Commit Graph

16206 Commits

Author SHA1 Message Date
Ricardo Wurmus 6faa2a48f0
gnu: r-geneplotter: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.52.0.
2016-10-26 09:28:08 +02:00
Ricardo Wurmus 9beba74f66
gnu: r-annotate: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.0.
2016-10-26 09:28:07 +02:00
Ricardo Wurmus 557a4b8e61
gnu: Add r-kernsmooth.
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2016-10-26 09:28:07 +02:00
Ricardo Wurmus f9875807e8
gnu: emacs-emms-player-mpv: Update to 0.0.10.
* gnu/packages/emacs.scm (emacs-emms-player-mpv): Update to 0.0.10.
2016-10-26 09:28:07 +02:00
Ricardo Wurmus a98470b5be
import cran: Use URL for Bioconductor 3.4.
* guix/import/cran.scm (%bioconductor-svn-url): Update to release URL
for version 3.4.
2016-10-26 09:28:06 +02:00
Leo Famulari 6c18c4f603
gnu: elfutils: Update to 0.167.
* gnu/packages/elf.scm (elfutils): Update to 0.167.
2016-10-25 22:11:59 -04:00
Leo Famulari 3de764f7a7
gnu: gtk+-2: Update to 2.24.31 [fixes CVE-2013-7447].
* gnu/packages/gtk.scm (gtk+-2): Update to 2.24.31.
2016-10-25 16:33:13 -04:00
Kei Kebreau 47a04fca99
gnu: mupdf: Fix CVE-2016-8674.
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf): Use it.
2016-10-25 12:50:50 -04:00
Thomas Danckaert 4b12fe5cab
gnu: coda: Remove bundled libraries.
* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-25 14:56:37 +02:00
Ludovic Courtès 301d73f68c
build: 'guilemoduledir' honors $GUILE_EFFECTIVE_VERSION.
* configure.ac: Define 'guilemoduledir' as a function of
$GUILE_EFFECTIVE_VERSION.
2016-10-25 14:00:33 +02:00
Ludovic Courtès 8ce84bf1f5
svg: Autoload Guile-RSVG and Guile-Cairo.
Fixes compilation by 'guix pull' where Guile-{RSVG,Cairo} are missing.
Reported by Efraim Flashner.

* gnu/build/svg.scm: Use 'module-autoload!' rather than 'module-use!'.
2016-10-25 13:57:28 +02:00
Mark H Weaver e9a19bde40
gnu: linux-libre@4.1: Update to 4.1.35.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.35.  Remove
patch.
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-24 22:53:18 -04:00
Mark H Weaver c4a667bfa5
gnu: Add missing module import to (gnu packages gl).
This is a followup to commit f1267c872f.

* gnu/packages/gl.scm: Import (gnu packages).
2016-10-24 22:45:38 -04:00
Mark H Weaver f1267c872f
gnu: mesa: Fix 'wayland-egl-symbols-check' on MIPS.
* gnu/packages/patches/mesa-wayland-egl-symbols-check-mips.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa)[source]: Add patch when building on MIPS.
2016-10-24 22:28:32 -04:00
Ludovic Courtès ffde82c9ec
system: grub: Use Guile-{RSVG,Cairo} instead of Inkscape + ImageMagick.
Based on a suggestion by Andy Wingo at
<https://lists.gnu.org/archive/html/guix-devel/2015-08/msg00753.html>.

* gnu/build/svg.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/system/grub.scm (svg->png): Add #:width and #:height.  Rewrite to
use (gnu build svg).
(resize-image): Remove.
(grub-background-image): Adjust accordingly.
2016-10-25 01:21:28 +02:00
Leo Famulari 19a65e7c8c
gnu: perl-eval-closure: Update to 0.14.
* gnu/packages/perl.scm (perl-eval-closure): Update to 0.14.
2016-10-24 17:29:25 -04:00
Thomas Danckaert d91025e3d0
gnu: Add coda.
* gnu/packages/maths.scm (coda): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:14:52 +02:00
Thomas Danckaert d3c4f3bb00
gnu: Add hdf-eos2.
* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:05:20 +02:00
Amirouche 3b5783fcd9
gnu: Add guile-bytestructures
* gnu/packages/guile.scm (guile-bytestructures): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 22:51:52 +02:00
Julien Lepiller 8c00b83818
services: nginx: Virtual hosts are first-class configuration items.
* gnu/services/web.scm (<nginx-vhost-configuration>): New record type.
(config-domain-strings): New procedure.
(config-index-strings): New procedure.
(default-nginx-vhost-config): New procedure.
(default-nginx-config): Add vhost support and temporary directories
(nginx-activation): Create temporary directories
(nginx-service): Add vhost-list key.
* doc/guix.texi (Web Services): Document 'nginx-vhost-configuration'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 22:50:40 +02:00
Leo Famulari 4691428059
gnu: twolame: Make the test suite compatible with Perl 5.24.
* gnu/packages/audio.scm (twolame)[source]: Add snippet to fix test.
2016-10-24 16:19:25 -04:00
Efraim Flashner 405be8dceb
gnu: efl: Update to 1.18.2.
* gnu/packages/enlightenment.scm (efl): Update to 1.18.2.
2016-10-24 22:01:00 +03:00
Kei Kebreau c201b28bfa
gnu: red-eclipse: Update to 1.5.6.
* gnu/packages/games.scm (red-eclipse): Update to 1.5.6.
[arguments]: Adjust phases.
2016-10-24 13:25:39 -04:00
ng0 9c798f9036
gnu: Add whois.
* gnu/packages/networking.scm (whois): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-24 17:40:53 +01:00
宋文武 bd1b1e0517
gnu: gnumeric: Use 'glib-or-gtk-build-system'.
Reported by Pjotr Prins <pjotr.public12@thebird.nl>.

