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Author SHA1 Message Date
Marius Bakke 3cb61ca85a
Merge branch 'master' into staging 2019-03-23 22:50:07 +01:00
Marius Bakke 5e7e193b71
gnu: tdb: Update to 1.4.0. 
* gnu/packages/databases.scm (tdb): Update to 1.4.0.
 2019-03-23 22:43:59 +01:00
Marius Bakke 081850816f
Merge branch 'master' into staging 2019-03-21 23:18:54 +01:00
Ricardo Wurmus 0fa926c2e5
gnu: python-pyarrow: Update to 0.10.0. 
* gnu/packages/databases.scm (python-pyarrow): Update to 0.10.0.
[arguments]: Delete "build" phase.
[native-inputs]: Add python-pytest-runner.
 2019-03-18 23:46:27 +01:00
Ricardo Wurmus e58d3a5926
gnu: apache-arrow: Update to 0.10.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 0.10.0.
[inputs]: Replace jemalloc-4.5.0 with jemalloc.
 2019-03-18 23:46:27 +01:00
ng0 47956fa0c2
Correct name and email address for ng0. 
* .mailmap, Makefile.am, doc/guix.de.texi, doc/guix.fr.texi,
doc/guix.texi, etc/completion/fish/guix.fish,
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/enlightenment.scm, gnu/packages/erlang.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm,
gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm,
gnu/packages/guile-wm.scm,gnu/packages/guile-xyz.scm,
gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm,
gnu/packages/haskell.scm, gnu/packages/image-viewers.scm,
gnu/packages/image.scm, gnu/packages/irc.scm,
gnu/packages/language.scm, gnu/packages/libcanberra.scm,
gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm,
gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm,
gnu/packages/ncurses.scm, gnu/packages/networking.scm,
gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm, gnu/packages/python-xyz.scm,
gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm,
gnu/packages/rust.scm, gnu/packages/scheme.scm,
gnu/packages/serialization.scm, gnu/packages/shells.scm,
gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm,
gnu/packages/tor.scm, gnu/packages/version-control.scm,
gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm,
gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm:
Correct name and email address for ng0.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-03-18 15:05:08 +01:00
Leo Famulari e3900a4d64
build-system/go: Build with a filesystem union of Go dependencies. 
This basically changes (guix build-system go) so that instead of looking
up its dependencies in a list of directories in $GOPATH, all the
Go dependencies are symlinked into a single directory.

Fixes <https://bugs.gnu.org/33620>.

