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348 Commits

Author SHA1 Message Date
Ricardo Wurmus 4d06ef4b71
gnu: Add r-rbowtie. 
* gnu/packages/bioconductor.scm (r-rbowtie): New variable.
 2019-05-10 13:31:02 +02:00
Ricardo Wurmus 8c42f8f6e8
gnu: Add r-iclusterplus. 
* gnu/packages/bioconductor.scm (r-iclusterplus): New variable.
 2019-05-10 13:31:01 +02:00
Ricardo Wurmus 93f8a00964
gnu: r-rgadem: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.32.0.
 2019-05-06 16:11:17 +02:00
Ricardo Wurmus 85c1d20fa6
gnu: r-chippeakanno: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.0.
[propagated-inputs]: Add r-rtracklayer.
 2019-05-06 00:14:59 +02:00
Ricardo Wurmus c24adbbf07
gnu: r-arrmnormalization: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.24.0.
 2019-05-06 00:14:59 +02:00
Ricardo Wurmus c2bfb978bf
gnu: r-progeny: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.6.0.
 2019-05-06 00:14:59 +02:00
Ricardo Wurmus 7d33d36c52
gnu: r-rbowtie2: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.6.0.
 2019-05-06 00:14:58 +02:00
Ricardo Wurmus 02530c2821
gnu: r-zfpkm: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.6.0.
 2019-05-06 00:14:58 +02:00
Ricardo Wurmus 67bc9255d5
gnu: r-webbioc: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.56.0.
 2019-05-06 00:14:58 +02:00
Ricardo Wurmus c881b9ef3a
gnu: r-widgettools: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.62.0.
 2019-05-06 00:14:58 +02:00
Ricardo Wurmus a6edf33533
gnu: r-wiggleplotr: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.8.0.
 2019-05-06 00:14:58 +02:00
Ricardo Wurmus 07597c85d8
gnu: r-wrench: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.2.0.
 2019-05-06 00:14:58 +02:00
Ricardo Wurmus 298f7f112f
gnu: r-xcms: Update to 3.6.0. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.6.0.
 2019-05-06 00:14:58 +02:00
Ricardo Wurmus 7c888138ef
gnu: r-massspecwavelet: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.50.0.
 2019-05-06 00:14:58 +02:00
Ricardo Wurmus 88469def75
gnu: r-xbseq: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.16.0.
 2019-05-06 00:14:57 +02:00
Ricardo Wurmus 0334b203d7
gnu: r-roar: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.20.0.
 2019-05-06 00:14:57 +02:00
Ricardo Wurmus 7f4957b24e
gnu: r-yarn: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.10.0.
 2019-05-06 00:14:57 +02:00
Ricardo Wurmus 2feea2d22a
gnu: r-quantro: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.18.0.
 2019-05-06 00:14:57 +02:00
Ricardo Wurmus f48e29daa3
gnu: r-yaqcaffy: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.44.0.
 2019-05-06 00:14:57 +02:00
Ricardo Wurmus 38c5d13a73
gnu: r-simpleaffy: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.60.0.
 2019-05-06 00:14:57 +02:00
Ricardo Wurmus 56576bea97
gnu: r-gcrma: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.56.0.
 2019-05-06 00:14:57 +02:00
Ricardo Wurmus edba69b2ff
gnu: r-yapsa: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.10.0.
 2019-05-06 00:14:57 +02:00
Ricardo Wurmus 3cdc5d1a7b
gnu: r-somaticsignatures: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.20.0.
 2019-05-06 00:14:56 +02:00
Ricardo Wurmus 128c6d59f0
gnu: r-gtrellis: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.0.
 2019-05-06 00:14:56 +02:00
Ricardo Wurmus 1269a926c0
gnu: r-yamss: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.10.0.
 2019-05-06 00:14:56 +02:00
Ricardo Wurmus 2a6d838337
gnu: r-ebimage: Update to 4.26.0. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.26.0.
 2019-05-06 00:14:56 +02:00
Ricardo Wurmus b68a9e80f4
gnu: r-aucell: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.6.0.
 2019-05-06 00:14:56 +02:00
Ricardo Wurmus 9da2021f49
gnu: r-allelicimbalance: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.22.0.
 2019-05-06 00:14:56 +02:00
Ricardo Wurmus ee1a45d719
gnu: r-annotationtools: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.58.0.
