, ghc-http,
ghc-base-compat, ghc-base-orphans, ghc-word8)[inputs]: Move all inputs
from here...
[native-inputs]: ...to here.

(ghc-haddock-library, ghc-hspec-contrib, ghc-base-compat,
ghc-base-orphans, ghc-fast-logger, ghc-word8, ghc-aeson-qq,
ghc-logging-facade, ghc-mockery, ghc-yaml, ghc-hslua)[native-inputs]:
Add hspec-discover.

(ghc-fast-logger)[inputs]: Move ghc-hspec from here...
[native-inputs]: ...to here.

(ghc-data-default,
ghc-data-default-instances-base,
ghc-data-default-instances-containers,
ghc-data-default-instances-dlist,
ghc-haddock-api,
ghc-happy,
ghc-haskell-src-exts,
ghc-resourcet,
ghc-xss-sanitize,
ghc-sdl-mixer,
ghc-sdl-image,
ghc-glut,
ghc-gluraw,
ghc-opengl,
cpphs,
ghc-old-time,
ghc-data-default-instances-old-locale,
cabal-install,
ghc-x11,
ghc-x11-xft,
ghc-hashable,
ghc-test-framework-hunit,
ghc-test-framework,
ghc-tf-random,
ghc-transformers-base,
ghc-unix-time,
ghc-http-types,
ghc-iproute,
ghc-regex-base,
ghc-regex-posix,
ghc-regex-tdfa-rc,
ghc-parsers,
ghc-trifecta,
ghc-distributive,
ghc-comonad,
ghc-polyparse,
ghc-profunctors,
ghc-reducers,
ghc-xml,
ghc-exceptions,
ghc-temporary,
ghc-temporary-rc,
ghc-smallcheck,
ghc-tasty-ant-xml,
ghc-quickcheck-instances,
ghc-quickcheck,
ghc-case-insensitive,
ghc-chasingbottoms,
ghc-unordererd-containers,
ghc-uniplate,
ghc-ansi-wl-pprint,
ghc-parsec,
ghc-vector,
ghc-vector-binary-instances,
ghc-http,
ghc-hspec,
ghc-hspec-contrib,
ghc-hspec-core,
ghc-hspec-meta,
ghc-vault,
ghc-monad-control,
ghc-blaze-builder,
ghc-blaze-markup,
ghc-blaze-html,
ghc-async,
ghc-optparse-applicative,
ghc-charset,
ghc-void,
ghc-kan-extensions,
ghc-statevar,
ghc-lens,
ghc-cheapskate,
ghc-semigroupoids,
ghc-contrvariant,
ghc-semigroups,
ghc-free,
ghc-adjunctions,
ghc-fast-logger,
ghc-doctest,
ghc-lifted-base,
ghc-tasty-quickcheck,
ghc-tasty-golden,
ghc-tasty,
ghc-cookie,
ghc-scientific,
ghc-aeson,
ghc-wai-logger,
ghc-pandoc-types,
ghc-texmath,
ghc-regex-pcre-builtin,
ghc-highlighting-kate,
ghc-cmark,
ghc-enclosed-exceptions,
ghc-th-lift,
ghc-th-expand-syns,
ghc-th-reify-many,
ghc-th-orphans,
ghc-haskell-src-meta,
ghc-aeson-qq,
ghc-conduit,
ghc-mockery,
ghc-yaml,
ghc-filemanip,
ghc-juicypixels,
ghc-hslua,
ghc-mime-types,
ghc-http-client,
ghc-hourglass,
ghc-pem,
ghc-asn1-types,
ghc-asn1-encoding,
ghc-asn1-parse,
ghc-tasty-kat,
ghc-cryptonite,
ghc-x509,
ghc-x509-store,
ghc-x509-validation,
ghc-x509-system,
ghc-tls,
ghc-socks,
ghc-connection,
ghc-http-client-tls,
ghc-pandoc)[propagated-inputs]: Move inputs from here...
[inputs]: ...to here.
2016-10-02 17:31:39 +02:00
Ricardo Wurmus 88cf917b74
gnu: r-plotly: Update to 4.5.2.
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.2.
[propagated-inputs]: Remove r-plyr; remove r-viridis; add r-dplyr; add
r-lazyeval; add r-purrr; add r-tibble; add r-viridislite.
2016-10-02 17:31:39 +02:00
Ricardo Wurmus a3c6445be5
gnu: Add r-purrr.
* gnu/packages/statistics.scm (r-purrr): New variable.
2016-10-02 17:31:39 +02:00
Ricardo Wurmus c6ab73e8ff
gnu: Add r-viridislite.
* gnu/packages/statistics.scm (r-viridislite): New variable.
2016-10-02 17:31:36 +02:00
Mark H Weaver 6a703976f4
gnu: libotf: Fix source URI.
* gnu/packages/fontutils.scm (libotf)[source]: Fix suorce URI.
2016-10-02 10:49:22 -04:00
Ludovic Courtès e543c8a2c6
gnu: bash-minimal: Remove 'move-development-files' phase.
* gnu/packages/bash.scm (bash-minimal)[arguments]: Delete
'move-development-files' phase.
(static-bash)[arguments]: Remove deletion of 'move-development-files'
phase.
2016-10-02 15:16:21 +02:00
Ben Woodcroft 4bdc3df92d
gnu: vsearch: Update to 2.1.2.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.2.
