f8a5af4653
gnu: Add r-do-db.
...
* gnu/packages/bioconductor.scm (r-do-db): New variable.
2019-03-27 16:17:19 +01:00
af26c7ae70
gnu: Add r-fgsea.
...
* gnu/packages/bioconductor.scm (r-fgsea): New variable.
2019-03-27 16:17:19 +01:00
0d50d0df08
gnu: Add r-msigdbr.
...
* gnu/packages/cran.scm (r-msigdbr): New variable.
2019-03-27 16:17:19 +01:00
2d70460892
gnu: Add r-xkcd.
...
* gnu/packages/cran.scm (r-xkcd): New variable.
2019-03-27 16:17:19 +01:00
2331bf2a64
gnu: Add r-extrafont.
...
* gnu/packages/cran.scm (r-extrafont): New variable.
2019-03-27 16:17:18 +01:00
b6933ea634
gnu: Add r-extrafontdb.
...
* gnu/packages/cran.scm (r-extrafontdb): New variable.
2019-03-27 16:17:18 +01:00
81df4e1e98
gnu: Add r-rttf2pt1.
...
* gnu/packages/cran.scm (r-rttf2pt1): New variable.
2019-03-27 16:17:18 +01:00
06013a45aa
gnu: emacs-debbugs: Update to 0.17.
...
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.17.
2019-03-27 14:59:42 +01:00
42314ffa07
refresh: Update the source code URL.
...
Reported by Tobias Geerinckx-Rice <me@tobias.gr>
in <https://bugs.gnu.org/35010 >.
* guix/upstream.scm (update-package-source): Take 'source' instead of
'version' as the second argument.
[update-expression]: Change to take 'replacements', a list of
replacement pairs.
Compute OLD-URL and NEW-URL and replace the dirname of the OLD-URL with
that of NEW-URL.
* guix/scripts/refresh.scm (update-package): Adjust call to
'update-package-source' accordingly.
2019-03-27 14:59:42 +01:00
1ee3d2dcb8
upstream: 'package-update' returns the <upstream-source> object.
...
Fixes a regression introduced in
abd4d6b33d
2019-03-27 14:59:41 +01:00
18c51cf3d3
gnu: Add r-xyz.
...
* gnu/packages/cran.scm (r-xyz): New variable.
2019-03-27 14:43:26 +01:00
9e5f2060ad
scripts: Skip 'guix pull' suggestion when running code from a checkout.
...
* guix/scripts.scm (warn-about-old-distro): Do not warn when
GUIX_UNINSTALLED is set.
2019-03-27 11:54:06 +01:00
45c0d1d790
vm: Ask QEMU for more RAM in the VM that makes ISO9660 images.
...
* gnu/system/vm.scm (iso9660-image): Pass #:memory-size to
'expression->derivation-in-linux-vm'.
2019-03-27 11:54:06 +01:00
391e0d65d7
services: Deprecate 'xfce-desktop-service'.
...
* gnu/services/desktop.scm (xfce-desktop-service-type)[default-value]
[description]: New fields.
(xfce-desktop-service): Deprecate.
* gnu/system/examples/desktop.tmpl: Use the (service …) form.
* gnu/installer/services.scm (%desktop-environments): Add TODO comment.
* doc/guix.texi (Desktop Services): Adjust accordingly, and fix spelling
of "Xfce" throughout.
2019-03-27 11:54:06 +01:00
ee05cc7fe3
services: Deprecate 'gnome-desktop-service'.
...
* gnu/services/desktop.scm (gnome-desktop-service-type)[default-value]:
New field.
(gnome-desktop-service): Deprecate.
* gnu/installer/services.scm (%desktop-environments): Use the (service …)
form for GNOME.
* gnu/system/examples/desktop.tmpl: Likewise.
* doc/guix.texi (Desktop Services): Adjust accordingly.
2019-03-27 11:54:06 +01:00
1c155ec76b
installer: Use the (service …) form for MATE.
...
