Commit Graph

32215 Commits

Author SHA1 Message Date
Paul Garlick 72f95783f1
gnu: petsc-openmpi: Ensure compatibility of SCOTCH dependency.
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Replace pt-scotch
with pt-scotch32 in order to prevent 'incompatible pointer' warnings
being generated in the 'build' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-10 00:28:11 +01:00
Ludovic Courtès 7e4bc21509
services: guix: Run 'guix-daemon' in UTF-8 locale.
Fixes <https://bugs.gnu.org/32942>.
Reported by Julien Lepiller <julien@lepiller.eu>.

* gnu/services/base.scm (guix-shepherd-service) <start>: In
 #:environment-variables, add "GUIX_LOCPATH" and "LC_ALL".
2018-12-10 00:28:11 +01:00
Marius Bakke 1460e77abf
gnu: msmtp: Update to 1.8.1.
* gnu/packages/mail.scm (msmtp): Update to 1.8.1.
2018-12-10 00:12:18 +01:00
Marius Bakke 2e265d19d1
gnu: git: Update to 2.20.0.
* gnu/packages/version-control.scm (git): Update to 2.20.0.
2018-12-10 00:12:18 +01:00
Maxim Cournoyer 88c7cf8499
gnu: emacs-elpy: Update to 1.27.0.
* gnu/packages/emacs.scm (emacs-elpy): Update to 1.27.0.
2018-12-09 16:18:19 -05:00
Maxim Cournoyer 584d5556d4
gnu: python-jedi: Update to 0.13.1 and disable the tests.
Jedi test suite fails when run with Python 3.7.

* gnu/packages/python.scm (python-jedi): Update to 0.13.1
[tests?] Disable.
[phases] Add condition check for the tests? argument to run the tests.
2018-12-09 16:18:18 -05:00
Pierre Neidhardt 505a385498
gnu: Add go-ipfs.
* gnu/packages/ipfs.scm (go-ipfs): New variable.
2018-12-09 18:21:10 +01:00
Efraim Flashner 8d3f604d94
gnu: syslinux: Limit the architectures supported.
* gnu/packages/bootloaders.scm (syslinux)[supported-systems}: New field.
2018-12-09 15:43:43 +02:00
Efraim Flashner ba8c08788f
gnu: mtools: Update to 4.0.22.
* gnu/packages/mtools.scm (mtools): Update to 4.0.22.
2018-12-09 15:43:40 +02:00
Ricardo Wurmus d7e2465242
gnu: sorcer: Always return #T from build phases.
* gnu/packages/music.scm (sorcer)[arguments]: Use INVOKE.
2018-12-09 13:54:56 +01:00
Gábor Boskovits accb5c3100
gnu: openjdk: Make idlj respect SOURCE_DATE_EPOCH.
* gnu/packages/patches/openjdk-10-idlj-reproducibility.patch: New file.
* gnu/packages/java.scm (openjdk10)[source]: Use it.
* gnu/locale.mk (dist_patch_DATA): Register it.
2018-12-09 12:55:36 +01:00
Mark H Weaver 99c39c28f9
gnu: linux-libre: Update to 4.19.8.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.8.
(%linux-libre-hash): Update hash.
2018-12-09 03:16:20 -05:00
Mark H Weaver 80606f7737
gnu: linux-libre@4.14: Update to 4.14.87.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.87.
(%linux-libre-4.14-hash): Update hash.
2018-12-09 03:16:18 -05:00
Mark H Weaver bff07c024e
gnu: linux-libre@4.9: Update to 4.9.144.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.144.
2018-12-09 03:16:15 -05:00
Leo Famulari 5d3f673db4
gnu: polkit: Fix CVE-2018-19788.
* gnu/packages/patches/polkit-CVE-2018-19788.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/polkit.scm (polkit)[source]: Use it.
2018-12-09 00:21:09 -05:00
宋文武 1f1d6af714
gnu: Add easyrpg-player.
* gnu/packages/easyrpg.scm (easyrpg-player): New variable.
2018-12-09 09:17:02 +08:00
宋文武 b779dbac72
gnu: Add liblcf.
* gnu/packages/easyrpg.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-12-09 09:11:13 +08:00
Danny Milosavljevic b05399dffc
gnu: supercollider: Update to 3.10.0.
* gnu/packages/audio.scm (supercollider): Update to 3.10.0.
[arguments]<#:phases>[disable-broken-tests]: Modify.
2018-12-09 01:47:46 +01:00
Kei Kebreau 5a8b00f26b
gnu: gcl: Update snapshot.
* gnu/packages/lisp.scm (gcl): Update to 2.6.12-2.d3335e2.
2018-12-08 19:38:46 -05:00
Marius Bakke cec0c4e29c
gnu: libgphoto2: Update to 2.5.21.
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.21.
2018-12-08 23:06:46 +01:00
Ricardo Wurmus 0fd9671bcc
gnu: patchage: Fix build.
Fixes <https://bugs.gnu.org/33677>.

