Commit Graph

31340 Commits (c784ffa0c46a822cdacda4b480f131276b86c924)

Author SHA1 Message Date
Marius Bakke e921993c25
gnu: xf86-video-r128: Update to 6.12.0.
* gnu/packages/xorg.scm (xf86-video-r128): Update to 6.12.0.
2018-11-14 21:05:30 +01:00
Marius Bakke 24dd6ec38a
gnu: mtools: Update to 4.0.20.
* gnu/packages/mtools.scm (mtools): Update to 4.0.20.
[source](uri): Change to 'bz2' compressed tarball.
2018-11-14 21:05:30 +01:00
Marius Bakke 7939387da8
gnu: nano: Update to 3.2.
* gnu/packages/nano.scm (nano): Update to 3.2.
2018-11-14 21:05:30 +01:00
Marius Bakke d63f588486
gnu: sudo: Update to 1.8.26.
* gnu/packages/admin.scm (sudo): Update to 1.8.26.
2018-11-14 21:05:30 +01:00
Marius Bakke bac2974e86
gnu: feh: Update to 3.0.
* gnu/packages/image-viewers.scm (feh): Update to 3.0.
2018-11-14 21:05:30 +01:00
Ricardo Wurmus ee66a13563
gnu: Add jamm.
* gnu/packages/bioinformatics.scm (jamm): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus e4f4a04a51
gnu: Add r-ouch.
* gnu/packages/cran.scm (r-ouch): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus 10483a64ee
gnu: Add r-activity.
* gnu/packages/cran.scm (r-activity): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus 3cef715a46
gnu: Add r-circular.
* gnu/packages/cran.scm (r-circular): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus 08bf097a0b
gnu: Add r-overlap.
* gnu/packages/cran.scm (r-overlap): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus acbf23da44
gnu: Add r-acdm.
* gnu/packages/cran.scm (r-acdm): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus ffdeda3ce0
gnu: Add r-acd.
* gnu/packages/cran.scm (r-acd): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus 488dc4e1e2
gnu: Add r-abn.
* gnu/packages/cran.scm (r-abn): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus 0c92f3734e
gnu: Add r-rjags.
* gnu/packages/cran.scm (r-rjags): New variable.
2018-11-14 15:13:20 +01:00
Ricardo Wurmus 0bca8643a2
gnu: Add jags.
* gnu/packages/statistics.scm (jags): New variable.
2018-11-14 15:13:17 +01:00
Ricardo Wurmus 51b262f310
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.4.
* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Update to 3.4.4.
2018-11-13 23:34:40 +01:00
Ricardo Wurmus d34959b8d4
gnu: r-org-mm-eg-db: Update to 3.7.0.
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.7.0.
2018-11-13 23:34:40 +01:00
Ricardo Wurmus 314511b862
gnu: r-org-dm-eg-db: Update to 3.7.0.
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.7.0.
2018-11-13 23:34:39 +01:00
Ricardo Wurmus 76bd16bcf6
gnu: r-org-ce-eg-db: Update to 3.7.0.
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.7.0.
2018-11-13 23:34:39 +01:00
Ricardo Wurmus fc7683fa30
gnu: r-org-hs-eg-db: Update to 3.7.0.
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.7.0.
2018-11-13 23:34:39 +01:00
Ricardo Wurmus cb9e6ed702
gnu: r-genomationdata: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.14.0.
2018-11-13 23:34:39 +01:00
Ricardo Wurmus 13e70f6304
gnu: r-go-db: Update to 3.7.0.
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.7.0.
2018-11-13 23:34:39 +01:00
Ricardo Wurmus 13a574652b
gnu: r-genomeinfodbdata: Update to 1.2.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.2.0.
2018-11-13 23:34:39 +01:00
Taegil Bae 3f995aaf21
gnu: spice-vdagent: Fix typo in desktop file.
Fixes <https://bugs.gnu.org/33346>.

* gnu/packages/spice.scm (spice-vdagent)[arguments]: Fix typo in
'patch-spice-vdagent.desktop' phase.
2018-11-13 15:26:30 -05:00
Alex Vong c991806a7d
gnu: ImageMagick: Update to 6.9.10-14.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-14.
2018-11-14 03:09:37 +08:00
Leo Famulari d540137509
gnu: libssh: Fetch source over HTTPS.
* gnu/packages/ssh.scm (libssh)[source]: Use HTTPS URL.
2018-11-13 11:43:35 -05:00
Leo Famulari 978d59737a
gnu: direnv: Build with Go 1.9.