2016-10-02 22:25:39 +10:00
Efraim Flashner 10bc741619
gnu: ffmpeg: Update to 3.1.4.
* gnu/packages/video.scm (ffmpeg): Update to 3.1.4.
2016-10-02 11:38:32 +03:00
Mark H Weaver 79992a3e6f
gnu: linux-libre: Update to 4.7.6.
* gnu/packages/linux.scm (linux-libre): Update to 4.7.6.
2016-10-01 18:22:43 -04:00
Mark H Weaver 2bfa61c034
gnu: linux-libre@4.4: Update to 4.4.23.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.23.
2016-10-01 18:20:28 -04:00
Ricardo Wurmus 09a86196e9
gnu: guitarix: Update to 0.35.1.
* gnu/packages/audio.scm (guitarix): Update to 0.35.1.
2016-10-01 22:31:10 +02:00
Ricardo Wurmus 89fa2219a7
gnu: eigen: Update to 3.2.9.
* gnu/packages/algebra.scm (eigen): Update to 3.2.9.
2016-10-01 21:36:36 +02:00
Ricardo Wurmus d70f5139da
gnu: julia: Update to 0.5.0.
* gnu/packages/julia.scm (libuv-julia): Update to commit
8d5131b6c1595920dd30644cd1435b4f344b46c8.
(libunwind-for-julia): New variable.
(julia): Update to 0.5.0.
[arguments]: Disable stripping of binaries; modify "prepare-deps" phase;
add "fix-llvm-flag" phase; add "set-home" phase; adjust
"hardcode-soname-map" phase; remove fix for "double-conversion" from
"fix-include-and-link-paths" phase; enable "repl" and "replcompletions"
tests; disable "backtrace", "compile", "replutil", and "cmdlineargs"
tests; remove USE_SYSTEM_RMATH flag; remove USE_SYSTEM_GRISU flag.
[inputs]: Replace "llvm-3.5" with "llvm"; replace "libunwind" with
"libunwind-for-julia"; remove "double-conversion"; remove "rmath-julia";
update "suitesparse" origin; replace "virtualenv" origin with
"python2-virtualenv".
[native-inputs]: Add "openssl".
2016-10-01 21:36:36 +02:00
Ricardo Wurmus 9b72ce60fb
gnu: utf8proc: Update to 2.0.2.
* gnu/packages/textutils.scm (utf8proc): Update to 2.0.2.
2016-10-01 21:36:35 +02:00
Leo Famulari 917de2511b
gnu: gd: Fix CVE-2016-7568.
* gnu/packages/patches/gd-CVE-2016-7568.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
2016-10-01 12:27:37 -04:00
Ludovic Courtès 5bde29685b
gnu: perl: Make builds reproducible again.
* gnu/packages/patches/perl-reproducible-build-date.patch: Add hunks to
set 'myuname', 'cf_time', and 'cf_by' in 'Configure'.
2016-10-01 15:20:08 +02:00
Ben Woodcroft 156c0810e9
gnu: perl: Enable threading support.
* gnu/packages/perl.scm (perl)[arguments]: Configure with '-Dusethreads'.
* gnu/packages/commencement.scm (perl-boot0)[arguments]: Omit inherited
'-Dusethreads' flag during configure.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-10-01 14:34:33 +02:00
Ben Woodcroft 56ee1d2015
gnu: perl: Use configure-flags.
* gnu/packages/perl.scm (perl)[arguments]: Use configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-01 14:34:31 +02:00
Ludovic Courtès 8d29bfa9fc
gnu: bash-minimal: Disable loadable module support.
* gnu/packages/bash.scm (bash-minimal)[arguments]: Add
'ac_cv_func_dlopen=no' to #:configure-flags.
2016-10-01 12:15:02 +02:00
Ludovic Courtès 712b62d8f7
gnu: make-boot0: Use 'install-file'.
* gnu/packages/commencement.scm (gnu-make-boot0)[arguments]: Use
'install-file' in 'install' phase instead of 'copy-file' etc.
2016-10-01 11:55:09 +02:00
Ludovic Courtès 8e5e8724d2
gnu: make-boot0: Use 'modify-phases'.
* gnu/packages/commencement.scm (gnu-make-boot0)[arguments]: Use
'modify-phases'.
2016-10-01 11:55:09 +02:00
John Darrington 43f7af428e
gnu: rpcbind-configuration: Rename pkg to nfs-utils
* gnu/services/nfs.scm (<rpcbind-configuration>): "pkg" --> "nfs-utils"
2016-10-01 09:26:07 +02:00
Ivan Vilata i Balaguer 37356e0bf8
gnu: Add quickswitch-i3.
* gnu/packages/wm.scm (quickswitch-i3): New variable.