* gnu/packages/audio.scm (patchage)[arguments]: Use Python 2.
2018-12-08 22:55:48 +01:00
Ricardo Wurmus cbe23db2d7
gnu: qtractor: Update to 0.9.3.
* gnu/packages/music.scm (qtractor): Update to 0.9.3.
2018-12-08 22:54:15 +01:00
Ricardo Wurmus d871e29ada
gnu: supercollider: Fix build.
Fixes <https://bugs.gnu.org/33674>.

* gnu/packages/audio.scm (supercollider)[arguments]: Add phase to fix build
with Boost 1.68.
[inputs]: Replace boost with boost-cxx14.
2018-12-08 22:52:28 +01:00
Ricardo Wurmus 5763243c4f
gnu: qsynth: Update to 0.5.4.
* gnu/packages/audio.scm (qsynth): Update to 0.5.4.
2018-12-08 22:48:13 +01:00
Efraim Flashner b52bcb24c6
gnu: quassel: Patch reference to inxi.
* gnu/packages/irc.scm (quassel)[arguments]: Patch the reference to
'inxi' in the source.
[inputs]: Add inxi-minimal.
2018-12-08 23:08:04 +02:00
Efraim Flashner 4ad62876cb
gnu: quassel: Update to 0.13.0.
* gnu/packages/irc.scm (quassel): Update to 0.13.0.
[arguments]: Update configure flags.
[inputs]: Add qtmultimedia.
2018-12-08 22:50:17 +02:00
Marius Bakke 08861d259b
gnu: python-pyaml: Update to 18.11.0.
* gnu/packages/python.scm (python-pyaml): Update to 18.11.0.
2018-12-08 19:37:47 +01:00
Marius Bakke 8a831c6f06
gnu: Remove more GCC ICE workarounds.
These were fixed with <https://bugs.gnu.org/31708>.

* gnu/packages/glib.scm (python-pygobject, python2-pygobject)[native-inputs]:
Remove GCC-7.
* gnu/packages/gnome.scm (gjs)[native-inputs]: Likewise.
[arguments]: Remove related phase.
2018-12-08 19:37:47 +01:00
Marius Bakke 6fac106491
gnu: feh: Update to 3.1.1.
* gnu/packages/image-viewers.scm (feh): Update to 3.1.1.
2018-12-08 19:37:47 +01:00
Marius Bakke 7570ec5aa9
gnu: GCC@7: Update to 7.4.0.
* gnu/packages/gcc.scm (gcc-7): Update to 7.4.0.
[source](patches): Drop 'gcc-libsanitizer-ustat.patch'.
* gnu/packages/storage.scm (ceph)[inputs]: Change from BOOST to BOOST-CXX14,
as GCC 7.4.0 triggers <https://bugs.gnu.org/33605>.
2018-12-08 19:37:47 +01:00
Marius Bakke 8d65ae44ac
gnu: GCC@6: Update to 6.5.0.
* gnu/packages/patches/gcc-libsanitizer-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gcc.scm (gcc-6): Update to 6.5.0.
[source](patches): Drop obsolete patches.
[source](snippet): Remove.
2018-12-08 19:37:47 +01:00
Marius Bakke 91206dffb9
gnu: elogind: Update to 239.3.
* gnu/packages/freedesktop.scm (elogind): Update to 239.3.
2018-12-08 19:37:47 +01:00
Kei Kebreau e0ae7e7374
gnu: Rename "qtoctave" to "octave".
* gnu/packages/maths.scm (qtoctave): Define in terms of 'deprectated-package'.
(octave): New variable, formerly known as "qtoctave".
2018-12-08 13:18:24 -05:00
Kei Kebreau 5537603fbf
gnu: Rename "octave" to "octave-cli".
* gnu/packages/maths.scm (octave): Rename to...
(octave-cli): ...this.
[name]: Change to "octave-cli".
(qtoctave): Inherit from octave-cli.
(flann)[inputs]: Adjust accordingly.
* gnu/packages/engineering.scm (qucs)[inputs]: Likewise.
(qucs-s)[inputs]: Likewise.
* gnu/packages/machine-learning.scm (shogun)[inputs]: Likewise.
2018-12-08 13:17:31 -05:00
Brendan Tildesley ec60c3a581
gnu: calibre: Update to 3.35.0.
* gnu/packages/ebooks.scm: (calibre): Update to 3.35.0.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2018-12-08 15:55:54 +01:00
Ricardo Wurmus f9dcf79f47
gnu: ingen: Fix build.
Fixes <https://bugs.gnu.org/33667>.