* guix/build/go-build-system.scm (setup-go-environment): New variable.
(setup-environment, install-source): Remove variables.
(unpack): Unpack the source relative to $GOPATH.
(install): Do not install the compiled objects in the 'pkg' directory.
Install the source code in this phase, and only install the source of
the package named by IMPORT-PATH.
* doc/guix.texi (Build Systems): Adjust accordingly.
* gnu/packages/docker.scm (docker): Import (guix build union) on the build side
and adjust to build phase name changes in (guix build-system go).
* gnu/packages/shellutils.scm (direnv): Likewise.
* gnu/packages/databases.scm (mongo-tools)[arguments]:
Set '#:install-source #f'.
* gnu/packages/music.scm (demlo)[arguments]: Move the 'install-scripts'
phase after the 'install' phase.
 2019-03-14 15:34:26 -04:00
Marius Bakke ebfe259f66
Merge branch 'master' into staging 2019-03-14 15:06:06 +01:00
Tobias Geerinckx-Rice 5cfe650b9d
gnu: python-sqlalchemy: Use HTTPS home page. 
* gnu/packages/databases.scm (python-sqlalchemy)[home-page]: Use HTTPS.
 2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice 6d04f694dc
gnu: python-sqlalchemy: Update to 1.3.1. 
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.3.1.
 2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice 909404b571
gnu: python-sql: Update to 1.0.0. 
* gnu/packages/databases.scm (python-sql): Update to 1.0.0.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice 99e690a59a
gnu: python-pyodbc: Update to 4.0.25. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.25.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice 72b7de49b4
gnu: python-psycopg2: Update to 2.7.7. 
* gnu/packages/databases.scm (python-psycopg2): Update to 2.7.7.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice d49bdbca5c
gnu: perl-dbd-sqlite: Update to 1.62. 
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.62.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice 49596a5413
gnu: perl-dbd-mysql: Update to 4.050. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.050.
 2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice 2f813be342
gnu: perl-sql-abstract: Update to 1.86. 
* gnu/packages/databases.scm (perl-sql-abstract): Update to 1.86.
 2019-03-12 02:22:33 +01:00
Marius Bakke 4f8dc1536a
Merge branch 'master' into staging 2019-03-04 22:31:59 +01:00
Marius Bakke 5ae458befc
gnu: rocksdb: Update to 5.18.3. 
* gnu/packages/databases.scm (rocksdb): Update to 5.18.3.
 2019-03-04 22:20:08 +01:00
Julien Lepiller 865c76ea3b
gnu: python-rq: Update to 0.13.0. 
* gnu/packages/databases.scm (python-rq): Update to 0.13.0.
 2019-03-04 21:52:33 +01:00
Julien Lepiller dcbe674c86
gnu: python-redis: Update to 3.2.0. 
* gnu/packages/databases.scm (python-redis): Update to 3.2.0.
 2019-03-04 21:52:17 +01:00
Marius Bakke 97dcedbd2a
gnu: tdb: Update to 1.3.18. 
* gnu/packages/databases.scm (tdb): Update to 1.3.18.
[native-inputs]: Add WHICH.  Change PYTHON-2 to PYTHON.
 2019-03-02 22:21:15 +01:00
Marius Bakke 19464173ba
Merge branch 'master' into staging 2019-03-01 17:33:00 +01:00
Tobias Geerinckx-Rice 4915894759
gnu: lmdb: Update to 0.9.23. 
* gnu/packages/databases.scm (lmdb): Update to 0.9.23.
 2019-02-27 15:48:53 +01:00
Tobias Geerinckx-Rice f167b432bb
gnu: lmdb: Don't use unstable tarball. 
* gnu/packages/databases.scm (lmdb)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
[arguments]: Adjust source directory name.
 2019-02-27 15:48:53 +01:00
Marius Bakke 2c76e19df4
Merge branch 'master' into staging 2019-02-20 17:01:39 +01:00
Tobias Geerinckx-Rice d84a20fb6b
gnu: memcached: Update to 1.5.12. 
* gnu/packages/databases.scm (memcached): Update to 1.5.12.
 2019-02-19 09:54:34 +01:00
Tobias Geerinckx-Rice 4cb2f29e3e
gnu: python-pymysql: Update to 0.9.3. 
* gnu/packages/databases.scm (python-pymysql): Update to 0.9.3.
 2019-02-19 09:53:41 +01:00
Tobias Geerinckx-Rice 2fc569a0fc
gnu: perl-db-file: Update to 1.843. 
* gnu/packages/databases.scm (perl-db-file): Update to 1.843.
 2019-02-19 09:53:41 +01:00
Marius Bakke 61506fe551
gnu: Remove unneeded uses of python{,2}-minimal. 
The "python-minimal" package exists mostly to resolve a dependency cycle.  To
reduce duplication, packages should prefer the regular Python variants.

