Commit Graph

33112 Commits

Author SHA1 Message Date
Ricardo Wurmus 8a05d17037
gnu: r-gmp: Update to 0.5-13.4.
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.4.
2019-03-07 23:52:39 +01:00
Ricardo Wurmus 7706a98cda
gnu: r-huge: Update to 1.3.0.
* gnu/packages/cran.scm (r-huge): Update to 1.3.0.
[propagated-inputs]: Add r-rcpp and r-rcppeigen; remove r-lattice.
2019-03-07 23:52:39 +01:00
Ricardo Wurmus f59cdeaf25
gnu: r-igraph: Update to 1.2.4.
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.
2019-03-07 23:52:39 +01:00
Ricardo Wurmus ed494a0acd
gnu: r-dplyr: Update to 0.8.0.1.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.0.1.
[native-inputs]: Move r-rcpp and r-bh from here...
[propagated-inputs]: ...to here; remove r-bindrcpp.
2019-03-07 23:52:39 +01:00
Ricardo Wurmus 6caf80fbaf
gnu: r-lme4: Update to 1.1-21.
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-21.
[native-inputs]: Move r-rcpp and r-rcppeigen from here...
[propagated-inputs]: ...to here; add r-boot.
2019-03-07 23:52:39 +01:00
Ricardo Wurmus 34a98f79d7
gnu: r-forcats: Update to 0.4.0.
* gnu/packages/statistics.scm (r-forcats): Update to 0.4.0.
[propagated-inputs]: Add r-ellipsis.
2019-03-07 23:52:39 +01:00
Ricardo Wurmus 6a0a2342dd
gnu: r-r6: Update to 2.4.0.
* gnu/packages/statistics.scm (r-r6): Update to 2.4.0.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus 4b16c00e9a
gnu: r-formatr: Update to 1.6.
* gnu/packages/statistics.scm (r-formatr): Update to 1.6.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus 1f7a76a0c1
gnu: r-evaluate: Update to 0.13.
* gnu/packages/statistics.scm (r-evaluate): Update to 0.13.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus 48a4b775b9
gnu: r-mgcv: Update to 1.8-27.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-27.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus 71fe7f9d21
gnu: r-stringi: Update to 1.3.1.
* gnu/packages/statistics.scm (r-stringi): Update to 1.3.1.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus 605fcf8a23
gnu: r-stringr: Update to 1.4.0.
* gnu/packages/statistics.scm (r-stringr): Update to 1.4.0.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus 17abcd521a
gnu: r-ranger: Update to 0.11.2.
* gnu/packages/statistics.scm (r-ranger): Update to 0.11.2.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus 9066534d4c
gnu: r-openssl: Update to 1.2.2.
* gnu/packages/statistics.scm (r-openssl): Update to 1.2.2.
2019-03-07 23:52:38 +01:00
Ricardo Wurmus a1d9387d82
gnu: r-catools: Update to 1.17.1.2.
* gnu/packages/statistics.scm (r-catools): Update to 1.17.1.2.
2019-03-07 23:52:37 +01:00
Ricardo Wurmus 4fadef3ba0
gnu: r-xml: Update to 3.98-1.19.
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.19.
2019-03-07 23:52:37 +01:00
Ricardo Wurmus bc7895e1cf
gnu: r-flexmix: Update to 2.3-15.
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-15.
2019-03-07 23:52:37 +01:00
Ricardo Wurmus 6be62a5a72
gnu: r-irlba: Update to 2.3.3.
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.3.
2019-03-07 23:52:37 +01:00
Ricardo Wurmus b22a20405a
gnu: r-registry: Update to 0.5-1.
* gnu/packages/statistics.scm (r-registry): Update to 0.5-1.
2019-03-07 23:52:37 +01:00
Ricardo Wurmus 3db71d065c
gnu: r-r-utils: Update to 2.8.0.
* gnu/packages/statistics.scm (r-r-utils): Update to 2.8.0.
2019-03-07 23:52:37 +01:00
Ricardo Wurmus 21886e730b
gnu: r-r-rsp: Update to 0.43.1.
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.43.1.
2019-03-07 23:52:37 +01:00
Ricardo Wurmus ed4100dc96
gnu: r-mvtnorm: Update to 1.0-10.