* gnu/installer/services.scm (%desktop-environments): Use
'mate-desktop-service-type' for MATE.
2019-03-27 11:54:05 +01:00
c73e554c3f
installer: Ask for confirmation before formatting partitions.
...
* gnu/installer/newt/page.scm (run-confirmation-page): New procedure.
* gnu/installer/newt/partition.scm (draw-formatting-page): Call it.
2019-03-27 11:54:05 +01:00
50247be5f4
installer: Produce an 'initrd-modules' field if needed.
...
* gnu/installer/parted.scm (root-user-partition?): New procedure.
(bootloader-configuration): Use it.
(user-partition-missing-modules, initrd-configuration): New procedures.
(user-partitions->configuration): Call 'initrd-configuration'.o
* gnu/installer.scm (not-config?): Rename to...
(module-to-import?): ... this. Add cases to exclude non-installer and
non-build (gnu …) modules.
(installer-program)[installer-builder]: Add GUIX to the extension list.
2019-03-27 11:54:05 +01:00
54043bf23f
installer: Emit 'bootloader' field before 'swap-devices'.
...
* gnu/installer/parted.scm (user-partitions->configuration): Move
'bootloader' section above 'swap-devices'.
2019-03-27 11:54:05 +01:00
37099f5844
gnu: Add emacs-webfeeder.
...
* gnu/packages/emacs-xyz.scm (emacs-webfeeder): New variable.
2019-03-27 11:33:09 +01:00
58d8225ddb
gnu: trim-galore: Add pigz.
...
* gnu/packages/bioinformatics.scm (trim-galore)[inputs]: Add pigz.
[arguments]: Embed reference to pigz.
2019-03-27 11:32:08 +01:00
5f1e31094d
gnu: trim-galore: Fix test for Python.
...
* gnu/packages/bioinformatics.scm (trim-galore)[arguments]: Replace
"configure" phase to skip ill-advised test for Python.
2019-03-27 11:28:38 +01:00
2a509880d4
gnu: hdf-java: Adjust indentation.
...
* gnu/packages/maths.scm (hdf-java): Adjust indentation.
2019-03-27 10:47:34 +01:00
64dc8b0bfd
gnu: hdf-java: Fix build.
...
* gnu/packages/maths.scm (hdf-java)[arguments]: Fix copying from automake;
substitute embedded hdf5 version number.
2019-03-27 10:13:46 +01:00
9286c0f7e8
gnu: hdf-java: Use INVOKE.
...
* gnu/packages/maths.scm (hdf-java)[arguments]: Unconditionally return #T from
build phases.
2019-03-27 10:12:57 +01:00
dfe420ee46
gnu: r-rhdf5lib: Update to 1.4.3.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.3.
2019-03-27 09:33:50 +01:00
3b6c77445b
gnu: r-genomicfeatures: Update to 1.34.7.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.7.
2019-03-27 09:33:50 +01:00
a12c527d3c
gnu: r-hdf5r: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-hdf5r): Update to 1.1.1.
2019-03-27 09:33:50 +01:00
a7332d1a2f
gnu: r-caret: Update to 6.0-82.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-82.
2019-03-27 09:33:50 +01:00
733b3c59da
gnu: r-gtable: Update to 0.3.0.
...
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.0.
2019-03-27 09:33:50 +01:00
fc64504f2d
gnu: grantlee: Delete broken tests.
...
* gnu/packages/qt.scm (grantlee)[arguments]: Add phase "delete-broken-tests".
2019-03-27 09:33:50 +01:00
4fee5ec049
gnu: Add adanaxis-mush and adanaxisgpl.
...
* gnu/packages/games.scm (adanaxis-mush, adanaxisgpl): New variables.
2019-03-26 20:59:15 -04:00
4dcf221c85
gnu: qjackctl: Re-enable xunique.
...
Version 0.5.6 of qjackctl appears to have fixed the xunique
bug that was causing X hanging when using tiling window managers.
See d54a1da43f/ChangeLog (L9)
2019-03-27 00:09:38 +01:00
dd2f0cdba1
gnu: python-django-overextends: Use INVOKE.