* gnu/packages/admin.scm (htop)[native-inputs]: Change PYTHON-MINIMAL-WRAPPER
to PYTHON-WRAPPER.
* gnu/packages/crypto.scm (botan)[native-inputs]: Likewise.
* gnu/packages/bioinformatics.scm (sambamba)[native-inputs]: Change
PYTHON-MINIMAL to PYTHON.
* gnu/packages/dictionaries.scm (apertium)[native-inputs]: Likewise.
* gnu/packages/databases.scm (mongodb)[native-inputs]: Change PYTHON2-MINIMAL
to PYTHON2.
* gnu/packages/games.scm (openttd-opensfx, openttd-openmsx)[native-inputs]:
Likewise.
* gnu/packages/gnome.scm (deja-dup)[native-inputs]: Likewise.
 2019-02-17 18:44:18 +01:00
Leo Famulari 42ce9187fb
gnu: PostgreSQL 9.6: Update to 9.6.12. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.12.
 2019-02-14 14:46:32 -05:00
Leo Famulari 2950d33c6c
gnu: PostgreSQL: Update to 10.7. 
* gnu/packages/databases.scm (postgresql): Update to 10.7.
 2019-02-14 14:46:28 -05:00
Marius Bakke 6901878894
Merge branch 'master' into staging 2019-02-14 00:20:28 +01:00
Tobias Geerinckx-Rice da93d42413
gnu: perl-dbi: Update to 1.642. 
* gnu/packages/databases.scm (perl-dbi): Update to 1.642.
 2019-02-12 17:38:21 +01:00
Tobias Geerinckx-Rice 245e7a68e7
gnu: kyotocabinet: Update to 1.2.77. 
* gnu/packages/databases.scm (kyotocabinet): Update to 1.2.77.
 2019-02-12 17:38:21 +01:00
Christopher Baines 8b7e6d005e
gnu: postgresql: Build with openssl support. 
* gnu/packages/databases.scm (postgresql)[arguments]: Add --with-openssl to
[inputs]: Add openssl.
 2019-02-11 09:52:08 +00:00
Marius Bakke 0ce64334e6
gnu: mariadb: Update to 10.1.38. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.38.
 2019-02-10 21:04:23 +01:00
Marius Bakke 69fb26d4f5
gnu: mariadb: Add comments about failing tests. 
* gnu/packages/databases.scm (mariadb): Add comments.
 2019-02-06 23:30:34 +01:00
Marius Bakke 0747328e31
Merge branch 'master' into staging 2019-01-31 23:32:56 +01:00
Ricardo Wurmus aeec4a8fc1
gnu: python-sqlalchemy: Use PYPI-URI. 
* gnu/packages/databases.scm (python-sqlalchemy)[source]: Use PYPI-URI.
 2019-01-25 23:18:55 +01:00
Carl Dong 38f77be464
gnu: mariadb: Disable sporadically failing tests. 
* guix/packages/databases.scm: Disable sporadically failing tests.

Signed-off-by: Eric Bavier <bavier@member.fsf.org>
 2019-01-22 21:42:52 -06:00
Ludovic Courtès 3e2d4e69c3
Merge branch 'master' into staging 2019-01-20 22:12:10 +01:00
Ricardo Wurmus 255d1bbe77
gnu: Move dbm databases to new module. 
* gnu/packages/databases.scm (gdbm, bdb, bdb-5.3): Move from here...
* gnu/packages/dbm.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/audio.scm,
gnu/packages/avahi.scm,
gnu/packages/backup.scm,
gnu/packages/cobol.scm,
gnu/packages/cyrus-sasl.scm,
gnu/packages/databases.scm,
gnu/packages/finance.scm,
gnu/packages/game-development.scm,
gnu/packages/gnome.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/linux.scm,
gnu/packages/mail.scm,
gnu/packages/man.scm,
gnu/packages/nvi.scm,
gnu/packages/openldap.scm,
gnu/packages/package-management.scm,
gnu/packages/php.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/sawfish.scm: Update module references.
 2019-01-16 16:08:22 +01:00
Ricardo Wurmus cd0322a3ef
gnu: Move sqlite to separate module. 
* gnu/packages/databases.scm (sqlite, sqlite-3.26.0, sqlite-with-fts5,
sqlite-with-column-metadata): Move variables from here...
* gnu/packages/sqlite.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/apl.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/code.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/dc.scm,
gnu/packages/disk.scm,
gnu/packages/ebook.scm,
gnu/packages/education.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/file-systems.scm,
gnu/packages/freedesktop.scm,
gnu/packages/ftp.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gnome.scm,
gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/gps.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/kodi.scm,
gnu/packages/lisp.scm,
gnu/packages/mail.scm,
gnu/packages/messaging.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nfs.scm,
gnu/packages/ocaml.scm,
gnu/packages/package-management.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/php.scm,
gnu/packages/python.scm,
gnu/packages/qt.scm,
gnu/packages/ruby.scm,
gnu/packages/scheme.scm,
gnu/packages/sync.scm,
gnu/packages/syndication.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/web-browsers.scm,
gnu/packages/webkit.scm: Adjust module references.
 2019-01-16 16:08:22 +01:00
Ricardo Wurmus 44d10b1f72
gnu: Separate Python core packages from the rest. 
* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
 2019-01-15 14:46:44 +01:00
Efraim Flashner 0e28967250
Merge remote-tracking branch 'origin/master' into staging 2019-01-09 10:52:41 +02:00
Ricardo Wurmus d9bec9a87b
gnu: r-rmysql: Move from databases.scm to cran.scm 
* gnu/packages/databases.scm (r-rmysql): Move from here...
* gnu/packages/cran.scm (r-rmysql): ...to here.
 2019-01-07 15:55:06 +01:00
Efraim Flashner c007e35d24
gnu: recutils: Update to 1.8. 
* gnu/packages/databases.scm (recutils): Update to 1.8.
[source]: Remove snippet.
[arguments]: Remove custom 'set-bash4.4-header-location phase. Enable
parallel tests.
[inputs]: Move check ...
[native-inputs]: ... to here. Add pkg-config.
 2019-01-06 15:42:06 +02:00
Marius Bakke f30830b2e6
Merge branch 'master' into staging 2018-12-22 15:26:30 +01:00
Alex Vong 38abef124b
gnu: sqlite: Replace with 3.26.0 [security fixes]. 
Fixes <https://bugs.gnu.org/33751>.
Reported by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/databases.scm (sqlite-3.26.0): New public variable.
(sqlite)[replacement]: Use it.
(sqlite-with-fts5): Use 'package/inherit'.
(sqlite-with-column-metadata): Likewise.