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-10.
2019-03-07 23:52:37 +01:00
Ricardo Wurmus ebd37b49f9
gnu: r-tidyr: Update to 0.8.3.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.3.
2019-03-07 23:52:37 +01:00
Ricardo Wurmus 84840deb95
gnu: r-purrr: Update to 0.3.1.
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.1.
2019-03-07 23:52:36 +01:00
Ricardo Wurmus b58220f599
gnu: r-pbapply: Update to 1.4-0.
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-0.
2019-03-07 23:52:36 +01:00
Ricardo Wurmus e51096b2ea
gnu: r-vgam: Update to 1.1-1.
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-1.
2019-03-07 23:52:36 +01:00
Ricardo Wurmus aeb11b7549
gnu: r-ggthemes: Update to 4.1.0.
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.1.0.
2019-03-07 23:52:36 +01:00
Ricardo Wurmus d235cf7268
gnu: r-shiny: Update to 1.2.0.
* gnu/packages/cran.scm (r-shiny): Update to 1.2.0.
[arguments]: Adjust processing of minified JavaScript.
2019-03-07 23:52:36 +01:00
Ricardo Wurmus 83ef38b038
gnu: r-epi: Update to 2.35.
* gnu/packages/cran.scm (r-epi): Update to 2.35.
2019-03-07 23:52:36 +01:00
Ricardo Wurmus 75cbc80037
gnu: r-network: Update to 1.14-377.
* gnu/packages/cran.scm (r-network): Update to 1.14-377.
[propagated-inputs]: Add r-magrittr and r-tibble.
2019-03-07 23:52:36 +01:00
Ricardo Wurmus fadc49c6e5
gnu: r-vegan: Update to 2.5-4.
* gnu/packages/cran.scm (r-vegan): Update to 2.5-4.
2019-03-07 23:52:36 +01:00
Ricardo Wurmus d1c2fd8eeb
gnu: r-future-apply: Update to 1.2.0.
* gnu/packages/cran.scm (r-future-apply): Update to 1.2.0.
2019-03-07 23:52:36 +01:00
Ricardo Wurmus 6e8b38d3e8
gnu: Add r-furrr.
* gnu/packages/cran.scm (r-furrr): New variable.
2019-03-07 23:52:35 +01:00
Ricardo Wurmus f0bff69873
gnu: Add r-survey.
* gnu/packages/cran.scm (r-survey): New variable.
2019-03-07 23:52:35 +01:00
Ricardo Wurmus dab3e92c94
gnu: Add r-magick.
* gnu/packages/cran.scm (r-magick): New variable.
2019-03-07 23:52:35 +01:00
Ricardo Wurmus 3f22a115bd
gnu: Add r-ellipsis.
* gnu/packages/cran.scm (r-ellipsis): New variable.
2019-03-07 23:52:35 +01:00
Pierre Neidhardt d748cb5f47
gnu: Add autorandr.
* gnu/packages/xdisorg.scm (autorandr): New variable.
2019-03-07 22:23:38 +01:00
Julien Lepiller 945723be97
gnu: php: Update to 7.3.3.
* gnu/packages/php.scm (php): Update to 7.3.3.
2019-03-07 21:18:30 +01:00
Efraim Flashner dcf4d01f30
gnu: libmicrohttpd: Enable parallel tests.
* gnu/packages/gnunet.scm (libmicrohttpd)[arguments]: Don't disable
parallel tests.
2019-03-07 22:00:53 +02:00
Efraim Flashner c4bfce994e
gnu: libmicrohttpd: Update to 0.9.63.
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.63.
[arguments]: Remove custom phase to add missing LDFLAGS.
2019-03-07 22:00:53 +02:00
Efraim Flashner 0ef54303f3
gnu: c-graph: Update to 2.0.1.
* gnu/packages/maths.scm (c-graph): Update to 2.0.1.
2019-03-07 22:00:52 +02:00
Pierre Neidhardt b60e9fb82f
gnu: fuseiso: Fix typo in description.
* gnu/packages/linux.scm (fuseiso)[description]: Fix typo.