* gnu/packages/music.scm (ingen)[arguments]: Use python-2.
2018-12-08 09:07:40 +01:00
Amar Singh 46c8cea27b
gnu: qjackctl: Update 0.5.5.
* gnu/packages/audio.scm (qjackctl): Update to 0.5.5.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-12-08 12:03:09 +08:00
Leo Famulari b9103c827c
gnu: Add a C++14 variant of Boost for packages that need it.
Fixes <https://bugs.gnu.org/33605> and <https://bugs.gnu.org/33610>.

* gnu/packages/boost.scm (boost-cxx14): New variable.
* gnu/packages/compression.scm (innoextract)[inputs]: Use it.
* gnu/packages/mpd.scm (ncmpcpp)[inputs]: Use it.
2018-12-07 19:42:59 -05:00
Ricardo Wurmus 23a1f738b1
gnu: guix: Update to 6ddc63e599.
This fixes a problem introduced with commit
6eac835f17.  Reported on the #guix IRC channel
by tune.

* gnu/packages/package-management.scm (guix): Update to 6ddc63e599.
2018-12-07 15:37:19 +01:00
Ludovic Courtès 6eac835f17
maint: update-guix-package: Really register GC roots.
Previously we'd pass a relative file name to 'add-indirect-root', which
the daemon would interpret as relative to "/".  Consequently, checkouts
were not protected from GC.

* build-aux/update-guix-package.scm (main): Pass an absolute file name
to 'add-indirect-root'.
2018-12-07 15:14:12 +01:00
Diego Nicola Barbato 814652b41f
gnu: emacs-exwm: Update to 0.21.
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.21.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-12-07 18:30:39 +05:30
Ricardo Wurmus 705ea5bff6
gnu: Add r-fmsb.
* gnu/packages/cran.scm (r-fmsb): New variable.
2018-12-07 13:44:16 +01:00
Ludovic Courtès 5118e26f83
gnu: guix-daemon: Add dependency on Guile-JSON.
Fixes a bug introduced in 6776af04d4,
where the configure phase of 'guix-daemon' would abort due to the lack
of Guile-JSON.

* gnu/packages/package-management.scm (guix-daemon)[inputs]: Add
GUILE-JSON.
2018-12-07 00:06:51 +01:00
Ludovic Courtès 3933905c5f
Merge branch 'version-0.16.0' 2018-12-07 00:00:41 +01:00
Mark H Weaver 69f867b18f
gnu: linux-libre: Update to 4.19.7.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.7.
(%linux-libre-hash): Update hash.
2018-12-06 17:17:23 -05:00
Mark H Weaver 8b041fd21d
gnu: linux-libre@4.14: Update to 4.14.86.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.86.
(%linux-libre-4.14-hash): Update hash.
2018-12-06 17:16:27 -05:00
Mark H Weaver 1ecd6624ab
gnu: linux-libre@4.9: Update to 4.9.143.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.143.
2018-12-06 17:15:37 -05:00
Leo Famulari e6c28113e6
gnu: QEMU: Fix CVE-2018-16847 and CVE-2018-16867.
* gnu/packages/patches/qemu-CVE-2018-16847.patch,
gnu/packages/patches/qemu-CVE-2018-16867.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
2018-12-06 16:16:54 -05:00
Marius Bakke d553ee8082
tests: elogind: Adjust to elogind output change.
This is a follow-up to commit 4163f2467b.