...
* gnu/packages/django.scm (python-django-overextends)[arguments]: Use INVOKE.
2019-03-27 00:04:07 +01:00
de6be02379
gnu: python-django-contact-form: Use INVOKE.
...
* gnu/packages/django.scm (python-django-contact-form)[arguments]: Use INVOKE.
2019-03-27 00:03:31 +01:00
7cdc7e579b
gnu: fritzing: Update to 0.9.3b.
...
* gnu/packages/engineering.scm (fritzing): Update to 0.9.3b.
[source]: Fetch from git.
[arguments]: Use INVOKE and adjust configure phase.
[inputs]: Add libgit2; fetch fritzing-parts-db via git.
2019-03-26 23:58:33 +01:00
68631e037b
gnu: ldc: Use INVOKE.
...
* gnu/packages/dlang.scm (ldc)[arguments]: Use INVOKE.
2019-03-26 23:13:54 +01:00
4b81d5c4bc
gnu: ldc-bootstrap: Use INVOKE.
...
* gnu/packages/dlang.scm (ldc-bootstrap)[arguments]: Use INVOKE and
unconditionally return #T from build phase.
2019-03-26 23:13:54 +01:00
27cd31e6a5
gnu: open-adventure: Use INVOKE.
...
* gnu/packages/games.scm (open-adventure)[arguments]: Use INVOKE.
2019-03-26 23:13:54 +01:00
7b67bb1fab
gnu: 0ad: Use INVOKE.
...
* gnu/packages/games.scm (0ad)[arguments]: Use INVOKE.
2019-03-26 23:13:51 +01:00
c771b799bd
gnu: Add jami-client-gnome.
...
* gnu/packages/telephony.scm (jami-client-gnome): New variable.
2019-03-26 19:17:01 +01:00
b630967247
gnu: Add libringclient.
...
* gnu/packages/telephony.scm (libringclient): New variable.
2019-03-26 19:17:01 +01:00
1bfcb19bc3
gnu: Add libring.
...
* gnu/packages/telephony.scm (libring): New variable.
2019-03-26 19:17:01 +01:00
915829e662
gnu: Add pjproject-jami.
...
* gnu/packages/telephony.scm (pjproject-jami): New variable.
2019-03-26 19:17:01 +01:00
bd4b6f4164
gnu: Add pjproject.
...
* gnu/packages/telephony.scm (pjproject): New variable.
2019-03-26 19:17:01 +01:00
952afb6f8c
environment: Create /etc/group in containers.
...
Reported by Pierre Neidhardt <mail@ambrevar.xyz>.
* guix/scripts/environment.scm (launch-environment/container): Create
GROUPS and call 'write-group'.
* tests/guix-environment-container.sh: Test it.
2019-03-26 18:11:52 +01:00
8a9922bdee
environment: Use (gnu build accounts) for /etc/passwd handling.
...
* guix/scripts/environment.scm (launch-environment/container): Remove
call to 'mock-passwd'; instantiate a <password-entry> instead. Call
'write-passwd' to write the pasword database instead of using custom
code.
(mock-passwd): Remove.
* tests/guix-environment-container.sh: Test 'getpwuid'.
2019-03-26 18:11:52 +01:00
ec8bc4a34e
build-self: Disable position recording.
...
'guix pull -n' goes roughly from 40s to 35s.
* build-aux/build-self.scm (build-program): Add call to 'read-disable'.
2019-03-26 18:11:52 +01:00
863519f660
gnu: current-guix: Delay effectful bits.
...
* gnu/packages/package-management.scm (current-guix): Delay 'repository-root'.
2019-03-26 18:11:52 +01:00
28d32817d8
gnu: python-scanpy: Update to 1.4.
...
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.
[source]: Fetch from git.
[arguments]: Disable broken tests.
[native-inputs]: Add python-pytest.
[home-page]: Use HTTPS.
2019-03-26 18:06:35 +01:00
Ricardo Wurmus