2019-03-07 17:12:46 +01:00
Tobias Geerinckx-Rice 1e1142d8cb
gnu: Add nullmailer.
* gnu/packages/mail.scm (nullmailer): New public variable.
2019-03-07 15:39:46 +01:00
Ricardo Wurmus 3189fad217
gnu: neovim: Let build phase return #T.
* gnu/packages/vim.scm (neovim)[arguments]: Return #T from "patch-tic" phase.
2019-03-07 13:39:45 +01:00
Ricardo Wurmus 3b296475bf
gnu: cd-hit: Support longer sequences.
* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Pass MAX_SEQ to make
flags.
2019-03-07 13:38:01 +01:00
Ricardo Wurmus 237ee6f2b2
gnu: python2-fastlmm: Disable tests.
* gnu/packages/machine-learning.scm (python2-fastlmm)[arguments]: Disable
tests.
2019-03-07 13:37:58 +01:00
Rutger Helling 9fd6ad3e35
gnu: wireguard: Update to 0.0.20190227.
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20190227.
[arguments]: Disable tests.
2019-03-07 12:23:43 +01:00
Rutger Helling 9cb4bda222
gnu: nftables: Update to 0.9.0.
* gnu/packages/linux.scm (nftables): Update to 0.9.0.
[arguments]: Add "--disable-man-doc" configure flag.
2019-03-07 12:08:21 +01:00
Kei Kebreau ccf2446730
gnu: minetest: Update to 5.0.0.
* gnu/packages/games.scm (minetest-data, minetest): Update to 5.0.0.
2019-03-07 05:31:19 -05:00
Gábor Boskovits 0a10abf73e
gnu: neovim: Fix #34616.
This fixes a segmentation fault in neovim, where an error return value
is passed in as a pointer.

* gnu/packages/vim.scm (neovim)[arguments](phases): Add 'patch-tic phase.
2019-03-07 11:08:31 +01:00
Gábor Boskovits 2702aa9136
gnu: unibilium: Update to 2.0.0.
* gnu/packages/terminal.scm (unibilium): Update to 2.0.0.
[native-inputs]: Add perl.
2019-03-07 09:48:03 +01:00
Tobias Geerinckx-Rice abe6e670d3
gnu: sane-backends-minimal: Fix USB support.
* gnu/packages/scanner.scm (sane-backends-minimal)[inputs]: Replace
libusb-compat with libusb.
[arguments]: Disable tests that require USB access.
2019-03-07 02:13:26 +01:00
Mark H Weaver 274fa49100
gnu: linux-libre: Update to 5.0.
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.
(%linux-libre-hash): Update hash.
(%linux-libre-4.20-patches): Rename to ...
(%linux-libre-5.0-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Use %linux-libre-5.0-patches instead of %linux-libre-4.20-patches.
* gnu/packages/aux-files/linux-libre/4.20-arm.conf,
gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.20-i686.conf,
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/5.0-arm.conf,
gnu/packages/aux-files/linux-libre/5.0-arm64.conf,
gnu/packages/aux-files/linux-libre/5.0-i686.conf,
gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
2019-03-06 17:51:55 -05:00
Mark H Weaver 9870f3ec61
gnu: linux-libre@4.19: Update to 4.19.27.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.27.
(%linux-libre-4.19-hash): Update hash.
2019-03-06 17:51:12 -05:00
Mark H Weaver 1b1a6c028b
gnu: linux-libre@4.14: Update to 4.14.105.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.105.
(%linux-libre-4.14-hash): Update hash.
2019-03-06 17:50:21 -05:00
Mark H Weaver 7850fa891d
gnu: linux-libre@4.9: Update to 4.9.162.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.162.
2019-03-06 17:49:26 -05:00
Ricardo Wurmus fc240e7e05
gnu: synthv1: Update to 0.9.5.
* gnu/packages/music.scm (synthv1): Update to 0.9.5.
2019-03-06 22:26:07 +01:00
Ricardo Wurmus 6ef147bd1d
gnu: drumkv1: Update to 0.9.5.
* gnu/packages/music.scm (drumkv1): Update to 0.9.5.
2019-03-06 22:26:07 +01:00
Ricardo Wurmus cf6195906c
gnu: samplv1: Update to 0.9.5.