* gnu/packages/patches/quickswitch-fix-dmenu-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-01 10:56:11 +08:00
Ivan Vilata i Balaguer c165591d47
gnu: Add python-i3-py.
* gnu/packages/wm.scm (python-i3-py, python2-i3-py): New variables.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-01 10:44:44 +08:00
ng0 f1b61e26ae
gnu: Add emacs-rudel.
* gnu/packages/emacs.scm (emacs-rudel): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-10-01 10:22:31 +08:00
宋文武 df0e8a239b
gnu: shroud: Wrap 'shroud' with 'GUILE_LOAD_COMPILED_PATH'.
* gnu/packages/password-utils.scm (shroud)[arguments]: New field.
2016-10-01 08:50:48 +08:00
Leo Famulari ebb9b9a60c
gnu: tmux: Update to 2.3.
* gnu/packages/tmux.scm (tmux): Update to 2.3.
2016-09-30 19:49:08 -04:00
Ludovic Courtès c573f5a5a5
gnu: bash: Update to 4.4.
* gnu/packages/bash.scm (%patch-series-4.3): Remove.
(%patch-series-4.4): New variable.
(bash)[source]: Update to 4.4.
[native-inputs]: Remove.
[arguments]: Remove (ice-9 regex) modules; add (srfi srfi-26).
Inline 'install-sh-symlink' phase.  Remove 'install-headers' phase.  Add
'move-development-files' phase.
[native-search-paths]: New field.
(static-bash)[outputs]: New field.
[arguments]: Delete 'move-development-files' phase.
* gnu/packages/commencement.scm (static-bash-for-glibc)
(bash-final): Remove 'native-inputs'.
2016-10-01 00:00:03 +02:00
Ludovic Courtès a7a1cf2948
gnu: bash-static: Use 'modify-phases'.
* gnu/packages/bash.scm (static-bash)[arguments]: Use 'modify-phases'.
2016-10-01 00:00:02 +02:00
Ludovic Courtès 0c64d8564f
gnu: readline: Update to 7.0.
* gnu/packages/readline.scm (readline): Update to 7.0.
2016-10-01 00:00:02 +02:00
Ludovic Courtès 42d1e525bc
gnu: texinfo: Update to 6.3.
* gnu/packages/texinfo.scm (texinfo): Update to 6.3.
(texinfo-6.3): Remove.
2016-09-30 12:06:46 +02:00
Ludovic Courtès 79355ae3e8
Merge branch 'master' into core-updates 2016-09-30 12:05:27 +02:00
Leo Famulari bddf22b99e
gnu: libreoffice: Update to 5.1.5.2.
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.5.2.
2016-09-30 01:17:24 -04:00
Danny Milosavljevic cfb7e269e9
gnu: xonsh: Remove bundled PLY.
* gnu/packages/shells.scm (xonsh)[source]: Add snippet to remove bundled
python-ply.
[inputs]: Add python-ply.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-29 17:13:05 -04:00
Julien Lepiller 86d8f6d3ef
services: Add 'openssh-service'.
* gnu/packages/ssh.scm (openssh)[arguments]: Set sysconfdir to /etc/ssh.
* gnu/services/ssh.scm (<openssh-configuration>): New record type.
(%openssh-accounts): New variable.
(openssh-activation, openssh-config-file, openssh-shepherd-service)
(openssh-service): New procedures.
(openssh-service-type): New variable.
* doc/guix.texi (Networking Services): Document 'openssh-services'.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 23:11:48 +02:00
Arun Isaac 01c5c21a67
gnu: emacs: Build with m17n support.
* gnu/packages/emacs.scm (emacs): Build with m17n support.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:33 +02:00
Arun Isaac a80b60f484
gnu: Add m17n-lib.
* gnu/packages/emacs.scm (m17n-lib): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:33 +02:00
Arun Isaac 154c71e003
gnu: Add m17n-db.
* gnu/packages/emacs.scm (m17n-db): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:32 +02:00
Leo Famulari 0da1b7062a
gnu: c-ares: Update to 1.12.0 [fixes CVE-2016-5180].
* gnu/packages/adns.scm (c-ares): Update to 1.12.0.
[source]: Use HTTPS URL.
[home-page]: Use HTTPS URL.
2016-09-29 11:18:52 -04:00
David Craven b9f7895d39
Revert "gnu: %default-extra-linux-options: Remove redundant options."
Options aren't redundant and are required for building the initrd.