* gnu/packages/shellutils.scm (direnv)[native-inputs]: Remove go.
[inputs]: Add go-1.9.
2018-11-13 11:28:23 -05:00
Leo Famulari 021bf6af18
gnu: Poppler: Fix CVE-2018-19149.
* gnu/packages/patches/poppler-CVE-2018-19149.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
(poppler-qt4, poppler-qt5): Use package/inherit.
2018-11-13 11:28:23 -05:00
Leo Famulari 8263b9f71f
gnu: certbot, python-acme: Update to 0.28.0.
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.28.0.
2018-11-13 10:10:42 -05:00
Ludovic Courtès 3483f82413
gnu: guix: Update to f5a2724.
* gnu/packages/package-management.scm (guix): Update to f5a2724.
2018-11-13 15:44:25 +01:00
Ludovic Courtès d3f75179e5
services: nscd: Add 'invalidate' and 'statistics' actions.
* gnu/services/base.scm (nscd-action-procedure, nscd-actions): New
procedures.
(nscd-shepherd-service): Add 'modules' and 'actions' fields.
* gnu/tests/base.scm (run-basic-test)["nscd invalidate action"]
["nscd invalidate action, wrong table"]: New tests.
* doc/guix.texi (Services): Mention 'herd doc nscd action'.
(Base Services): Document the actions.
2018-11-13 14:59:45 +01:00
Ludovic Courtès 190877748e
services: mcron: Fix typo in comment.
* gnu/services/mcron.scm (shepherd-schedule-action): Fix typo in comment.
2018-11-13 14:59:45 +01:00
Oleg Pykhalov 155956449a
gnu: restic: Fix build phase.
* gnu/packages/backup.scm (restic)[arguments]: Set "HOME" environment variable
in build phase.
2018-11-13 15:03:15 +03:00
Ricardo Wurmus 6018683683
gnu: c-toxcore: Fetch sources from git.
* gnu/packages/messaging.scm (c-toxcore)[source]: Fetch from git.
2018-11-13 10:51:41 +01:00
Rutger Helling 7fed5481fe
gnu: wine-staging: Update to 3.20.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.20.
* gnu/packages/wine.scm (wine-staging): Update to 3.20.
2018-11-13 10:24:42 +01:00
Julien Lepiller 0dd60c1c9b
gnu: php: Update to 7.2.12.
* gnu/packages/php.scm (php): Update to 7.2.12.
2018-11-12 23:57:42 +01:00
Arun Isaac e740a90228
gnu: youtube-dl: Update to 2018.11.07.
* gnu/packages/video.scm (youtube-dl): Update to 2018.11.07.
2018-11-12 22:09:12 +05:30
Efraim Flashner 53bcee9ea7
gnu: vifm: Update to 0.10.
* gnu/packages/vim.scm (vifm): Update to 0.10.
2018-11-12 12:37:00 +02:00
Pierre Neidhardt 5c4758415d
gnu: go-github-com-aarzilli-golua: Fix for go-1.11.
* gnu/packages/golang.scm (go-github-com-aarzilli-golua)[arguments]: Fix for go-1.11.
[native-inputs]: Remove lua.
[propagated-inputs]: Add lua.
2018-11-12 10:31:23 +01:00
Pierre Neidhardt 46a4ae2212
gnu: go-github-com-wtolson-go-taglib: Fix tests and build for go-1.11.
* gnu/packages/golang.scm (go-github-com-wtolson-go-taglib)[arguments]: Fix tests for go-1.11.
[native-inputs]: Remove pkg-config and taglib.
[propagated-inputs]: Add pkg-config and taglib.
2018-11-12 10:30:10 +01:00
Pierre Neidhardt 66fa8f0f77
gnu: go-gopkg.in-asn1-ber.v1: Fix tests for go-1.11.
* gnu/packages/syncthing.scm (go-gopkg.in-asn1-ber.v1): Fix tests for go-1.11.
2018-11-12 10:29:43 +01:00
Pierre Neidhardt d4780c8238
gnu: go-github-com-audriusbutkevicius-cli: Fix tests for go-1.11.
* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-cli): Fix tests for go-1.11.
2018-11-12 10:29:37 +01:00
Pierre Neidhardt 46a37b5966
gnu: go-github-com-prometheus-common-expfmt: Fix tests for go-1.11.
* gnu/packages/syncthing.scm (go-github-com-prometheus-common-expfmt): Fix tests for go-1.11.
2018-11-12 10:29:31 +01:00
Pierre Neidhardt 9a65a05201
gnu: go: Update default to 1.11.
