Commit Graph

44239 Commits

Author SHA1 Message Date
Ricardo Wurmus afc4370d4c
gnu: Add r-refmanager.
* gnu/packages/cran.scm (r-refmanager): New variable.
2019-05-10 13:31:02 +02:00
Ricardo Wurmus 85625cae66
gnu: Add r-ggfortify.
* gnu/packages/cran.scm (r-ggfortify): New variable.
2019-05-10 13:31:02 +02:00
Ricardo Wurmus c9487dfadc
gnu: Add r-plot3d.
* gnu/packages/cran.scm (r-plot3d): New variable.
2019-05-10 13:31:02 +02:00
Ricardo Wurmus 70debac5f1
gnu: Add r-enrichr.
* gnu/packages/cran.scm (r-enrichr): New variable.
2019-05-10 13:31:02 +02:00
Ricardo Wurmus 5bea832f72
gnu: Add r-dalex.
* gnu/packages/cran.scm (r-dalex): New variable.
2019-05-10 13:31:02 +02:00
Ricardo Wurmus 4d06ef4b71
gnu: Add r-rbowtie.
* gnu/packages/bioconductor.scm (r-rbowtie): New variable.
2019-05-10 13:31:02 +02:00
Ricardo Wurmus 8c42f8f6e8
gnu: Add r-iclusterplus.
* gnu/packages/bioconductor.scm (r-iclusterplus): New variable.
2019-05-10 13:31:01 +02:00
Mark H Weaver b40a36baff
gnu: linux-libre: Update to 5.1.
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.
(%linux-libre-hash): Update hash.
(%linux-libre-5.0-patches): Rename to ...
(%linux-libre-5.1-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-veyron)
(linux-libre-arm-omap2plus): Use %linux-libre-5.1-patches.
(vhba-module): Move definition below the kernel packages.
* gnu/packages/aux-files/linux-libre/5.0-arm-veyron.conf,
gnu/packages/aux-files/linux-libre/5.0-arm.conf,
gnu/packages/aux-files/linux-libre/5.0-arm64.conf,
gnu/packages/aux-files/linux-libre/5.0-i686.conf,
gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/5.1-arm-veyron.conf,
gnu/packages/aux-files/linux-libre/5.1-arm.conf,
gnu/packages/aux-files/linux-libre/5.1-arm64.conf,
gnu/packages/aux-files/linux-libre/5.1-i686.conf,
gnu/packages/aux-files/linux-libre/5.1-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
2019-05-10 00:00:49 -04:00
Ivan Petkov 3d8033af42
gnu: rust: Update to 1.34.1.
* gnu/packages/rust.scm (rust): Update to 1.34.1.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-10 00:44:09 +02:00
Ivan Petkov 4ed20d3cfe
gnu: rust: Make source derivations smaller.
* gnu/packages/rust.scm (rust-source-pre-1.32): Delete procedure.
(rust-bootstrapped-package-pre-1.32): Delete procedure.
(rust-bootstrapped-package): Remove optional keys, and return an origin.
(rust-uri): New variable.
(mrustc): Change native-input "rust" to use source of rust-1.19.
(rust-1.19)[source]: Define package source.
(rust-1.20): Use rust-bootstrapped-package.
(rust-1.21): Likewise.
(rust-1.22): Likewise.
(rust-1.23): Likewise.
(rust-1.24): Likewise.
(rust-1.25): Likewise.
(rust-1.26): Likewise.
(rust-1.27): Likewise.
(rust-1.28): Likewise.
(rust-1.29): Likewise.
(rust-1.30): Likewise.
(rust-1.31): Likewise.
(rust-1.32): Likewise.
(rust-1.33): Likewise.
(rust-1.34): Likewise.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-10 00:44:09 +02:00
Ivan Petkov bea01c0d2b
gnu: rust: Delete install logs and manifests.
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[delete-install-logs]:
New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-10 00:44:08 +02:00
Ivan Petkov e88735b45f
build/cargo-utils: Remove "src-name" parameter.
* gnu/packages/gnuzilla.scm (icecat)[arguments]<#:phases>
[patch-cargo-checksums]: Delete "null-file" variable.
* gnu/packages/rust.scm (%cargo-reference-project-file): Delete variable.
* gnu/packages/rust.scm (rust-1.19): Remove reference to
"%cargo-reference-project-file".
* guix/build/cargo-utils.scm (generate-checksums): Remove "src-name"
parameter.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-10 00:44:08 +02:00
Ricardo Wurmus d78010b81e
gnu: gcc-4.7: Hide package.
* gnu/packages/gcc.scm (gcc-4.7): Wrap in "hidden-package" expression.
2019-05-09 23:18:39 +02:00
Ricardo Wurmus 935568d5ce
gnu: emacs-dash: Update to 2.16.0.
* gnu/packages/emacs-xyz.scm (emacs-dash): Update to 2.16.0.
2019-05-09 22:51:33 +02:00
Ricardo Wurmus b97b4624d0
gnu: Add guile-file-names.
* gnu/packages/guile-xyz.scm (guile-file-names): New variable.
2019-05-09 22:41:14 +02:00
Tobias Geerinckx-Rice ae623b3f9d
gnu: seabios: Update to 1.12.1.
This is a stable release despite the missing tarball.
<https://mail.coreboot.org/hyperkitty/list/seabios@seabios.org/thread/ONGRJVF3A45SAXOKBED52V2UD3YUWTRT/>