* gnu/tests/desktop.scm (run-elogind-test): s|/dev/tty1/tty1.
2018-12-06 21:18:03 +01:00
Stefan Stefanović 4163f2467b
gnu: elogind: Update to 239.2.
* gnu/packages/freedesktop.scm (elogind): Update to 239.2.
[source](patches): Remove elogind-glibc-2.27.patch.
[source](snippet): Remove snippet.
[arguments]:
<#:tests?>: Enable tests.
<#:configure-flags>: Adjust build paths. Disable some tests.
<#:make-flags>: Remove argument.
<#:phases>[patch-locale-header]: Remove phase.
<#:phases>[clean-runpath]: Add phase.
<#:phases>[bootstrap]: Remove phase.
<#:phases>[fix-pkttyagent-path]: Add phase.
<#:phases>[fix-service-file]: Remove phase.
<#:phases>[add-libcap-to-search-path]: Remove phase.
<#:phases>[remove-uaccess-tag]: Remove phase.
<#:phases>[change-pid-file-path]: Add phase.
[build-system]: Switch to meson-build-system.
[native-inputs]: Sort native-inputs list.
Remove gperf package version constraint.
Remove: autoconf, automake, libtool, intltool.
Add: docbook-xml-4.2.
[inputs]: Remove: linux-libre-headers.
* gnu/packages/patches/elogind-glibc-2.27.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch file.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-12-06 20:22:41 +01:00
Stefan Stefanović 1f9b1d3d97
gnu: elogind: Use git-fetch.
* gnu/packages/freedesktop.scm (elogind)[source]: Use git-fetch.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-12-06 20:22:41 +01:00
Marius Bakke f19dfeeb26
gnu: efivar: Update to 37.
* gnu/packages/linux.scm (efivar): Update to 37.
2018-12-06 20:22:41 +01:00
Björn Höfling a18f8eaf61
gnu: arc-theme: Update to 20181022 and fix build.
* gnu/packages/gnome.scm (arc-theme)[version]: Update to 20181022.
[source]: Use new fork, change to git-fetch.
[inputs]: Remove and move gtk+ to native-inputs.
[native-inputs]: Add gtk+, glib:bin, gnome-shell, inkscape, optipng and sassc.
[home-page]: Adapt to new fork.
[license]: Fix to GPL 3 or later (gpl3+).

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2018-12-06 12:26:30 -05:00
Ricardo Wurmus 68464ea259
gnu: sassc: Fix build.
* gnu/packages/web.scm (sassc)[arguments]: Delete bootstrap phase; let
phase end on boolean.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2018-12-06 12:26:30 -05:00
Ludovic Courtès 178be030c0
vm: Add padding in the ISO image.
Fixes <https://bugs.gnu.org/33639>.
Thanks to Ricardo Wurmus and Thomas Schmitt for their suggestions!

* gnu/build/vm.scm (make-iso9660-image): Pass "-padding 10m" to
xorriso.
2018-12-06 17:22:24 +01:00
Marius Bakke 3d53869e30
gnu: ldb: Fix build on 32-bit systems.
* gnu/packages/samba.scm (ldb)[inputs]: Only add LMDB on 64-bit systems.
[arguments]: Make #:tests? conditional on LMDB availability.
2018-12-06 15:58:18 +01:00
Marius Bakke 4a21d1765d
gnu: nginx: Update to 1.14.2.
* gnu/packages/web.scm (nginx): Update to 1.14.2.
2018-12-06 15:58:18 +01:00
Christopher Baines 17cfb7aeff
gnu: ruby-json-pure: Fix build.
The version of test-unit used is greater than one of the gemspec files was
specifying. It was already being changed in two places, so this commit changes
the json-java.gemspec file as well.