* gnu/packages/golang.scm (go): Update default to 1.11.
2018-11-12 10:28:46 +01:00
Ricardo Wurmus 5f9b38ba34
gnu: r-s4vectors: Update to 0.20.1.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.20.1.
2018-11-11 23:13:48 +01:00
Ricardo Wurmus 06910a8689
gnu: r-rcmdcheck: Update to 1.3.2.
* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.2.
2018-11-11 23:13:48 +01:00
Ricardo Wurmus 2a4c5877a9
gnu: r-ggpubr: Update to 0.1.9.
* gnu/packages/cran.scm (r-ggpubr): Update to 0.1.9.
2018-11-11 23:13:48 +01:00
Ricardo Wurmus 441cf11de1
gnu: r-dplyr: Update to 0.7.8.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.8.
2018-11-11 23:13:48 +01:00
Ricardo Wurmus 41d2c26e67
gnu: r-rcpparmadillo: Update to 0.9.200.4.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.4.0.
2018-11-11 23:13:48 +01:00
Ricardo Wurmus 23dd886a95
gnu: r-rtsne: Update to 0.15.
* gnu/packages/statistics.scm (r-rtsne): Update to 0.15.
2018-11-11 23:13:48 +01:00
Ricardo Wurmus 7865c8c460
gnu: r-lme4: Update to 1.1-19.
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-19.
2018-11-11 23:13:48 +01:00
Marius Bakke a509b18087
gnu: webkitgtk@2.22: Adjust to documentation output.
This is a follow-up to commit 0ead0b4d2c.

* gnu/packages/webkit.scm (webkitgtk)[arguments]: Remove hard coded file list.
(webkitgtk-2.22)[arguments]: Inherit phases using SUBSTITUTE-KEYWORD-ARGUMENTS.
2018-11-11 22:47:06 +01:00
Ricardo Wurmus aaf0e47f6d
gnu: libtoxcore: Update to 0.0.0-2.bf69b54.
* gnu/packages/messaging.scm (libtoxcore): Update to 0.0.0-2.bf69b54.
[native-inputs]: Add check.
2018-11-11 20:51:51 +01:00
Ricardo Wurmus e874f34d3f
gnu: mumi: Update to 0.0.0-2.bfd96ce7.
* gnu/packages/mail.scm (mumi): Update to 0.0.0-2.bfd96ce7.
2018-11-11 20:51:51 +01:00
Leo Famulari ec35067631
gnu: PostgreSQL: Update to 10.6 [fixes CVE-2018-16850].
* gnu/packages/databases.scm (postgresql): Update to 10.6.
2018-11-11 14:10:03 -05:00
Pierre Neidhardt 0ead0b4d2c
gnu: webkitgtk: Include documentation.
* gnu/packages/webkit.scm (webkitgtk): Include documentation.
2018-11-11 16:44:46 +01:00
Pierre Neidhardt 50ee7e93fc
gnu: gtk-doc: Use local docbook-xsl.
* gnu/packages/gtk.scm (gtk-doc): Use local docbook-xsl.
2018-11-11 16:41:45 +01:00
Ricardo Wurmus 89c7894805
gnu: faust-2: Update to 2.5.23.
* gnu/packages/audio.scm (faust-2): Update to 2.5.23.
[native-inputs]: Replace llvm-with-rtti with llvm-3.8-with-rtti.
* gnu/packages/llvm.scm (llvm-with-rtti): Rename this variable...
(llvm-3.8-with-rtti): ...to this variable; inherit from llvm-3.8.
2018-11-11 16:19:59 +01:00
Clément Lassieur 37a350ecce
gnu: gajim: Move python-docutils from inputs to native-inputs.
* gnu/packages/messaging.scm (gajim): Move python-docutils from inputs to
native-inputs.
2018-11-11 16:00:08 +01:00
Clément Lassieur 60c5b44489
gnu: gajim: Get the second 'wrap-program' phase to return #t.
* gnu/packages/messaging.scm (gajim)[arguments]: Get the second 'wrap-program'
phase to return #t.
2018-11-11 16:00:00 +01:00
Clément Lassieur 992a496503
gnu: gajim: Update to 1.1.0.
* gnu/packages/messaging.scm (gajim): Update to 1.1.0.
[arguments]: Set #:test-target to "test_nogui".  Remove the
'remove-test-resolver' and 'start-xserver' phases.
[inputs]: Remove python-pyasn1.  Add python-cssutils, python-keyring and
python-precis-i18n.
2018-11-11 15:59:07 +01:00
Clément Lassieur a311f42e1b
gnu: python-nbxmpp: Update to 0.6.8.