This reverts commit 50dbc03647.
2016-09-29 12:59:37 +02:00
Ludovic Courtès d06ce0466f
gnu: dbus-c++: License has "or later" clause.
* gnu/packages/glib.scm (dbus-c++)[license]: Change to LGPL2.1+.
2016-09-29 09:01:22 +02:00
Ludovic Courtès 39d6b9c99f
gnu: linux-pam@1.2: Remove erroneous 'name' field.
* gnu/packages/linux.scm (linux-pam-1.2)[name]: Remove.
2016-09-28 23:03:00 +02:00
Rene Saavedra 411264c250
gnu: linux-pam: Allow compilation on GNU/Hurd.
* gnu/packages/patches/linux-pam-no-setfsuid.patch: New file.
* gnu/packages/linux.scm (linux-pam)[source]: Use it.
(linux-pam-1.2)[source]: Likewise.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 23:01:49 +02:00
Ludovic Courtès 789f09a073
gnu: binutils: Work around Bash 4.2 bug.
Fixes a 'binutils-cross-boot0' build failure on mips64el.

Reported at
<https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01083.html>.

* gnu/packages/patches/binutils-mips-bash-bug.patch: New file.
* gnu/packages/base.scm (binutils)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-28 22:44:38 +02:00
Ricardo Wurmus 2320e76b82
gnu: sra-tools: Fix build on i686.
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Pass
"VDB_LIBDIR" in make-flags; dynamically link libmagic.
2016-09-28 22:30:41 +02:00
Efraim Flashner 37042a0fb4
gnu: tilda: Update to 1.3.3.
* gnu/packages/terminals.scm (tilda): Update to 1.3.3.
2016-09-28 21:38:38 +03:00
Stefan Reichoer 1d51585573
gnu: Add xonsh.
* gnu/packages/shells.scm (xonsh): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-28 13:42:06 -04:00
Leo Famulari b2fe918302
gnu: attic: Superseded by borg.
* gnu/packages/backup.scm (attic)[properties]: New field.
2016-09-28 13:07:06 -04:00
Taylan Ulrich Bayırlı/Kammer 415ee287fa
gnu: nestopia-ue: Update to version 1.47. 2016-09-28 17:00:35 +02:00
Taylan Ulrich Bayırlı/Kammer dac65f90b6
gnu: higan: Update to version 101.
* gnu/packages/games.scm (higan): Update to version 101.
2016-09-28 17:00:12 +02:00
Alex Kost 9e01589469
gnu: gettext: Install Emacs tools.
Fixes <http://bugs.gnu.org/24442>.
Reported by Ivan Vilata i Balaguer <ivan@selidor.net>.

* gnu/packages/gettext.scm (gnu-gettext)[native-inputs]: Add 'emacs'.
[arguments]: Add 'add-emacs-autoloads' phase.
2016-09-28 17:54:50 +03:00
Alex Kost b94a6ca074
gnu: Add and use gettext-minimal.
* gnu/packages/gettext.scm (gnu-gettext): Rename to...
(gettext-minimal): ... this.  Adjust synopsis and description.
(gnu-gettext): Inherit from it.
(po4a): Use 'gettext-minimal' instead of 'gnu-gettext'.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/apl.scm: Likewise.
* gnu/packages/attr.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/commencement.scm: Likewise.
* gnu/packages/crypto.scm: Likewise.
* gnu/packages/databases.scm: Likewise.
* gnu/packages/disk.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/education.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/enlightenment.scm: Likewise.
* gnu/packages/fcitx.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gkrellm.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/ibus.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/iso-codes.scm: Likewise.
* gnu/packages/kde-frameworks.scm: Likewise.
* gnu/packages/kodi.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/man.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mono.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/nano.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/sawfish.scm: Likewise.
* gnu/packages/statistics.scm: Likewise.
* gnu/packages/terminals.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/webkit.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wine.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
2016-09-28 17:54:50 +03:00
Thomas Danckaert b411517a19
gnu: git: Add input perl-term-readkey for 'git-svn'.
* gnu/packages/version-control.scm (git)[inputs]: Add perl-term-readkeys.
[arguments]: Add perl-term-readkeys to the PERL5LIB of `git-svn'.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-09-28 21:23:47 +08:00
David Craven 7a0630035c
gnu: linux-libre-beagle-bone-black: Remove kernel variant.
linux-libre-beagle-bone-black is misslabeled. This kernel variant is
for the original beagle board.

* gnu/packages/linux.scm (linux-libre-beagle-bone-black): Remove.
2016-09-28 12:40:12 +02:00