Modified-by: Mark H Weaver <mhw@netris.org>
 2018-12-18 20:20:16 -05:00
Marius Bakke fbb7b04a85
Merge branch 'master' into staging 2018-12-09 00:18:32 +01:00
Christopher Baines fe5969656a
gnu: mongo-tools: Fix build. 
I guess this broke when upgrading go. I did try upgrading to the later patch
and minor releases, but they had similar problems, so lets upgrade separately.

* gnu/packages/databases.scm (mongo-tools)[arguments]: Add patch-source phase.
 2018-12-04 20:27:04 +00:00
Marius Bakke 99f63f011d
Merge branch 'master' into staging 2018-12-03 19:15:17 +01:00
Marius Bakke 25ca46985c
Merge branch 'master' into core-updates 2018-11-29 15:56:49 +01:00
Brett Gilio 682c291899
gnu: sqlcipher: Update to 3.4.2. 
* gnu/packages/databases.scm (sqlcipher): Update to 3.4.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-24 22:40:46 +01:00
Marius Bakke 52b24ba495
gnu: mariadb: Update to 10.1.37 [security fixes]. 
This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156,
and CVE-2018-3251.  See
<https://mariadb.com/kb/en/library/mariadb-10137-release-notes/> for details.

* gnu/packages/databases.scm (mariadb): Update to 10.1.37.
 2018-11-24 02:03:12 +01:00
Mark H Weaver 96272e2822
gnu: databases: Return #t from all phases. 
* gnu/packages/databases.scm (4store, go-gopkg.in-mgo.v2, mongodb)
(sparql-query, tdb, sqlcipher, python-sqlparse, mongo-tools): Return #t from
all phases, use invoke where appropriate, and remove vestigial plumbing.
 2018-11-14 23:44:16 -05:00
Marius Bakke 79ee97a144
Merge branch 'master' into core-updates 2018-11-14 21:20:46 +01:00
Leo Famulari ec35067631
gnu: PostgreSQL: Update to 10.6 [fixes CVE-2018-16850]. 
* gnu/packages/databases.scm (postgresql): Update to 10.6.
 2018-11-11 14:10:03 -05:00
Efraim Flashner 22d04ceda0
gnu: python-rq: Update to 0.12.0. 
* gnu/packages/databases.scm (python-rq): Update to 0.12.0.
 2018-11-11 11:54:28 +02:00
Efraim Flashner c92d056a8b
gnu: python-alembic: Update to 1.0.2. 
* gnu/packages/databases.scm (python-alembic, python2-alembic): Update
to 1.0.2.
 2018-11-11 11:13:53 +02:00
Ricardo Wurmus f1f1cebdd3
gnu: mdbtools: Fetch sources from git. 
* gnu/packages/databases.scm (mdbtools)[source]: Fetch from git.
 2018-11-11 10:09:54 +01:00
Ricardo Wurmus f626b71923
gnu: mdbtools: Remove custom bootstrap phase. 
* gnu/packages/databases.scm (mdbtools)[arguments]: Remove.
 2018-11-11 10:05:56 +01:00
Marius Bakke 64461ba20a
Merge branch 'master' into core-updates 2018-11-09 17:02:08 +01:00
Leo Famulari 41d2b7f50b
gnu: PostgreSQL 9: Update to 9.6.11 [fixes CVE-2018-16850]. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.11.
 2018-11-08 13:42:56 -05:00
Marius Bakke e2568df74e
gnu: rocksdb: Update to 5.15.10. 
* gnu/packages/databases.scm (rocksdb): Update to 5.15.10.
 2018-11-07 16:06:56 +01:00
Marius Bakke 8dd3665883
gnu: rocksdb: Don't use unstable tarball. 
* gnu/packages/databases.scm (rocksdb)[source]: Use GIT-FETCH.
 2018-11-07 16:06:56 +01:00
Marius Bakke f4a5faa9dc
Merge branch 'master' into core-updates 2018-11-05 23:56:22 +01:00
Efraim Flashner d28af1991a
gnu: qt: Use system sqlite. 
* gnu/packages/databases.scm (sqlite-with-column-metadata): New
variable.
* gnu/packages/qt.scm (qt, qtbase)[source]: Remove bundled sqlite.
[inputs]: Add sqlite-with-column-metadata.
[arguments]: Add configure-flag to use system sqlite.
 2018-10-28 09:51:25 +02:00
Tobias Geerinckx-Rice d9bcdfce29
gnu: mongodb: Use INVOKE. 
* gnu/packages/databases.scm (mongodb)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-10-24 04:56:23 +02:00
Marius Bakke ffddb42d6c
Merge branch 'master' into core-updates 2018-10-21 18:06:02 +02:00
Amirouche b1e6b93805
gnu: guile-wiredtiger: Update to 0.7.0. 
* gnu/packages/databases.scm (guile-wiredtiger): Update to 0.7.0.
[inputs]: Replace wiredtiger with wiredtiger-3
[propagated-inputs]: Remove guile-lib, add guile-bytestructures
[description]: Update it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-19 18:28:57 +02:00
Amirouche 4680fef705
gnu: Add wiredtiger 3.1.0 
* gnu/packages/databases.scm (wiredtiger-3): New variable that inherits from
  wiredtiger