* gnu/packages/music.scm (samplv1): Update to 0.9.5.
2019-03-06 22:26:07 +01:00
Ricardo Wurmus 4b159add6f
gnu: padthv1: Update to 0.9.5.
* gnu/packages/music.scm (padthv1): Update to 0.9.5.
2019-03-06 22:26:07 +01:00
Ricardo Wurmus d935f69b11
gnu: yoshimi: Update to 1.5.10.2.
* gnu/packages/music.scm (yoshimi): Update to 1.5.10.2.
2019-03-06 22:26:06 +01:00
Vagrant Cascadian 01d8a2a3d9
gnu: electron-cash: Update to 3.3.6.
* gnu/packages/finance (electron-cash): Update to 3.3.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-06 16:06:26 -05:00
Vagrant Cascadian 307603dd88
gnu: electrum: Update to 3.3.4.
* gnu/packages/finance (electrum): Update to 3.3.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-06 16:06:26 -05:00
Vagrant Cascadian 11599cff1e
gnu: diffoscope: Update to 113.
* gnu/packages/package-management (diffoscope): Update to 113.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-06 22:05:07 +01:00
Ricardo Wurmus 61e265d294
gnu: Add multitime.
* gnu/packages/benchmark.scm (multitime): New variable.
2019-03-06 21:55:14 +01:00
Ricardo Wurmus 8035819f4c
gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): ...to here.
2019-03-06 21:43:33 +01:00
Ricardo Wurmus d56df35a25
gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here.
2019-03-06 21:42:39 +01:00
Ricardo Wurmus f8780e96ff
gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): ...to here.
2019-03-06 21:41:48 +01:00
Ricardo Wurmus 3a08940e1a
gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): ...to here.
2019-03-06 21:35:20 +01:00
Ricardo Wurmus 7bc5d1b0e1
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Move from here...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
...to here.
2019-03-06 21:33:17 +01:00
Ricardo Wurmus 13dabd6947
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
...to here.
2019-03-06 21:31:41 +01:00
Ricardo Wurmus 0c792ffbd1
gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here.
2019-03-06 21:30:30 +01:00
Ricardo Wurmus b7d93cf508
gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6): ...to here.
2019-03-06 21:29:20 +01:00
Ricardo Wurmus c3adc83054
gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to here.
2019-03-06 21:26:54 +01:00
Ricardo Wurmus 5acb9052cf
gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9): ...to here.
2019-03-06 21:25:18 +01:00
Ricardo Wurmus fe0b76e215
gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): ...to here.
2019-03-06 21:23:42 +01:00
Ricardo Wurmus 40a6505711
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
...to here.
2019-03-06 21:23:20 +01:00
Ricardo Wurmus 66e35ce63b
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): Move
from here...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): ...to
here.
2019-03-06 21:16:33 +01:00
Ricardo Wurmus bfb93b4889
gnu: r-geneplotter: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-geneplotter): Move from here...
* gnu/packages/bioconductor.scm (r-geneplotter): ...to here.
2019-03-06 21:13:38 +01:00
Ricardo Wurmus 9f8698ad1c
gnu: Add guile-stis-parser.
* gnu/packages/guile-xyz.scm (guile-stis-parser): New variable.
2019-03-06 21:07:49 +01:00
Ricardo Wurmus 3d13b448e5
gnu: r-copynumber: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-copynumber): Move from here...
* gnu/packages/bioconductor.scm (r-copynumber): ...to here.
2019-03-06 21:07:49 +01:00
Ricardo Wurmus 6aa896d82e
gnu: Update copyright headers.
This is a follow-up to commit 1fe9a36173.

* gnu/packages/bioconductor.scm: Update copyright header to account for moved
package.
2019-03-06 21:07:49 +01:00
Efraim Flashner d2b38df62e
gnu: font-gnu-unifont: Update to 12.0.01.
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 12.0.01.
2019-03-06 20:51:47 +02:00
Tobias Geerinckx-Rice 393b55d5c7
gnu: cabextract: Don't use NAME in source URI.
* gnu/packages/compression.scm (cabextract)[source]: Hard-code NAME.