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.8.
2018-11-11 15:59:03 +01:00
Clément Lassieur 4ad3786b7b
gnu: Add python-precis-i18n.
* gnu/packages/messaging.scm (python-precis-i18n): New variable.
2018-11-11 15:58:50 +01:00
Ricardo Wurmus 902068b436
gnu: tiled: Fetch sources from git.
* gnu/packages/game-development.scm (tiled)[source]: Fetch from git.
2018-11-11 13:18:27 +01:00
Ricardo Wurmus 9066424778
gnu: privoxy: Remove custom bootstrap phase.
* gnu/packages/tor.scm (privoxy)[arguments]: Remove autoconf phase.
2018-11-11 13:10:56 +01:00
Ricardo Wurmus 2b61cd37b4
gnu: cifs-utils: Remove autoreconf phase.
* gnu/packages/samba.scm (cifs-utils)[arguments]: Remove autoreconf phase.
2018-11-11 13:08:56 +01:00
Ricardo Wurmus cd1f661e82
gnu: libiax2: Fetch sources from git.
* gnu/packages/telephony.scm (libiax2)[source]: Fetch from git.
2018-11-11 13:06:31 +01:00
Ricardo Wurmus 5a103bb84e
gnu: libiax2: Remove custom bootstrap phase.
* gnu/packages/telephony.scm (libiax2)[arguments]: Remove.
2018-11-11 13:04:08 +01:00
Ricardo Wurmus 6f3dd09f8d
gnu: libharu: Remove custom bootstrap phase.
* gnu/packages/pdf.scm (libharu)[arguments]: Remove autogen phase.
2018-11-11 13:00:53 +01:00
Ricardo Wurmus 2b2ab39cfc
gnu: libharu: Fetch sources from git.
* gnu/packages/pdf.scm (libharu)[source]: Fetch from git.
2018-11-11 13:00:35 +01:00
Ricardo Wurmus bc74e9e4cd
gnu: scsh: Remove custom bootstrap phase.
* gnu/packages/shells.scm (scsh)[arguments]: Remove autoreconf phase.
2018-11-11 12:56:22 +01:00
Ricardo Wurmus e5ff963a6d
gnu: xdelta: Remove custom bootstrap phase.
* gnu/packages/compression.scm (xdelta)[arguments]: Remove autoconf phase.
2018-11-11 12:52:46 +01:00
Ricardo Wurmus 0633c77b1b
gnu: xdelta: Fetch sources from git.
* gnu/packages/compression.scm (xdelta)[source]: Fetch from git.
2018-11-11 12:52:30 +01:00
Ricardo Wurmus 112fcafbae
gnu: libtar: Remove custom bootstrap phase.
* gnu/packages/compression.scm (libtar)[arguments]: Remove autoconf phase.
2018-11-11 12:47:51 +01:00
Ricardo Wurmus 3478945948
gnu: minizip: Remove custom bootstrap phase.
* gnu/packages/compression.scm (minizip)[arguments]: Remove autoreconf phase.
2018-11-11 12:45:52 +01:00
Ricardo Wurmus 4078beab93
gnu: inotify-tools: Remove custom bootstrap phase.
* gnu/packages/linux.scm (inotify-tools)[arguments]: Remove.
2018-11-11 12:36:35 +01:00
Ricardo Wurmus 88f9fea723
gnu: inotify-tools: Fetch sources from git.
* gnu/packages/linux.scm (inotify-tools)[source]: Fetch from git.
2018-11-11 12:36:15 +01:00
Ricardo Wurmus 2286107f60
gnu: par2cmdline: Remove custom bootstrap phase.
* gnu/packages/backup.scm (par2cmdline)[arguments]: Remove.
2018-11-11 12:31:35 +01:00
Ricardo Wurmus 5cdbdc2b13
gnu: par2cmdline: Fetch sources from git.
* gnu/packages/backup.scm (par2cmdline)[source]: Fetch from git.
2018-11-11 12:31:18 +01:00
Ricardo Wurmus 2fef54fd64
gnu: hpcguix-web: Do not re-bootstrap.
* gnu/packages/web.scm (hpcguix-web)[arguments]: Do not run autoreconf after
the bootstrap phase; remove "autoconf" phase to "set-variables"; end phase
with #T.
2018-11-11 12:27:01 +01:00
Ricardo Wurmus cbb6a15056
gnu: schismtracker: Remove custom bootstrap phase.
* gnu/packages/music.scm (schismtracker)[arguments]: Remove autoconf phase.