* gnu/packages/ruby.scm (ruby-json-pure)[arguments]: Add new
fix-json-java.gemspec phase.
2018-12-05 21:21:24 +00:00
Christopher Baines 9c5f4b82bb
gnu: capnproto: Update to 0.7.0.
* gnu/packages/serialization.scm (capnproto): Update to 0.7.0.
[arguments]: Add new 'use-tmp-for-tempory-files phase.
2018-12-05 20:29:17 +00:00
Christopher Baines 9718265eec
gnu: mash: Use C++ 14.
I'm looking to upgrade capnproto, and mash fails to build with 0.7. Therefore,
tweak the compilation to allow it to build with 0.7. The package also builds
with the current version of capnproto. I got the idea of changing the c++
version from here [1].

1: https://github.com/marbl/Mash/issues/98

* gnu/packages/bioinformatics.scm (mash)[arguments]: Add new use-c++14 phase.
2018-12-05 20:29:12 +00:00
Leo Famulari 07315efc65
gnu: Syncthing: Update to 0.14.54.
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.54.
2018-12-05 15:23:55 -05:00
Rene e8338e9101
gnu: filezilla: Update to 3.39.0.
* gnu/packages/ftp.scm (filezilla): Update to 3.39.0.
2018-12-05 14:54:01 -05:00
Rene 07df80d195
gnu: libfilezilla: Update to 0.15.1.
* gnu/packages/ftp.scm (libfilezilla): Update to 0.15.1.
[inputs]: Add nettle.
2018-12-05 14:54:00 -05:00
Rene e920165979
gnu: balsa: Update to 2.5.6.
* gnu/packages/mail.scm (balsa): Update to 2.5.6.
[source]: Update URI.
2018-12-05 14:54:00 -05:00
Rene 7da4dbb3f2
gnu: pdfgrep: Update to 2.1.2.
* gnu/packages/pdf.scm (pdfgrep): Update to 2.1.2.
2018-12-05 14:54:00 -05:00
Leo Famulari 8f11439c36
gnu: eyeD3: Update to 0.8.8.
* gnu/packages/mp3.scm (eyed3): Update to 0.8.8.
2018-12-05 14:08:39 -05:00
Ludovic Courtès 676c3adc14
gnu: guix: Update to c845323. 2018-12-05 18:30:16 +01:00
Ludovic Courtès c845323d4b
gnu: guix: Update to 0.16.0. 2018-12-05 16:30:58 +01:00
Ludovic Courtès 970ebdae8c
services: guix-daemon: Fix authorization of multiple keys.
Previously, the 'unless (file-exists? "/etc/guix/acl")' guard would mean
that only the first key in the list would get registered since were were
generating one registration snippet per key.  This fixes that.

* gnu/services/base.scm (hydra-key-authorization): Change to be a
'for-each' loop iterating on #$KEYS.
2018-12-05 16:24:50 +01:00
Danny Milosavljevic aa00797877
gnu: beets: Make it compatible with Python 3.7.
* gnu/packages/music.scm (beets)[arguments]<#:phases>
[make-python3.7-compatible]: New phase.
2018-12-05 14:58:20 +01:00
Leo Famulari 3a2627b83c
gnu: khal: Disable another test.
Normally we shouldn't disable tests just because they fail.  However,
since the recent glibc update, it's not possible to keep using an old
khal, because khal requires locales to be set up properly.

* gnu/packages/calendar.scm (khal)[arguments]: Disable a failing test.
2018-12-05 00:12:56 -05:00
Pierre Langlois 4b193da3f9
gnu: sbcl-stumpwm: Drop ECL lisp support and rename to 'stumpwm'.
StumpWM version 1.0.0 was the last version to support lisps other than SBCL.
This patch renames the current version of Stumpwm to simply 'stumpwm' instead
of 'sbcl-stumpwm' since it's redundant, and removes the unmaintained
'ecl-stumpwm' package.