2019-03-06 16:48:40 +01:00
Tobias Geerinckx-Rice bde093c23d
gnu: cabextract: Update to 1.9.1.
* gnu/packages/compression.scm (cabextract): Update to 1.9.1.
2019-03-06 16:48:39 +01:00
Tobias Geerinckx-Rice 8fadbc4bb3
gnu: lcov: Update to 1.14.
* gnu/packages/code.scm (lcov): Update to 1.14.
2019-03-06 16:48:39 +01:00
Marius Bakke 7016e62070
gnu: python-mako: Update home page.
* gnu/packages/python-xyz.scm (python-mako)[home-page]: Use HTTPS.
2019-03-06 16:30:48 +01:00
Marius Bakke dff79364cf
gnu: fuseiso: Fix typo.
* gnu/packages/linux.scm (fuseiso)[synopsis]: s/imsages/images.
2019-03-06 16:30:48 +01:00
Marius Bakke a9eeda20b4
gnu: valgrind: Add download mirror.
* gnu/packages/valgrind.scm (valgrind)[source](uri): Add mirror.
2019-03-06 16:30:48 +01:00
Ricardo Wurmus 38502a7d13
gnu: bismark: Update to 0.20.1.
* gnu/packages/bioinformatics.scm (bismark): Update to 0.20.1.
[source]: Remove obsolete snippet.
[arguments]: Add build phase "replace-plotly.js" and add requried modules;
adjust "install" phase.
[inputs]: Add perl-carp and perl-getopt-long.
[native-inputs]: Add plotly.js and uglify-js.
2019-03-06 16:26:23 +01:00
Pierre Neidhardt 1564e0fefa
gnu: Add fuseiso.
* gnu/packages/linux.scm (fuseiso): New variable.
2019-03-06 16:24:34 +01:00
Ricardo Wurmus cb66fb101f
gnu: Add r-scde.
* gnu/packages/bioinformatics.scm (r-scde): New variable.
2019-03-06 15:55:54 +01:00
Ricardo Wurmus afeb10a056
gnu: Add bowtie1.
* gnu/packages/bioinformatics.scm (bowtie1): New variable.
2019-03-06 15:32:45 +01:00
Kei Kebreau 5b8f892872
gnu: octave, octave-cli: Update to 5.1.0.
* gnu/packages/maths.scm (octave, octave-cli): Update to 5.1.0.
2019-03-06 09:17:33 -05:00
Kei Kebreau e366521a94
gnu: crawl, crawl-tiles: Update to 0.23.1.
* gnu/packages/games.scm (crawl, crawl-tiles): Update to 0.23.1.
[native-inputs]: Add python and python-pyyaml.
[arguments]: Add 'patch-python' phase, modify the 'check' phase and move the
'check' phase back after the 'build' phase.
2019-03-06 09:17:24 -05:00
Ricardo Wurmus 5bb674a0cd
gnu: perl-czplib: Fix installation directory.
* gnu/packages/perl.scm (perl-czplib)[arguments]: Fix installation directory.
2019-03-06 15:05:38 +01:00
Ricardo Wurmus 5531782d1c
gnu: Add guile-studio.
* gnu/packages/guile-xyz.scm (guile-studio): New variable.
2019-03-06 14:40:02 +01:00
Ricardo Wurmus 4fc9b5b1dd
gnu: Add genrich.
* gnu/packages/bioinformatics.scm (genrich): New variable.
2019-03-06 13:28:45 +01:00
Ricardo Wurmus 1fe9a36173
gnu: r-dnacopy: Remove duplicate definition.
Reported by Christopher Baines <mail@cbaines.net>.

* gnu/packages/bioinformatics.scm (r-dnacopy): Remove variable.
2019-03-06 10:39:28 +01:00
Ricardo Wurmus 3dad6087be
gnu: Add r-org-dr-eg-db.
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): New variable.
2019-03-06 10:29:25 +01:00
Ricardo Wurmus 43d6776ba4
gnu: java-eclipse-jdt-core: Update to 3.16.0.
* gnu/packages/java.scm (java-eclipse-jdt-core): Update to 3.16.0.
2019-03-06 10:10:23 +01:00
Ricardo Wurmus c8427a5e91
gnu: java-eclipse-core-resources: Update to 3.13.200.