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-19 18:28:57 +02:00
Marius Bakke d02bb02f7d
Merge branch 'master' into core-updates 2018-10-17 20:47:11 +02:00
Tobias Geerinckx-Rice f825faa502
gnu: python-pickleshare: Update to 0.7.5. 
* gnu/packages/databases.scm (python-pickleshare): Update to 0.7.5.
 2018-10-10 23:49:13 +02:00
Marius Bakke cf6db76d2a
Merge branch 'master' into core-updates 2018-10-05 19:15:39 +02:00
Julien Lepiller c336567dad
gnu: postgresql: Fix finding extensions. 
* gnu/packages/patches/postgresql-disable-resolve_symlinks.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (postgresql)[source]: Use it.
 2018-10-04 22:26:02 +02:00
Ludovic Courtès 944a3a8b8e
gnu: recutils: Adjust Gnulib to libc 2.28. 
Fixes <https://bugs.gnu.org/32776>.

* gnu/packages/databases.scm (recutils)[modules, snippet]: New fields.
 2018-10-03 15:23:56 +02:00
Tobias Geerinckx-Rice a4764ff00a
gnu: python-fakeredis: Edit description. 
* gnu/packages/databases.scm (python-fakeredis)[description]:
Fix (upstream) typo. Get carried away.
 2018-09-28 00:01:43 +02:00
Marius Bakke 6a0427af6c
Merge branch 'master' into core-updates 2018-09-26 01:11:32 +02:00
Tobias Geerinckx-Rice eeecbe09cc
gnu: perl-dbd-mysql: Update to 4.048. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.048.
 2018-09-21 10:25:31 +02:00
Leo Famulari d763940711
Merge branch 'master' into core-updates 2018-09-13 13:32:39 -04:00
Tobias Geerinckx-Rice 702a87f2d1
gnu: perl-dbd-mysql: Update to 4.047. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.047.
[arguments]: Add 'skip-library-detection' phase.
 2018-09-11 21:03:07 +02:00
Marius Bakke 4333d48a82
gnu: mariadb: Move unbundle substitutions to source snippet. 
* gnu/packages/databases.scm (mariadb)[source](snippet): Add two substitutions
from ...
[arguments]: The 'unbundle' phase here.  Rename to 'fix-pcre-detection.
 2018-09-09 17:59:37 +02:00
Marius Bakke 1d957c79b6
gnu: mariadb: Update to 10.1.36. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.36.
[arguments]: Disable one new test.
 2018-09-09 17:59:36 +02:00
Marius Bakke 839167ff9d
Merge branch 'staging' into core-updates 2018-08-25 16:44:07 +02:00
Marius Bakke 173d291466
Merge branch 'master' into staging 2018-08-25 16:38:51 +02:00
Ludovic Courtès 444488fc1b
gnu: boost: Move 1.59.0 definition to boost.scm. 
Fixes a regression introduced in commit
7cbf06d8c2 where the top-level code of
these two modules would depend on each other, leading to "boost: unbound
variable" kind of errors in some circumstances.

