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24834 Commits

Author SHA1 Message Date
Ludovic Courtès eca16a3d1d
guix package: '--upgrade' no longer reverses package order. 
Reported by Oleg Pykhalov <go.wigust@gmail.com>
at <https://lists.gnu.org/archive/html/help-guix/2017-10/msg00000.html>.

* guix/scripts/package.scm (options->installable)[upgraded]: Use
'fold-right' instead of 'fold'.
 2017-10-07 17:08:32 +02:00
Marius Bakke ad3a937dae
Merge branch 'master' into staging 2017-10-07 12:54:40 +02:00
Ben Woodcroft 3ae76f7f57
gnu: vsearch: Update to 2.5.0. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.5.0.
 2017-10-07 09:42:55 +10:00
Mark H Weaver ecfcb2e048
gnu: linux-libre: Update to 4.13.5. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.5.
(%linux-libre-hash): Update hash.
 2017-10-06 18:29:05 -04:00
Mark H Weaver 4556703783
gnu: linux-libre@4.9: Update to 4.9.53. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.53.
 2017-10-06 18:28:26 -04:00
Mark H Weaver 428951b84f
gnu: linux-libre@4.4: Update to 4.4.90. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.90.
 2017-10-06 18:27:45 -04:00
Ludovic Courtès 90d23ed9df
system: Really filter out Linux device names for the store. 
This is a followup to db4e8fd5d4.
Fixes <https://bugs.gnu.org/28445>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/system.scm (ensure-not-/dev): New procedure.
(read-boot-parameters)[ensure-not-/dev]: Remove.
(operating-system-boot-parameters): Use it.
 2017-10-07 00:05:18 +02:00
Christopher Baines 5266ff719e
services: Add MongoDB. 
* gnu/services/databases.scm (%default-mongodb-configuration-file,
  %mongodb-accounts, mongodb-service-type): New variables.
  (<mongodb-configuration>): New record type.
  (mongodb-activation, mongodb-shepherd-service): New procedures.
* gnu/tests/databases.scm (%test-mongodb): New variable.
* doc/guix.texi (Database Services): Add MongoDB documentation.
 2017-10-06 21:24:30 +01:00
Christopher Baines 6bbbca9073
gnu: Add mongodb. 
* gnu/packages/databases.scm (mongodb): New variable.
 2017-10-06 21:24:23 +01:00
Tobias Geerinckx-Rice 4bbc27aca0
gnu: btrfs-progs: Update to 4.13.2. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.13.2.
 2017-10-06 17:33:52 +02:00
Efraim Flashner 2320d4f058
gnu: glibc-locales: Use 'modify-phases' syntax. 
* gnu/packages/base.scm (glibc-locales)[arguments]: Use 'modify-phases'
syntax.
 2017-10-06 16:00:11 +03:00
Ludovic Courtès 1738e24455
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix): Update to 8b920d7.
 2017-10-06 14:43:31 +02:00
Ludovic Courtès 8b920d707e
import: Use a 'file://' URL in 'alist->package' test. 
* tests/import-utils.scm ("alist->package with simple source"): Use a
'file://' URL.
 2017-10-06 14:16:24 +02:00
Ludovic Courtès 0b12324284
uuid: Fix typo in 'uuid=?' test. 
* tests/uuid.scm ("uuid=?"): Change to 'test-assert'.
 2017-10-06 14:16:23 +02:00
Marius Bakke 6a317919cf
Merge branch 'master' into staging 2017-10-06 11:03:27 +02:00
Marius Bakke 68932812b8
gnu: libdrm: Disable etnaviv driver. 
* gnu/packages/xdisorg.scm (libdrm)<#:configure-flags>: On armhf-linux, don't
build etnaviv driver.
 2017-10-06 11:00:52 +02:00
Tobias Geerinckx-Rice 8bde6a524e
gnu: dconf: Update to 0.26.1. 
* gnu/packages/gnome.scm (dconf): Update to 0.26.1.
 2017-10-06 01:00:59 +02:00
Tobias Geerinckx-Rice 4a79befe2c
gnu: glade: Update to 3.20.1. 
* gnu/packages/gnome.scm (glade): Update to 3.20.1.
 2017-10-06 01:00:58 +02:00
Tobias Geerinckx-Rice 6c97f17fa1
gnu: tor: Enable directory protocol compression. 
* gnu/packages/tor.scm (tor)[native-inputs]: Add pkg-config.
[inputs]: Add xz and zstd.
 2017-10-06 01:00:49 +02:00
Tobias Geerinckx-Rice b519d46269
gnu: tor: Fix typo. 
* gnu/packages/tor.scm (tor)[inputs]: Move unquote to its operand.
 2017-10-06 01:00:11 +02:00
Marius Bakke 594156ec6f
gnu: texlive-bin: Fix FTBFS with Poppler >= 0.58. 
* gnu/packages/tex.scm (texlive-bin)[source](patches): Add patch from Arch Linux.
[arguments]<#:configure-flags>: Add CXXFLAGS=-std=gnu++11.
 2017-10-06 00:49:50 +02:00
Arun Isaac 5ca4fe9696
gnu: octave: Reference makeinfo with absolute path. 
* gnu/packages/maths.scm (octave)[arguments]: Add configure-makeinfo phase.
[inputs]: Add texinfo.
[native-inputs]: Remove texinfo.
 2017-10-06 03:34:59 +05:30
Ludovic Courtès e5788ebbe1
publish: Cache uncompressed nars as well. 
Fixes <https://bugs.gnu.org/28664>.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>.