* gnu/packages/java.scm (java-eclipse-core-resources): Update to 3.13.200.
2019-03-06 10:10:23 +01:00
Ricardo Wurmus 4fa9b6e657
gnu: java-eclipse-core-runtime: Update to 3.15.100.
* gnu/packages/java.scm (java-eclipse-core-runtime): Update to 3.15.100.
2019-03-06 10:10:23 +01:00
Ricardo Wurmus e40e3792e6
gnu: java-eclipse-equinox-common: Update to 3.10.200.
* gnu/packages/java.scm (java-eclipse-equinox-common): Update to 3.10.200.
2019-03-06 10:10:19 +01:00
Rutger Helling d9eada7917
gnu: shaderc: Update to 2018.0.
* gnu/packages/vulkan.scm (shaderc): Update to 2018.0.
2019-03-06 09:26:50 +01:00
Rutger Helling 264c803b82
gnu: spirv-tools: Update to 2019.1.
* gnu/packages/vulkan.scm (spirv-tools): Update to 2019.1.
[arguments]: Add 'fixgcc7 phase.
[native-inputs]: Add gcc-7.
2019-03-06 09:26:50 +01:00
Rutger Helling 9a1de5f0fa
gnu: spirv-headers: Update to commit 8bea0a2.
* gnu/packages/vulkan.scm (spirv-headers): Update to commit 8bea0a2.
2019-03-06 09:26:49 +01:00
Rutger Helling 3113ecfaec
gnu: glslang: Update to 7.11.3113.
* gnu/packages/vulkan.scm (glslang): Update to 7.11.3113.
2019-03-06 09:26:49 +01:00
Leo Famulari 3546e97f38
gnu: MPD: Update to 0.21.5.
* gnu/packages/mpd.scm (mpd): Update to 0.21.5.
2019-03-05 21:10:54 -05:00
Arne Babenhauserheide 84eb265eb8
gnu: FFmpeg: Build with AV1 support.
* gnu/packages/video.scm (ffmpeg)[inputs]: Add libaom.
[arguments]: Pass '--enable-libaom' to #:configure-flags.
(ffmpeg-3.4)[inputs, arguments]: Filter out libaom.
2019-03-05 18:29:20 -05:00
Arne Babenhauserheide a7afa45401
gnu: Add libaom.
* gnu/packages/video.scm (libaom): New variable.

Co-authored-by: Leo Famulari <leo@famulari.name>
2019-03-05 18:29:20 -05:00
Tobias Geerinckx-Rice dbfa3bb5d0
gnu: you-get: Update to 0.4.1256.
* gnu/packages/video.scm (you-get): Update to 0.4.1256.
2019-03-06 00:15:28 +01:00
Tobias Geerinckx-Rice fe67e51301
gnu: youtube-dl: Update to 2019.03.01.
* gnu/packages/video.scm (youtube-dl): Update to 2019.03.01.
2019-03-06 00:15:27 +01:00
Tobias Geerinckx-Rice 84bdd0ec06
gnu: plantuml: Update to 1.2019.2.
* gnu/packages/uml.scm (plantuml): Update to 1.2019.2.
2019-03-06 00:15:27 +01:00
Tobias Geerinckx-Rice 2830802043
gnu: xinit: Update to 1.4.1.
* gnu/packages/xorg.scm (xinit): Update to 1.4.1.
2019-03-06 00:15:27 +01:00
Tobias Geerinckx-Rice 2e625ef73a
gnu: lxc: Fix documentation directory.
* gnu/packages/virtualization.scm (lxc)[arguments]: Set ‘--docdir’ in #:configure-flags.
2019-03-06 00:15:26 +01:00
Tobias Geerinckx-Rice cc7058b20b
gnu: lxc: Update to 3.1.0.
* gnu/packages/virtualization.scm (lxc): Update to 3.1.0.
2019-03-06 00:15:26 +01:00
Leo Famulari 5f7c036cf6
gnu: dav1d: Update to 0.2.0.
* gnu/packages/video.scm (dav1d): Update to 0.2.0.
[source]: Add alternate URL.