2018-11-11 12:19:23 +01:00
Ricardo Wurmus 8865973848
gnu: lilypond: Use INVOKE.
* gnu/packages/music.scm (lilypond)[arguments]: Use INVOKE and return #T
unconditionally.
2018-11-11 12:15:03 +01:00
Ricardo Wurmus 3b9e9415fa
gnu: schismtracker: Fetch sources from git.
* gnu/packages/music.scm (schismtracker)[source]: Fetch from git.
2018-11-11 12:07:21 +01:00
Ricardo Wurmus 234a1825b2
gnu: clyrics: Fetch sources from git.
* gnu/packages/music.scm (clyrics)[source]: Fetch from git.
[native-inputs]: Remove.
[arguments]: Adjust builder.
2018-11-11 12:01:25 +01:00
Ricardo Wurmus 3a0592ae31
gnu: lmms: Fetch sources from git.
* gnu/packages/music.scm (lmms)[source]: Fetch from git.
2018-11-11 12:00:55 +01:00
Ricardo Wurmus caa39e56f7
gnu: milkytracker: Fetch sources from git.
* gnu/packages/music.scm (milkytracker)[source]: Fetch from git.
2018-11-11 11:44:24 +01:00
Ricardo Wurmus 08bc7f2665
gnu: dotconf: Fetch sources from git.
* gnu/packages/textutils.scm (dotconf)[source]: Fetch from git.
2018-11-11 11:37:01 +01:00
Ricardo Wurmus 7a52d0e075
gnu: dotconf: Remove custom bootstrap phase.
* gnu/packages/textutils.scm (dotconf)[arguments]: Remove autoreconf phase.
2018-11-11 11:36:39 +01:00
Ricardo Wurmus d68a15806b
gnu: libgtextutils: Remove custom bootstrap phase.
* gnu/packages/textutils.scm (libgtextutils)[arguments]: Remove.
2018-11-11 11:34:55 +01:00
Ricardo Wurmus fab455840e
gnu: libtoxcore: Remove custom bootstrap phase.
* gnu/packages/messaging.scm (libtoxcore)[arguments]: Remove autoconf phase.
2018-11-11 11:33:39 +01:00
Ricardo Wurmus 867d9de690
gnu: openocd: Use INVOKE.
* gnu/packages/embedded.scm (openocd)[arguments]: Use INVOKE and return #T
unconditionally.
2018-11-11 11:32:12 +01:00
Ricardo Wurmus 4cd6ab1b1f
gnu: libjaylink: Remove custom bootstrap phase.
* gnu/packages/embedded.scm (libjaylink)[arguments]: Remove.
2018-11-11 11:23:39 +01:00
Ricardo Wurmus a69cc70dea
gnu: lrdf: Replace bootstrap phase.
* gnu/packages/rdf.scm (lrdf)[arguments]: Remove autoreconf phase; replace
bootstrap phase instead.
2018-11-11 11:22:22 +01:00
Ricardo Wurmus d212ed2f00
gnu: lrdf: Fetch sources from git.
* gnu/packages/rdf.scm (lrdf)[source]: Fetch from git.
2018-11-11 11:21:55 +01:00
Ricardo Wurmus 2cabd29323
gnu: guildhall: Remove custom bootstrap phase.
* gnu/packages/guile.scm (guildhall)[arguments]: Remove autogen phase.
2018-11-11 10:38:00 +01:00
Ricardo Wurmus 34da5c394b
gnu: guile-dsv: Remove custom bootstrap phase.
* gnu/packages/guile.scm (guile-dsv)[arguments]: Remove autoreconf phase.
2018-11-11 10:22:45 +01:00
Ricardo Wurmus 5ad728e04c
gnu: opendht: Remove custom bootstrap phase.
* gnu/packages/crypto.scm (opendht)[arguments]: Remove autoconf phase.
2018-11-11 10:21:02 +01:00
Ricardo Wurmus 974056c05e
gnu: opendht: Fetch sources from git.
* gnu/packages/crypto.scm (opendht)[source]: Fetch from git.
2018-11-11 10:20:36 +01:00
Ricardo Wurmus a49b5322c5
gnu: lxsession: Remove custom bootstrap phase.
* gnu/packages/lxde.scm (lxsession)[arguments]: Remove autoreconf phase and
end rm-stamp phase with #T.
2018-11-11 10:16:43 +01:00
Ricardo Wurmus f1f1cebdd3
gnu: mdbtools: Fetch sources from git.
* gnu/packages/databases.scm (mdbtools)[source]: Fetch from git.
2018-11-11 10:09:54 +01:00