* gnu/packages/lisp.scm (sbcl-stumpwm): Deprecate in favor of 'stumpwm'.
[name]: Rename to 'stumpwm'.
[arguments]: Set '#:asd-system-name' to 'stumpwm'.
[properties]: Replace ecl-variant with cl-source-variant.
(ecl-stumpwm): Remove variable.
(cl-stumpwm): Replace 'sbcl-stumpwm' with 'stumpwm' and adapt.
(sbcl-stumpwm+slynk): Deprecate in favor of 'stumpwm+slynk'.
[name]: Rename to 'stumpwm-with-slynk'.
[inherit, inputs, arguments]: Replace 'sbcl-stumpwm' with 'stumpwm'.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2018-12-05 07:32:09 +03:00
Leo Famulari f224ea365b
gnu: go-github-com-client-golang-prometheus: Update to 0.9.1-0.7e9098b.
* gnu/packages/syncthing.scm (go-github-com-client-golang-prometheus):
Update to 0.9.1-0.7e9098b.
[arguments]: Skip the test suite.
2018-12-04 21:36:34 -05:00
Leo Famulari f2bf63d029
gnu: go-github-com-syncthing-notify: Update to 0.0.0-3.116c45b.
* gnu/packages/syncthing (go-github-com-syncthing-notify): Update to 0.0.0-3.116c45b.
2018-12-04 21:36:34 -05:00
Leo Famulari c7c0b3a98b
gnu: Syncthing: Update to 0.14.53.
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.53.
[source]: Use bundled libraries.
[inputs]: Remove field.
[arguments]: Simplify the 'build' phase.
2018-12-04 21:33:49 -05:00
Oleg Pykhalov 79a0eabd2a
gnu: Add python-xmltodict.
* gnu/packages/xml.scm (python-xmltodict): New variable.
2018-12-05 03:22:55 +03:00
Pierre Neidhardt 89ca445c29
gnu: sbcl-next: Update to 1.1.0.
* gnu/packages/web-browsers.scm (sbcl-next): Update to 1.1.0.
2018-12-05 00:38:58 +01:00
Pierre Neidhardt b96bd82133
gnu: next-gtk-webkit: Update to 1.1.0.
* gnu/packages/web-browsers.scm (next-gtk-webkit): Update to 1.1.0.
2018-12-05 00:38:44 +01:00
Ludovic Courtès c16c119d0a
gnu: quilt: Use shorter file names for patches.
We were reaching the 99-character limit of POSIX tar.

* gnu/packages/patches/quilt-compat-getopt-fix-option-with-nondigit-param.patch:
Rename to...
* gnu/packages/patches/quilt-getopt-nondigit-param.patch: ... this.
* gnu/packages/patches/quilt-compat-getopt-fix-second-separator.patch:
Rename to...
* gnu/packages/patches/quilt-getopt-second-separator.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/patchutils.scm (quilt)[source](patches): Likewise.
2018-12-05 00:08:28 +01:00
Christopher Baines fe5969656a
gnu: mongo-tools: Fix build.
I guess this broke when upgrading go. I did try upgrading to the later patch
and minor releases, but they had similar problems, so lets upgrade separately.

* gnu/packages/databases.scm (mongo-tools)[arguments]: Add patch-source phase.
2018-12-04 20:27:04 +00:00
Marius Bakke b4c684cdf3
gnu: mbedtls-apache: Update to 2.14.1 [fixes CVE-2018-19608].
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.14.1.
2018-12-04 21:13:31 +01:00
Marius Bakke 17074cae32
gnu: samba.scm: Sort module imports.
* gnu/packages/samba.scm (gnu): Sort imports.
2018-12-04 21:13:31 +01:00
Marius Bakke bdf161251a
gnu: ldb: Update to 1.4.3.
* gnu/packages/samba.scm (ldb): Update to 1.4.3.
[inputs]: Add LMDB.
2018-12-04 21:13:31 +01:00
Marius Bakke 44eff75ea3
gnu: samba: Update to 4.9.3.
* gnu/packages/samba.scm (samba): Update to 4.9.3.
[inputs]: Add GPGME, JANSSON, LIBARCHIVE and LMDB.
2018-12-04 21:13:31 +01:00
Marius Bakke 69d30ba280
gnu: re2: Update to 2018-12-01.
* gnu/packages/regex.scm (re2): Update to 2018-12-01.
2018-12-04 21:13:31 +01:00
Marius Bakke 56302fc1ec
gnu: re2: Download sources from git.
* gnu/packages/regex.scm (re2)[source]: Change to GIT-FETCH.
2018-12-04 21:13:31 +01:00
Marius Bakke db2db1296b
gnu: python-django: Update to 1.11.17.
* gnu/packages/django.scm (python-django): Update to 1.11.17.
2018-12-04 21:13:31 +01:00
Christopher Baines 69a64ecd66
gnu: go-gopkg.in-tomb.v2: Fix build.
Looks like this test isn't compiling with newer versions of go, so fix it to
get the package building again.