2019-03-05 17:56:49 -05:00
Ludovic Courtès af85757915
gnu: singularity: Leave PATH unchanged.
Previously 'singularity help' & co. would all fail on Guix System
because Coreutils, grep, etc. were not found in $PATH.

* gnu/packages/linux.scm (singularity)[source](snippet): Remove "PATH"
setting from 'bin/singularity.in'.
2019-03-05 23:08:53 +01:00
Ludovic Courtès fbf26cbcf3
gnu: singularity: Patch 'Makefile.in' in a snippet.
* gnu/packages/linux.scm (singularity)[source](snippet, modules): New
fields.
[arguments]: Remove 'disable-install-hook' phase.
2019-03-05 23:08:53 +01:00
Ludovic Courtès 107b081ef7
gnu: wpa-supplicant: Add 'cpe-name' property.
* gnu/packages/admin.scm (wpa-supplicant-minimal)[properties]: New
field.
2019-03-05 23:08:53 +01:00
Leo Famulari f4319c6e28
gnu: Syncthing: Update to 1.1.0.
* gnu/packages/syncthing.scm (syncthing): Update to 1.1.0.
2019-03-05 14:42:49 -05:00
Efraim Flashner f862697b5c
gnu: emacs-no-x-toolkit: Fix configure flags.
* gnu/packages/emacs.scm (emacs-no-x-toolkit)[arguments]: Don't lose
custom configure flags.
2019-03-05 21:38:51 +02:00
Pierre Neidhardt 7e80767dc3
gnu: emacs-disk-usage: Update to 1.3.0.
* gnu/packages/emacs-xyz.scm (emacs-disk-usage): Update to 1.3.0.
2019-03-05 20:03:20 +01:00
Tobias Geerinckx-Rice 908a3f3614
gnu: thinkfan: Let the build system handle rcscripts/.
This moves them from /share/thinkfan to their conventional locations
in /etc and /lib; the former was an arbitrary Guixism anyway.

* gnu/packages/linux.scm (thinkfan)[arguments]:
Re-write 'install-rc-scripts' as 'create-init-scripts' and move it after
the 'unpack' phase.
2019-03-05 17:01:53 +01:00
Tobias Geerinckx-Rice 9a3d176ee1
gnu: thinkfan: Update to 1.0.2.
* gnu/packages/linux.scm (thinkfan): Update to 1.0.2.
[arguments]: Adjust source directory.
2019-03-05 17:01:53 +01:00
Tobias Geerinckx-Rice 9eb7cde0e8
gnu: iucode-tool: Update to 2.3.1.
* gnu/packages/linux.scm (iucode-tool): Update to 2.3.1.
2019-03-05 17:01:53 +01:00
Tobias Geerinckx-Rice 59ac0a2a59
gnu: f2fs-tools: Update to 1.12.0.
* gnu/packages/linux.scm (f2fs-tools): Update to 1.12.0.
2019-03-05 17:01:53 +01:00
Tobias Geerinckx-Rice 2d588f3c03
gnu: f2fs-tools: Don't use NAME in source URI.
* gnu/packages/linux.scm (f2fs-tools-1.7, f2fs-tools)[source]:
Hard-code NAME.
2019-03-05 17:01:52 +01:00
Tobias Geerinckx-Rice 9e6008b775
gnu: xfsprogs: Update to 4.20.0.
* gnu/packages/linux.scm (xfsprogs): Update to 4.20.0.
2019-03-05 17:01:52 +01:00
Tobias Geerinckx-Rice e569c7723d
gnu: libnftnl: Update to 1.1.2.
* gnu/packages/linux.scm (libnftnl): Update to 1.1.2.
2019-03-05 17:01:52 +01:00
Tobias Geerinckx-Rice 083639a553
gnu: genext2fs: Update to 1.4.1-4.
* gnu/packages/linux.scm (genext2fs): Update to 1.4.1-4.
[arguments]: Add 'apply-debian-patches' phase.
[native-inputs]: Add autoconf and automake.
2019-03-05 17:01:51 +01:00
Efraim Flashner f5e08f1793
gnu: wget2: Update to 1.99.1.
This fixes https://issues.guix.info/issue/34718.

* gnu/packages/wget.scm (wget2): Update to 1.99.1.
