344e4741a1
gnu: r-survival: Update to 2.41-3.
...
* gnu/packages/statistics.scm (r-survival): Update to 2.41-3.
2017-04-06 14:39:13 +02:00
a6dcc78cb0
gnu: r-mgcv: Update to 1.8-17.
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* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17.
2017-04-06 14:39:13 +02:00
9704bda1b3
gnu: r-matrix: Update to 1.2-8.
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* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8.
2017-04-06 14:39:12 +02:00
9aea2cdaff
gnu: r-lattice: Update to 0.20-35.
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* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35.
2017-04-06 14:39:12 +02:00
7ceb26ee83
gnu: r-rprojroot: Update to 1.2.
...
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2.
2017-04-06 14:39:12 +02:00
e15f962fef
gnu: r-htmltable: Update to 1.9.
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* gnu/packages/web.scm (r-htmltable): Update to 1.9.
[propagated-inputs]: Add "r-checkmate" and "r-htmlwidgets".
2017-04-06 14:39:11 +02:00
d3812fb233
gnu: r-curl: Update to 2.4.
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* gnu/packages/web.scm (r-curl): Update to 2.4.
2017-04-06 14:39:11 +02:00
4cd07e487e
gnu: r-genomeinfodb: Update to 1.10.3.
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* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.3.
[propagated-inputs]: Add "r-rcurl".
2017-04-06 14:39:11 +02:00
acbeb2d56b
gnu: r-xvector: Update to 0.14.1.
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* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.1.
2017-04-06 14:39:11 +02:00
da250f733a
gnu: r-bioccheck: Update to 1.10.1.
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* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.10.1.
[propagated-inputs]: Remove "r-knitr" and "r-devtools".
2017-04-06 14:39:11 +02:00
d51f05f769
gnu: r-tidyr: Update to 0.6.1.
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* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1.
[propagated-inputs]: Add "r-tibble".
2017-04-06 14:39:10 +02:00
1db293757b
gnu: r-roxygen2: Update to 6.0.1.
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* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1.
[propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2".
2017-04-06 14:39:10 +02:00
bf6dcf59eb
gnu: Add r-commonmark.
...
* gnu/packages/statistics.scm (r-commonmark): New variable.
2017-04-06 14:39:10 +02:00
1cbb07a8e4
gnu: Add r-desc.
...
* gnu/packages/statistics.scm (r-desc): New variable.
2017-04-06 14:39:10 +02:00
67deeea41b
gnu: r-readr: Update to 1.1.0.
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* gnu/packages/statistics.scm (r-readr): Update to 1.1.0.
[propagated-inputs]: Remove "r-curl".
2017-04-06 14:39:09 +02:00
33eb555e6f
gnu: r-tibble: Update to 1.3.0.
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* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0.
[propagated-inputs]: Remove "r-assertthat".
2017-04-06 14:39:09 +02:00
aad7808526
gnu: r-jsonlite: Update to 1.3.
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* gnu/packages/web.scm (r-jsonlite): Update to 1.3.
2017-04-06 14:39:09 +02:00
538bce2472
gnu: ldc-bootstrap: Delete failing test.
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* gnu/packages/ldc.scm (ldc-bootstrap)[arguments]: Delete failing test in
build phase.
2017-04-06 14:34:12 +02:00
cb5be6df91
gnu: guile-aspell: Switch to Guile 2.2.
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* gnu/packages/guile.scm (guile-aspell)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
2017-04-06 10:45:55 +02:00
7295087eb1
gnu: guile-aspell: Remove hard-coded "site/2.0" from $(guilesitedir).
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* gnu/packages/guile.scm (guile-aspell)[arguments]: Remove
#:configure-flags. Add 'set-guilesitedir' phase.
2017-04-06 10:42:51 +02:00
234ea3d653
gnu: guile-aspell: Update to 0.4.
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* gnu/packages/guile.scm (guile-aspell): Update to 0.4.
[arguments] <#:phases>: Adjust 'set-libaspell-file-name' to new source
tree layout.
2017-04-06 10:37:52 +02:00
5ea69d9a56
system: Support the --root option in 'guix system'.
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Fixes <https://bugs.gnu.org/26271 >.
* guix/scripts/system.scm (perform-action): Add #:gc-root parameter and
honor it.
(show-help): Document the --root option.
(%options): Add 'root'.
(process-action): Pass 'root' option to perform-action as #:gc-root.
* doc/guix.texi (Invoking guix system): Document '--root'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-06 10:24:32 +02:00
a09b45da6f
build: Add and export procedure 'register-root*'.
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* guix/scripts/build.scm (register-root*): Add and export it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-06 10:11:26 +02:00
50f4ea18c4
environment: Deal with single-entry search paths.
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This is a followup to fcd75bdbfa
2017-04-05 22:50:21 +02:00
31f1f593fb
doc: Add "Documentation" section.
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* doc/guix.texi (Documentation): New node.
2017-04-05 22:45:42 +02:00
a0b87ef8ec
profiles: Generate database file for man pages.
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The mandb database file (index.db) is used by the "apropos" (whatis) or
"man -k" commands. This change introduces a profile hook to generate
such database file.
* guix/profiles.scm (manual-database): New procedure.