* gnu/packages/golang.scm (go-gopkg.in-tomb.v2)[arguments]: Add new
patch-source phase.
2018-12-04 19:53:04 +00:00
Ludovic Courtès 040ae18819
tests: Increase root partitions size to 1.2G.
The system closure has grown slightly above 1GiB so adjust accordingly.

* gnu/tests/install.scm (%simple-installation-script): Increase vdb2 size of
1.2G,
(%extlinux-gpt-installation-script); ditto
(%simple-installation-script-for-/dev/vda): ditto,
(%separate-store-installation-script): ditto for vdb3,
(%encrypted-root-installation-script): ditto.
2018-12-04 20:30:50 +01:00
Arun Isaac 30a1f6e214
gnu: Add apertium.
* gnu/packages/dictionaries.scm (apertium): New variable.
2018-12-04 23:08:45 +05:30
Arun Isaac d2e1d02253
gnu: Add lttoolbox.
* gnu/packages/dictionaries.scm (lttoolbox): New variable.
2018-12-04 23:08:45 +05:30
Arun Isaac 5790d163a4
gnu: dictionaries: Use license prefix.
* gnu/packages/dictionaries.scm: Import (guix licenses) with license:
prefix. Fix all license fields.
2018-12-04 23:08:33 +05:30
Ricardo Wurmus 42c3e00c20
gnu: pigx-rnaseq: Update to 0.0.5.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.5.
[inputs]: Replace snakemake-4 with snakemake.
2018-12-04 16:21:50 +01:00
Andreas Enge 4ebfe99a3f
gnu: pari-gp: Update to 2.11.1.
* gnu/packages/algebra.scm (pari-gp): Update to 2.11.1.
2018-12-04 13:38:16 +01:00
Tim Gesthuizen f5a15a86b0
gnu: emacs-irony-mode: Fetch source using git.
* gnu/packages/emacs.scm (emacs-irony-mode)[source]: Rewrite in terms of GIT-FETCH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-04 11:14:21 +01:00
Timo Eisenmann 3a1835128d
gnu: enlightenment: Use absolute path to 'edje_cc'.
* gnu/packages/enlightenment.scm (enlightenment)[arguments]: In
'set-system-actions', set absolute file name to 'edje_cc'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-04 11:06:00 +01:00
Paul Garlick dd6cb4a0af
gnu: fenics: Skip extra demo in 'check' phase.
* gnu/packages/simulation.scm (fenics)[arguments]: Add 'curl-curl'
demo to list of demos that require meshes supplied by git-lfs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-04 10:58:56 +01:00
Paul Garlick af5236739e
gnu: petsc-openmpi: Configure with support for HYPRE preconditioner.
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hypre-openmpi.
[arguments]: Add 'with-hypre=1' flag.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-04 10:58:50 +01:00
Ludovic Courtès 0bc02becca
Remove most references to hydra.gnu.org.
* Makefile.am (assert-binaries-available): Don't mention hydra.gnu.org
in comment.
* build-aux/check-available-binaries.scm: Likewise.
* build-aux/check-final-inputs-self-contained.scm: Likewise.
* doc/guix.texi (SUBSTITUTE-SERVER): New variable.
Use it throughout instead of "mirror.hydra.gnu.org".
* doc/contributing.texi (Submitting Patches): Likewise.
* gnu/services/base.scm (hydra-key-authorization)
(guix-activation): Remove mentions of "hydra.gnu.org" in comments and
messages.
* gnu/system/install.scm (%installation-services): Likewise.
* guix/scripts/size.scm (guix-size): Likewise.
2018-12-04 10:57:56 +01:00
Rutger Helling 1f51f0d975
gnu: dolphin-emu: Update to commit 2c57e70.
* gnu/packages/emulators.scm (dolphin-emu): Update to commit 2c57e70.
2018-12-04 10:03:55 +01:00