 2019-05-06 00:14:56 +02:00
Ricardo Wurmus 69a2ec5447
gnu: r-annotationfuncs: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.34.0.
 2019-05-06 00:14:56 +02:00
Ricardo Wurmus e2e1dea2bb
gnu: r-abaenrichment: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.0.
 2019-05-06 00:14:55 +02:00
Ricardo Wurmus bab06a6ff3
gnu: r-gofuncr: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.4.0.
 2019-05-06 00:14:55 +02:00
Ricardo Wurmus bcc233c1a6
gnu: r-atacseqqc: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.0.
[propagated-inputs]: Add r-edger.
 2019-05-06 00:14:55 +02:00
Ricardo Wurmus 19ee76379c
gnu: r-genomicscores: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.8.0.
 2019-05-06 00:14:55 +02:00
Ricardo Wurmus aa0ebfd2eb
gnu: r-motifstack: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.28.0.
[propagated-inputs]: Replace r-grimport with r-grimport2.
 2019-05-06 00:14:55 +02:00
Ricardo Wurmus f7a495b159
gnu: r-motiv: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.40.0.
 2019-05-06 00:14:55 +02:00
Ricardo Wurmus a5860ebe87
gnu: r-rgadem: Update to 2.31.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.31.0.
 2019-05-06 00:14:54 +02:00
Ricardo Wurmus e33c25ff2c
gnu: r-bacon: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.12.0.
 2019-05-06 00:14:54 +02:00
Ricardo Wurmus b7ddf0f048
gnu: r-abseqr: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.2.0.
 2019-05-06 00:14:54 +02:00
Ricardo Wurmus 1aadddeaa9
gnu: r-a4: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.32.0.
 2019-05-06 00:14:54 +02:00
Ricardo Wurmus ae1730ae1a
gnu: r-a4base: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.32.0.
 2019-05-06 00:14:54 +02:00
Ricardo Wurmus e5a36543ac
gnu: r-a4reporting: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.32.0.
 2019-05-06 00:14:54 +02:00
Ricardo Wurmus 0b6091621f
gnu: r-a4preproc: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.32.0.
 2019-05-06 00:14:54 +02:00
Ricardo Wurmus 82de77da5a
gnu: r-a4classif: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.32.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus b077e3db2a
gnu: r-a4core: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.32.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus 8bef9df4d4
gnu: r-annaffy: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.56.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus 8265a1115e
gnu: r-mlinterfaces: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.64.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus 1a3e33be23
gnu: r-clusterprofiler: Update to 3.12.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.12.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus 77d28d665c
gnu: r-enrichplot: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.4.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus 1990ff9d10
gnu: r-dose: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus ebffd24c10
gnu: r-fgsea: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.10.0.
[propagated-inputs]: Add r-bh.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus 3e5ee6f69f
gnu: r-sigpathway: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.52.0.
 2019-05-06 00:14:53 +02:00
Ricardo Wurmus 0a41b5db95
gnu: r-anota: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.32.0.
 2019-05-06 00:14:52 +02:00
Ricardo Wurmus 24cf7bad99
gnu: r-gosemsim: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.10.0.
 2019-05-06 00:14:52 +02:00
Ricardo Wurmus 376d1fe759
gnu: r-heatplus: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.30.0.
 2019-05-06 00:14:52 +02:00
Ricardo Wurmus c2effdedc0
gnu: r-varianttools: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.26.0.
 2019-05-06 00:14:52 +02:00
Ricardo Wurmus bc083ecab8
gnu: r-triform: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-triform): Update to 1.26.0.
 2019-05-06 00:14:52 +02:00
Ricardo Wurmus 2ee91179d1
gnu: r-ioniser: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.8.0.
 2019-05-06 00:14:52 +02:00
Ricardo Wurmus 48c2a7eb39
gnu: r-linnorm: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.8.0.
 2019-05-06 00:14:52 +02:00
Ricardo Wurmus 5551b07cde
gnu: r-lumi: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.36.0.
 2019-05-06 00:14:51 +02:00
Ricardo Wurmus 2986b51ffe
gnu: r-methylumi: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.30.0.
 2019-05-06 00:14:51 +02:00
Ricardo Wurmus 8c0fae3cd4
gnu: r-minfi: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.30.0.