* gnu/packages/firmware.scm (seabios): Update to 1.12.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
2019-05-09 21:16:54 +02:00
Tobias Geerinckx-Rice 05de4c346d
gnu: man-pages: Update to 5.01.
* gnu/packages/man.scm (man-pages): Update to 5.01.
2019-05-09 21:16:53 +02:00
Tobias Geerinckx-Rice 34dce89a0c
gnu: emacs-sml-mode: Update to 6.9.
* gnu/packages/emacs-xyz.scm (emacs-sml-mode): Update to 6.9.
2019-05-09 21:16:53 +02:00
Tobias Geerinckx-Rice b03a4ed465
gnu: cdemu-client: Update to 3.2.1.
* gnu/packages/cdrom.scm (cdemu-client): Update to 3.2.1.
2019-05-09 21:13:29 +02:00
Tobias Geerinckx-Rice 97dbf75a56
gnu: cdemu-daemon: Update to 3.2.2.
* gnu/packages/cdrom.scm (cdemu-daemon): Update to 3.2.2.
2019-05-09 21:13:28 +02:00
Tobias Geerinckx-Rice d201571754
gnu: libmirage: Update to 3.2.2.
* gnu/packages/cdrom.scm (libmirage): Update to 3.2.2.
2019-05-09 21:13:28 +02:00
Tobias Geerinckx-Rice 819b3b8201
gnu: vhba-module: Update to 20190410.
* gnu/packages/linux.scm (vhba-module): Update to 20190410.
2019-05-09 21:13:28 +02:00
Tobias Geerinckx-Rice 38878020b0
gnu: cloc: Update to 1.82.
* gnu/packages/code.scm (cloc): Update to 1.82.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
2019-05-09 21:13:28 +02:00
Marius Bakke 6c2180f5d0
services: dhcp-client: Ignore interfaces that are not ARP capable.
* gnu/services/networking.scm (dhcp-client-service-type): Filter interfaces
that do not support the ARP protocol.
2019-05-09 20:00:22 +02:00
Marius Bakke 5f5499d684
syscalls: Add 'arp-network-interface?'.
* guix/build/syscalls.scm (IFF_NOARP): New variable.
(arp-network-interface?): New public procedure.
2019-05-09 20:00:21 +02:00
Ludovic Courtès a0dc97a517
pull: Display 'hash guix' hint when the new and old 'guix' are different.
Fixes <https://bugs.gnu.org/35601>.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>.