* gnu/packages/databases.scm (boost-for-mysql): Move to...
* gnu/packages/boost.scm (boost-for-mysql): ... here.  Make public and
add 'properties' field.
 2018-08-24 00:36:04 +02:00
Leo Famulari 58927996d9
gnu: perl-dbd-mysql: Update to 4.046. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046.
[source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'.
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-22 15:40:08 -04:00
Marius Bakke 233df51ebc
Merge branch 'master' into staging 2018-08-22 18:14:04 +02:00
Marius Bakke fb76ef8477
gnu: Remove GCC ICE workarounds. 
* gnu/packages/patches/doxygen-gcc-ice.patch,
gnu/packages/patches/mariadb-gcc-ice.patch,
gnu/packages/patches/perf-gcc-ice.patch: Delete files
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/databases.scm (mariadb)[source](patches): Likewise.
* gnu/packages/linux.scm (perf)[source](patches): Likewise.
* gnu/packages/documentation.scm (doxygen)[inputs, arguments]: Likewise.
 2018-08-22 18:01:09 +02:00
Marius Bakke 43cec3fb1e
gnu: mariadb: Remove huge mysql_embedded executable. 
* gnu/packages/databases.scm (mariadb)[arguments]: Adjust deletion regex.
 2018-08-22 17:52:40 +02:00
Marius Bakke 22f5c07624
gnu: mariadb: Propagate OpenSSL. 
* gnu/packages/databases.scm (mariadb)[inputs]: Move OPENSSL ...
[propagated-inputs]: ... here.
(r-rmysql)[inputs]: Remove OPENSSL.
 2018-08-22 17:50:07 +02:00
Tobias Geerinckx-Rice 311f06c94a
gnu: Add sqlcrush. 
* gnu/packages/databases.smc (sqlcrush): New public variable.
 2018-08-22 00:03:43 +02:00
Tobias Geerinckx-Rice 9763102bd7
gnu: Add python-pymysql. 
* gnu/packages/databases.scm (python-pymysql, python2-pymysql): New
public variables.
 2018-08-22 00:03:43 +02:00
Marius Bakke fdb222033c
gnu: gdbm: Update to 1.18. 
* gnu/packages/databases.scm (gdbm): Update to 1.18.
 2018-08-21 17:25:23 +02:00
Marius Bakke 2be1b754ba
gnu: python-sqlalchemy: Update to 1.2.11. 
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.2.11.
 2018-08-21 17:24:30 +02:00
Marius Bakke 9871a896aa
gnu: python-sqlalchemy: Use 'invoke'. 
* gnu/packages/databases.scm (python-sqlalchemy)[arguments]: Use INVOKE
instead of SYSTEM*.
 2018-08-21 17:24:30 +02:00
Tobias Geerinckx-Rice 8327ffcc7f
gnu: unixodbc: Update to 2.3.7. 
* gnu/packages/databases.scm (unixodbc): Update to 2.3.7.
 2018-08-21 07:04:05 +02:00
Tobias Geerinckx-Rice 8ecf3f7ea5
gnu: mysql: Update to 5.7.23. 
* gnu/packages/databases.scm (mysql): Update to 5.7.23.
 2018-08-20 20:17:20 +02:00
Tobias Geerinckx-Rice 7cbf06d8c2
gnu: mysql: Fix build. 
MySQL demands boost@1.59.0, and lying about it no longer works:

sql/item_geofunc_internal.cc: In function ‘void handle_gis_exception(const char*)’:
sql/item_geofunc_internal.cc:37:81: error: expected unqualified-id before ‘&’ token
   catch (const boost::geometry::detail::self_get_turn_points::self_ip_exception &)
                                                                                 ^
[...]

* gnu/packages/databases.scm (boost-for-mysql): New variable.
(mysql)[inputs]: Use that instead of the regular boost.
[arguments]: Remove now-unnecessary ‘patch-boost-version’ phase.
 2018-08-20 20:17:20 +02:00