 2019-05-06 00:14:51 +02:00
Ricardo Wurmus 693a98056c
gnu: r-bumphunter: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.26.0.
 2019-05-06 00:14:51 +02:00
Ricardo Wurmus 409f4dd652
gnu: r-siggenes: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.58.0.
[propagated-inputs]: Add r-scrime.
 2019-05-06 00:14:51 +02:00
Ricardo Wurmus fadc6db82d
gnu: r-illuminaio: Update to 0.26.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.26.0.
 2019-05-06 00:14:51 +02:00
Ricardo Wurmus 2d4430877a
gnu: r-geoquery: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.52.0.
 2019-05-06 00:14:51 +02:00
Ricardo Wurmus 26c72fffc1
gnu: r-scone: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.8.0.
 2019-05-06 00:14:50 +02:00
Ricardo Wurmus 7baa59ed4d
gnu: r-scdd: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.8.0.
 2019-05-06 00:14:50 +02:00
Ricardo Wurmus 6a2c58b7e0
gnu: r-noiseq: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.28.0.
 2019-05-06 00:14:50 +02:00
Ricardo Wurmus 78b6326785
gnu: r-monocle: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.12.0.
 2019-05-06 00:14:50 +02:00
Ricardo Wurmus a0ff725d6a
gnu: r-mast: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.10.0.
[propagated-inputs]: Add r-blme.
 2019-05-06 00:14:50 +02:00
Ricardo Wurmus 3fd2ea8883
gnu: r-icobra: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.0.
 2019-05-06 00:14:50 +02:00
Ricardo Wurmus bcd8b7a9bd
gnu: r-ihw: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.12.0.
 2019-05-06 00:14:50 +02:00
Ricardo Wurmus 61c79d55e3
gnu: r-lpsymphony: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.12.0.
 2019-05-06 00:14:49 +02:00
Ricardo Wurmus 4a3c47e940
gnu: r-ebseq: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.24.0.
 2019-05-06 00:14:49 +02:00
Ricardo Wurmus 301c4ff12a
gnu: r-deds: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-deds): Update to 1.58.0.
 2019-05-06 00:14:49 +02:00
Ricardo Wurmus d5f3c0d09e
gnu: r-dnacopy: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.58.0.
 2019-05-06 00:14:49 +02:00
Ricardo Wurmus d941918599
gnu: r-copynumber: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.24.0.
 2019-05-06 00:14:49 +02:00
Ricardo Wurmus 58a43fc28e
gnu: r-chipexoqual: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.8.0.
 2019-05-06 00:14:49 +02:00
Ricardo Wurmus 8d3d0c3abe
gnu: r-savr: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.22.0.
 2019-05-06 00:14:49 +02:00
Ricardo Wurmus 0aa72f2d1e
gnu: r-destiny: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 2.14.0.
[propagated-inputs]: Remove r-fnn and r-hmisc; add r-ggplot2.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus 6fc161fc3e
gnu: r-biocneighbors: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.2.0.
[propagated-inputs]: Add r-biocgenerics and r-rcpphnsw.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus d8771f5fd6
gnu: r-ruvseq: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.18.0.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus 774e499cec
gnu: r-dnabarcodes: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.14.0.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus 3649d046a6
gnu: r-inspect: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.14.0.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus 5dce71535f
gnu: r-plgem: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.56.0.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus 5bf7eb49f6
gnu: r-rots: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.12.0.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus 07252952b7
gnu: r-glimma: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.12.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus 40f0ee43a0
gnu: r-goseq: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.36.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus 7a5d729af1
gnu: r-ctc: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.58.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus 1236ce8e22
gnu: r-genomicinteractions: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus 176a264c7c
gnu: r-interactionset: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.12.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus eff6b2eb12
gnu: r-riboseqr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.18.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus 7d5acf7a25
gnu: r-riboprofiling: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.14.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus 1ddd4af5a0
gnu: r-chipcomp: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.14.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus c38de81594
gnu: r-bayseq: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.18.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus 4f4bed7de5
gnu: r-qdnaseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.20.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus 2317730994
gnu: r-cghcall: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.46.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus 8efb842f11
gnu: r-cghbase: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.44.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus bcb95b7aac
gnu: r-marray: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.62.0.
 2019-05-06 00:14:46 +02:00