* guix/scripts/publish.scm (bake-narinfo+nar): When COMPRESSION is
'none, write NAR instead of doing nothing.
(make-request-handler): Use 'render-nar/cached' for /nar URLs with no
compression.
* tests/publish.scm ("with cache", "with cache, uncompressed"): Adjust
expected result accordingly.
 2017-10-05 23:05:06 +02:00
Marius Bakke c4787c7831
gnu: inkscape: Fix FTBFS with Poppler >= 0.58. 
* gnu/packages/inkscape.scm (inkscape)[source]: Add upstream patch.
 2017-10-05 22:32:23 +02:00
Marius Bakke 7006370e59
gnu: vte-ng: Update to 0.50.1.a. 
* gnu/packages/gnome.scm (vte-ng): Update to 0.50.1.a.
 2017-10-05 20:28:33 +02:00
Marius Bakke 3f697ff2e8
gnu: openjpeg: Update to 2.3.0. 
* gnu/packages/patches/openjpeg-CVE-2017-12982.patch,
gnu/packages/patches/openjpeg-CVE-2017-14040.patch,
gnu/packages/patches/openjpeg-CVE-2017-14041.patch,
gnu/packages/patches/openjpeg-CVE-2017-14151.patch,
gnu/packages/patches/openjpeg-CVE-2017-14152.patch,
gnu/packages/patches/openjpeg-CVE-2017-14164.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (openjpeg): Update to 2.3.0.
[source](patches): Remove.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[arguments]: Adjust openjpeg
substitution.
 2017-10-05 20:28:32 +02:00
Marius Bakke 6d89a1ab4e
gnu: imagemagick: Update to 6.9.9-18. 
Fixes <https://bugs.gnu.org/28692>.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>.

* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-18.
 2017-10-05 20:14:13 +02:00
Leo Famulari 6cdd8c97b7
gnu: libpng@1.2: Update to 1.2.59. 
* gnu/packages/image.scm (libpng-1.2): Update to 1.2.59.
 2017-10-05 10:42:36 -04:00
Leo Famulari eb93f1c9c4
gnu: certbot, python-acme: Update to 0.19.0. 
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.19.0.
 2017-10-05 10:38:52 -04:00
Kei Kebreau 5fe56448f3
gnu: lightning: Update to 2.1.2. 
* gnu/packages/assembly.scm (lightning): Update to 2.1.2.
 2017-10-05 10:36:06 -04:00
Ricardo Wurmus 227dbd841a
gnu: Add pdsh. 
* gnu/packages/ssh.scm (pdsh): New variable.
 2017-10-05 15:17:26 +02:00
Dave Love 04717e9406
gnu: Add imb-openmpi. 
* gnu/packages/benchmark.scm (imb): New procedure.
(imb-openmpi): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-05 12:09:17 +02:00
Ludovic Courtès 9d80d0e95c
guix system: Error out when passed a wrong file system UUID/label. 
* guix/scripts/system.scm (check-file-system-availability): New
procedure.
(perform-action): Use it.
 2017-10-05 12:09:17 +02:00
Ludovic Courtès dd41a7f8d8
file-systems: Add a 'location' field to <file-system>. 
* gnu/system/file-systems.scm (<file-system>)[location]: New field.
 2017-10-05 12:09:17 +02:00
Ludovic Courtès aed1f1b049
uuid: Add 'uuid=?' and use it. 
* gnu/system/uuid.scm (uuid=?): New procedure.
* tests/uuid.scm ("uuid=?"): New test.
* gnu/build/file-systems.scm (partition-uuid-predicate)
(luks-partition-uuid-predicate): Use it instead of 'bytevector=?'.
 2017-10-05 12:09:17 +02:00
Ricardo Wurmus 67a08f1809
gnu: Add python-numpy-next. 
* gnu/packages/python.scm (python-numpy-next, python2-numpy-next): New
variables.
 2017-10-05 12:04:32 +02:00
Ricardo Wurmus eaa1db1de6
Revert "gnu: python-numpy: Update to 1.13.1." 
This reverts commit 025b196d9b.