Previously we were calling (which "guix") after the new profile had been
built and symlinked, so in most cases the hint would not be triggered,
even though it should have been triggered.

* guix/scripts/pull.scm (build-and-install)[guix-command]: New variable.
Compare PROFILE/bin/guix against GUIX-COMMAND.
2019-05-09 17:42:31 +02:00
Ludovic Courtès 8deb65c378
tests: Ensure 'unshare' works before relying on it.
Fixes <https://bugs.gnu.org/35642>.
Reported by Josh Holland <josh@inv.alid.pw>.

* tests/guix-pack-relocatable.sh: Before invoking 'unshare' at the
bottom, add "if unshare -r true" condition.
* tests/guix-pack.sh: Likewise.
2019-05-09 17:42:31 +02:00
Marius Bakke 18160c3408
gnu: Use mirror://kernel.org in source URIs.
* gnu/packages/linux.scm (bridge-utils, cpufrequtils, sbc)[source](uri): Use
"mirror://kernel.org" instead of www.kernel.org directly.
2019-05-09 14:06:07 +02:00
Marius Bakke aeb1ed1abc
gnu: wpa_supplicant: Update to 2.8 [security fixes].
This release fixes CVE-2019-9494, CVE-2019-9495, CVE-2019-9496, CVE-2019-9497,
CVE-2019-9498, CVE-2019-9499, and CVE-2019-11555.

* gnu/packages/admin.scm (wpa-supplicant-minimal): Update to 2.8.
[source](snippet): New field.  Disable D-Bus.
[arguments]: Change CONFIG_TLS to use OpenSSL rather than GnuTLS.  This is
required by many of the new default build-time settings.
[inputs]: Remove GNUTLS and LIBGCRYPT.  Add OPENSSL.
(wpa-supplicant)[arguments]: Remove obsolete CONFIG_CTRL_IFACE_DBUS=y.
2019-05-09 13:43:03 +02:00
Marius Bakke 3fde051bfd
gnu: libtorrent-rasterbar: Update to 1.1.13.
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.13.
2019-05-09 13:43:03 +02:00
Marius Bakke 3a32be71eb
gnu: leveldb: Update to 1.22.
* gnu/packages/databases.scm (leveldb): Update to 1.22.
2019-05-09 13:43:03 +02:00
Josh Holland 4506018e28
gnu: Mercurial: Update to 5.0
* gnu/packages/version-control.scm (mercurial): Update to 5.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-09 12:11:37 +02:00
Ludovic Courtès e6b1a2248f
services: Log-in services now require "pam_loginuid".
Fixes <https://bugs.gnu.org/35553>.
Reported by Bruno Haible <bruno@clisp.org>.

* gnu/services/base.scm (login-pam-service): Pass #:login-uid? #t to
'unix-pam-service'.
* gnu/services/ssh.scm (lsh-pam-services, openssh-pam-services):
Likewise.
* gnu/services/xorg.scm (slim-pam-service): Likewise.
(gdm-pam-service): Likewise for "gdm-autologin" and "gdm-password".
* gnu/tests/base.scm (run-basic-test)["getlogin on tty1"]: New test.
* gnu/tests/ssh.scm (run-ssh-test): Add #:test-getlogin? parameter.
["getlogin"]: New test.
(%test-dropbear): Pass #:test-getlogin? #f.
2019-05-09 12:11:36 +02:00
Ludovic Courtès af55ca481d
system: pam: Add #:login-uid? parameter to 'unix-pam-service'.
* gnu/system/pam.scm (unix-pam-service): Add #:login-uid? parameter.  In
then 'session' field, add "pam_loginuid.so" as required when LOGIN-UID?
is true.
2019-05-09 12:11:36 +02:00
Ludovic Courtès 56038bac60
gnu: Add hostapd.
* gnu/packages/admin.scm (hostapd): New variable.
2019-05-09 12:11:36 +02:00
Ludovic Courtès 6ad799d7c5
services: slim: Provide the 'xorg-server' Shepherd service.
This is a followup to 61569171d0.