(%default-profile-hooks): Add it.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-04-05 22:45:41 +02:00
1618006d0b
build-system/python: 'package-with-explicit-python' uses 'package-mapping'.
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* guix/build-system/python.scm (package-with-explicit-python)
[package-variant, cut?]: New procedures.
[transform]: Remove 'mlambdaq' form and input tuple handling.
Use 'package-mapping'.
2017-04-05 22:45:41 +02:00
f37f2b83fa
packages: Add 'package-mapping' and base 'package-input-rewriting' on it.
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* guix/packages.scm (package-mapping): New procedure.
(package-input-rewriting): Rewrite in terms of 'package-mapping'.
* tests/packages.scm ("package-mapping"): New test.
* doc/guix.texi (Defining Packages): Document it.
2017-04-05 22:45:41 +02:00
79f912c710
Revert "gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'."
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This reverts commit 01fe019166
2017-04-05 22:45:41 +02:00
b28187cd0c
Revert "gnu: bc: Update to 1.07."
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This reverts commit dfee7daedb
2017-04-05 21:23:41 +02:00
cd381c317b
gnu: Move audacity to audio.scm.
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* gnu/packages/audacity.scm: Remove file and move audacity...
* gnu/packages/audio.scm: ...here.
* gnu/local.mk: Remove reference to removed file.
2017-04-05 15:08:14 -04:00
5ae63362ae
import cran: Distinguish Bioconductor data packages.
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* guix/import/cran.scm (bioconductor-package?): Exclude Bioconductor
data packages.
(bioconductor-data-package?): New procedure.
2017-04-05 18:38:51 +02:00
1108a920bd
gnu: sra-tools: Fix glibc naming conflict.
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* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Add build phase
"patch-away-glibc-conflict" to fix a definition conflict with glibc 2.25.
2017-04-05 18:06:51 +02:00
beebe43176
gnu: sra-tools: Use "modify-phases" syntax.
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* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use "modify-phases"
syntax.
2017-04-05 18:06:51 +02:00
fc5b12879f
gnu: diamond: Update to 0.8.37.
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* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.37.
2017-04-05 22:49:01 +10:00
b23c1a71be
download: Update the GnuPG mirror list.
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* guix/download.scm (%mirrors) <gnupg>: Use HTTP for TU Wien mirror.
2017-04-05 07:07:35 -04:00
52b2d666ca
gnu: kdevelop: Update to 5.1.0.
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* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.1.0.
2017-04-05 12:12:34 +02:00
dfee7daedb
gnu: bc: Update to 1.07.
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* gnu/packages/algebra.scm (bc): Update to 1.07.
[native-inputs]: Add ed and texinfo.
[arguments]: Use default ‘configure’ phase.
2017-04-05 03:31:58 +02:00
f0bacad682
gnu: bc: Actually use readline.
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* gnu/packages/algebra.scm (bc)[arguments]: Add ‘--with-readline’
to #:configure-flags.
2017-04-05 03:31:58 +02:00
5894b60491
gnu: algebra: Re-order imports.
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* gnu/packages/algebra.scm: Order imports alphabetically.
2017-04-05 03:31:58 +02:00
01fe019166
gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'.
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* gnu/packages/graphics.scm (openexr)[arguments]: Add
'set-ilmbase-directory-in-pc-file' phase.
2017-04-05 00:53:03 +02:00
f84011d04a
services: cuirass: Wait for networking.
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* gnu/services/cuirass.scm (cuirass-shepherd-service): Add 'networking'
to 'requirements'.
2017-04-05 00:53:03 +02:00
1c6b2d3f98
build: Export register-root procedure.
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* guix/scripts/build.scm: Export register-root procedure.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-05 00:53:03 +02:00
8db947169f
gnu: icecat: Use bundled ICU to avoid crashes.
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* gnu/packages/gnuzilla.scm (icecat)[arguments] <#:configure-flags>:
Temporarily comment out "--with-system-icu".
2017-04-04 20:18:38 +02:00
cca906754d
gnu: icecat: Re-enable parallel build.
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* gnu/packages/gnuzilla.scm (icecat)[arguments]: Re-enable parallel build.
2017-04-04 20:18:38 +02:00
33b2520175
gnu: python-django: Specify CPE name.
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* gnu/packages/django.scm (python-django, python2-django)[properties]: Add
"cpe-name".
2017-04-04 18:30:52 +02:00
dcc9b6abc7
gnu: python-django: Update to 1.10.7 [fixes CVE-2017-7233 and CVE-2017-7234].
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* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.7.
2017-04-04 18:01:32 +02:00
4dc12417d2
gnu: gnupg: Update to 2.1.20.
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* gnu/packages/gnupg.scm (gnupg): Update to 2.1.20.
[source]: Remove patch.
* gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-04-04 17:46:28 +02:00
a3dea99107
gnu: python2-cython: Fix build on 32-bit platforms.
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* gnu/packages/python.scm (python-cython, python2-cython)[source]: Add patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-04-04 17:46:28 +02:00
6beaa5a02a
gnu: moc: Add Ogg Vorbis support.
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* gnu/packages/music.scm (moc)[inputs]: Add libogg and libvorbis.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-04-04 15:16:25 +02:00
Ricardo Wurmus