This is necessary as neither the current release nor the latest development
version of python-pandas can be build with numpy 1.13.x.
 2017-10-05 12:04:32 +02:00
Kei Kebreau 46cf31868c
gnu: curl: Update replacement to 7.56.0 [security fixes]. 
Fixes CVE-2017-1000254.
See <https://curl.haxx.se/docs/adv_20171004.html> for details.

* gnu/packages/curl.scm (curl)[replacement]: Update to 7.56.0.
(curl-7.55.0): Rename to ...
(curl-7.56.0): ... this.
[arguments]: Remove 'fix-Makefile' phase.
[source]: Remove patch.
* gnu/packages/patches/curl-bounds-check.patch: Delete it.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-10-04 19:37:55 -04:00
Leo Famulari 488d380c82
gnu: go: update to 1.9.1 [security fixes]. 
See the release announcement and bug reports for more details about the
security issues fixed in this release:

https://groups.google.com/forum/m/#!topic/golang-nuts/sHfMg4gZNps
https://golang.org/issue/22125
https://golang.org/issue/22134

* gnu/packages/golang.scm (go-1.9): Update to 1.9.1.
 2017-10-04 19:08:09 -04:00
Marius Bakke 7716ccd59c
Merge branch 'master' into staging 2017-10-05 00:45:38 +02:00
Marius Bakke a35532f52d
gnu: xorg-server: Update to 1.19.4 [fixes CVE-2017-13721, CVE-2017-13723]. 
The GPG signature for the bz2 tarball is bad, but the checksum matches the
signed release announcement, and contents are identical to the good .gz.

* gnu/packages/xorg.scm (xorg-server): Update to 1.19.4.
[source]: Remove obsolete patches.
* gnu/packages/patches/xorg-server-CVE-2017-10971.patch,
gnu/packages/patches/xorg-server-CVE-2017-10972.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2017-10-05 00:42:56 +02:00
Leo Famulari f120b4abe5
gnu: mutt: Update to 1.9.1. 
* gnu/packages/mail.scm (mutt): Update to 1.9.1.
 2017-10-04 16:36:20 -04:00
Leo Famulari 4949023137
gnu: isync: Update to 1.3.0. 
* gnu/packages/mail.scm (isync): Update to 1.3.0.
[native-inputs]: Add perl.
 2017-10-04 15:58:11 -04:00
Ricardo Wurmus 63aa8558ad
gnu: Add python-parameterized. 
* gnu/packages/check.scm (python-parameterized, python2-parameterized): New
variables.
 2017-10-04 15:19:52 +02:00
Ricardo Wurmus cb91edebda
gnu: python-numexpr: Update to 2.6.4. 
* gnu/packages/python.scm (python-numexpr): Update to 2.6.4.
 2017-10-04 15:19:52 +02:00
Thomas Danckaert 1033cdbb0c
gnu: python-numpy: Give sh store location instead of setting $SHELL. 
* gnu/packages/python.scm (python-numpy): [arguments] Don't set $SHELL in the
  environment, but embed the store location of bash-minimal as a default
  shell.  Otherwise, we have to set $SHELL for every package which uses
  numpy's distutils.
 2017-10-04 14:09:52 +02:00
Efraim Flashner 48b68c6178
gnu: virtuoso-ose: Limit to 64-bit platforms. 
* gnu/packages/databases.scm (virtuoso-ose)[supported-systems]: New field.
 2017-10-04 10:51:19 +03:00
Feng Shu 6fe2d37ccf
gnu: emacs-pyim: Fix error input name 
* gnu/packages/emacs.scm (emacs-pyim): Fix error input name.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2017-10-04 07:44:32 +01:00
Oleg Pykhalov d2f93e61db
gnu: emacs-slime: Update to 2.20. 
* gnu/packages/emacs.scm (emacs-slime): Update to 2.20.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2017-10-04 07:44:29 +01:00
Efraim Flashner f473b8f1f7
gnu: clisp: Update to 2.49-60. 
* gnu/packages/lisp.scm (clisp): Update to 2.49-60.
[source]: Download mercurial repository, apply patch.
[inputs]: Replace readline@6.2 with readline, add ncurses.
[arguments]: Add multiple configure flags. Remove build phase to build
in "src" directory. Remove more uses of a timestamp.
 2017-10-04 09:29:24 +03:00