* gnu/services/xorg.scm (slim-shepherd-service): Add 'xorg-server' to
'provision' when VT is "vt7".
2019-05-09 12:11:36 +02:00
Ludovic Courtès cae0725b80
bootloader: grub: Remove unneeded 'terminal_output'.
Fixes <https://bugs.gnu.org/35585>.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.

This statement was added in 8d058e7b1b but
turned out to be unnecessary.

* gnu/bootloader/grub.scm (grub-configuration-file): Remove
'terminal_output' statement.
2019-05-09 12:11:36 +02:00
Ludovic Courtès fb98e430d4
installer: Add missing 'G_' call.
* gnu/installer/newt/user.scm (run-user-page): Add 'G_' call for "User
creation".
2019-05-09 12:11:36 +02:00
Josh Holland 4ac8dd43f0
doc: Fix typo.
* doc/guix.texi (cargo-build-system): Correct Carto.toml.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2019-05-09 12:54:18 +05:30
Chris Marusich 387e6b9e34
ui: Make package outputs searchable.
* guix/ui.scm (relevance): Allow the "field" procedure of a metric to
return a list, and handle that case appropriately.  Update docstring.
(%package-metrics): Add a metric for package outputs.
* guix/scripts/package.scm (find-packages-by-description): Update
docstring.
* tests/guix-package.sh: Add a test case to verify that package outputs are
included in search results.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
2019-05-09 00:10:34 -07:00
Maxim Cournoyer 063edf928a
gnu: Add python-pylibmc.
* gnu/packages/databases.scm (python-pylibmc, python2-pylibmc): New variables.
2019-05-09 00:22:38 -04:00
Maxim Cournoyer da6026792b
gnu: Add libmemcached.
* gnu/packages/databases.scm (libmemcached): New variable.
2019-05-09 00:22:37 -04:00
Maxim Cournoyer 4ac69ea10f
Add (guix bzr-download).
* guix/bzr-download.scm, guix/build/bzr.scm,
etc/snippets/scheme-mode/guix-bzr-reference: New files.
* Makefile.am (MODULES): Add them.
* etc/snippets/scheme-mode/guix-origin: Add "bzr-fetch" to the origin choices.
2019-05-09 00:22:37 -04:00
Mark H Weaver c526b3176f
gnu: linux-libre: Update to 5.0.14.
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.14.
(%linux-libre-hash): Update hash.
2019-05-08 22:51:27 -04:00
Mark H Weaver 013130cf0b
gnu: linux-libre@4.19: Update to 4.19.41.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.41.
(%linux-libre-4.19-hash): Update hash.
2019-05-08 22:19:29 -04:00
Mark H Weaver f9ab5c47bd
gnu: linux-libre@4.14: Update to 4.14.117.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.117.
(%linux-libre-4.14-hash): Update hash.
2019-05-08 22:18:13 -04:00
Mark H Weaver 9902e3dfd8
gnu: linux-libre@4.9: Update to 4.9.174.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.174.
2019-05-08 22:17:31 -04:00
Tobias Geerinckx-Rice 429a38a009
gnu: usbutils: Add ‘python’ output.
* gnu/packages/linux.scm (usbutils)[outputs]: Add ‘python’.
[arguments]: Add ‘separate-python-output’ phase.
2019-05-09 01:14:55 +02:00
Tobias Geerinckx-Rice a6592732cf
gnu: usbutils: Fix broken lsusb.py.
* gnu/packages/linux.scm (usbutils)[inputs]: Add python.
2019-05-09 01:14:55 +02:00
Tobias Geerinckx-Rice 5b26635893
gnu: usbutils: Update to 012.
* gnu/packages/linux.scm (usbutils): Update to 012.
[arguments]: Add ‘patch-bootstrap-scripts’ phase.
[native-inputs]: Add autoconf, automake, and libtool.
2019-05-09 01:14:55 +02:00