[arguments]: Add phase to skip network tests. Update custom 'bootstrap
phase to not require unnecessary binaries.
[inputs]: Remove doxygen, python. Move autoconf, automake, flex,
gettext-minimal, libtool ...
[native-inputs]: ... to here. Add python-2.
2019-03-05 17:46:46 +02:00
Ivan Petkov 1a3db0b22f
gnu: rust: Update to 1.31.1.
* gnu/patches/rust-1.30-gdb-llvm.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.29): ...this.
(rust-1.30): New variable.
(rust): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-05 13:43:09 +01:00
Rutger Helling ac5aad535c
gnu: scdoc: Update to 1.9.4.
* gnu/packages/man.scm (scdoc): Update to 1.9.4.
2019-03-05 11:49:06 +01:00
Pierre Neidhardt df747c8d68
gnu: Add mailcatcher.
* gnu/packages/ruby.scm (mailcatcher): New variable.
2019-03-05 11:25:21 +01:00
Pierre Neidhardt be6016db4b
gnu: Add ruby-skinny.
* gnu/packages/ruby.scm (ruby-skinny): New variable.
2019-03-05 11:22:34 +01:00
Pierre Neidhardt 6e87695ba4
gnu: Add ruby-thin.
* gnu/packages/ruby.scm (ruby-thin): New variable.
2019-03-05 11:22:34 +01:00
Pierre Neidhardt 3bb094e282
gnu: Add ruby-sinatra.
* gnu/packages/ruby.scm (ruby-sinatra): New variable.
2019-03-05 11:22:34 +01:00
Pierre Neidhardt acb9e3d8cc
gnu: Add ruby-mustermann.
* gnu/packages/ruby.scm (ruby-mustermann): New variable.
2019-03-05 11:22:28 +01:00
Pierre Neidhardt 3355e49cf8
gnu: ruby-rack-protection: Update to 2.0.5.
* gnu/packages/ruby.scm (ruby-rack-protection): Update to 2.0.5.
2019-03-05 10:06:05 +01:00
Brett Gilio 9c7226dfd5
gnu: python-language-server: Update to 0.24.0.
* gnu/packages/python-xyz.scm (python-language-server): Update to 0.24.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-04 22:37:02 -05:00
Tobias Geerinckx-Rice d22d246a25
gnu: btrfs-progs: Update to 4.20.2.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.20.2.
2019-03-05 00:05:14 +01:00
Tobias Geerinckx-Rice d23495fa69
gnu: folks: Update to 0.11.4.
* gnu/packages/gnome.scm (folks): Update to 0.11.4.
2019-03-05 00:05:14 +01:00
Tobias Geerinckx-Rice e5f4796e62
gnu: folks: Don't use NAME in source URI.
* gnu/packages/gnome.scm (folks)[source]: Hard-code NAME.
2019-03-05 00:05:13 +01:00
Tobias Geerinckx-Rice 8d6813f98e
gnu: virtualgl: Update to 2.6.1.
* gnu/packages/gl.scm (virtualgl): Update to 2.6.1.
2019-03-05 00:05:13 +01:00
Tobias Geerinckx-Rice 77593a444f
gnu: gegl: Update to 0.4.14.
* gnu/packages/gimp.scm (gegl): Update to 0.4.14.
2019-03-05 00:05:13 +01:00
Tobias Geerinckx-Rice bba5bb30dd
gnu: font-anonymous-pro: Use HTTPS home page.
* gnu/packages/fonts.scm (font-anonymous-pro)[source, home-page]: Use HTTPS.
2019-03-05 00:05:13 +01:00
Tobias Geerinckx-Rice 76498783ea
gnu: font-fira-code: Update to 1.206.
* gnu/packages/fonts.scm (font-fira-code): Update to 1.206.
2019-03-05 00:05:12 +01:00
Tobias Geerinckx-Rice 73c5c4820a
gnu: font-terminus: Update to 4.47.
* gnu/packages/fonts.scm (font-terminus): Update to 4.47.  Re-indent.
[native-inputs]: Replace perl with python.  Order alphabetically.
[arguments]: Remove #:configure-flags.
2019-03-05 00:05:12 +01:00