* gnu/packages/gnome.scm (gnumeric)[build-systems]: Switch to
GLIB-OR-GTK-BUILD-SYSTEM.
2016-10-24 19:19:34 +08:00
Leo Famulari 02cfea6627
gnu: musl: Fix CVE-2016-8859.
* gnu/packages/patches/musl-CVE-2016-8859.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/musl.scm (musl)[source]: Use it.
2016-10-23 18:08:17 -04:00
Kei Kebreau 8e3017cc65
gnu: windowmaker: Update to 0.95.7.
* gnu/packages/gnustep.scm (windowmaker): Update to 0.95.7.
2016-10-23 17:52:28 -04:00
Arun Isaac 0f6b6cb996
gnu: gajim: Update to 0.16.6.
* gnu/packages/messaging.scm (gajim): Update to 0.16.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:40:50 -04:00
Arun Isaac d6465efaa9
gnu: gajim: License is "version 3 only".
* gnu/packages/messaging.scm (gajim)[license]: Change to GPL3.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:40:50 -04:00
Leo Famulari 41e94ad50a
nls: Update 'fr' translation. 2016-10-23 17:22:18 -04:00
ng0 2dfa90721d
gnu: weechat: Update to 1.6.
* gnu/packages/irc.scm (weechat): Update to 1.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:10:22 -04:00
Leo Famulari ef73acd30d
gnu: diffoscope: Disable failing test.
* gnu/packages/package-management.scm (diffoscope)[arguments]: Add
'disable-failing-test' phase.
2016-10-23 17:05:09 -04:00
Leo Famulari 1bafad5661
gnu: audit: Use GnuTLS instead of OpenSSL.
* gnu/packages/admin.scm (audit)[inputs]: Replace openssl with gnutls.
2016-10-23 16:38:21 -04:00
Mark H Weaver 93cb98d481
gnu: icu4c: On MIPS, pass --with-data-packaging=archive to configure.
* gnu/packages/icu4c.scm (icu4c)[arguments]: On MIPS, pass
"--with-data-packaging=archive" to configure.
2016-10-23 14:18:26 -04:00
Mark H Weaver ca0635b4ba
Merge branch 'master' into core-updates 2016-10-23 14:16:39 -04:00
Danny Milosavljevic 903276d066
gnu: Add python-flask-sqlalchemy.
* gnu/packages/python.scm (python-flask-sqlalchemy): New variable.
2016-10-23 19:41:11 +02:00
Danny Milosavljevic 31288222d4
gnu: Add python-flask-basicauth.
* gnu/packages/python.scm (python-flask-basicauth): New variable.
2016-10-23 19:41:10 +02:00
Danny Milosavljevic 999d964d64
gnu: Add python-flask-restful.
* gnu/packages/python.scm (python-flask-restful): New variable.
2016-10-23 19:31:39 +02:00
Danny Milosavljevic 0990edfecb
gnu: Add python-aniso8601.
* gnu/packages/python.scm (python-aniso8601): New variable.
2016-10-23 19:31:39 +02:00
Rene Saavedra 04ce840a82
gnu: Add bluefish.
* gnu/packages/gnome.scm (bluefish): New variable.
2016-10-23 19:26:30 +02:00
Hartmut Goebel b5c347ad3d
import: pypi: All inputs are propagated-inputs by default.
* guix/import/pypi.scm (maybe-inputs): Return inputs as
  "propagated-inputs".
2016-10-23 19:23:14 +02:00
Tobias Geerinckx-Rice 373e765ec3
gnu: openconnect: Update to 7.07.
* gnu/packages/vpn.scm (openconnect): Update to 7.07.
2016-10-23 16:33:04 +02:00
Tobias Geerinckx-Rice bdc74f07c3
gnu: weex: Use ‘modify-phases’.
* gnu/packages/ftp.scm (weex): Use the ‘modify-phases’ syntax.
2016-10-23 16:33:04 +02:00
Ricardo Wurmus 5f5b57681c
gnu: Add guitarix-lv2.
* gnu/packages/audio.scm (guitarix-lv2): New variable.
2016-10-23 15:47:35 +02:00
Ricardo Wurmus 84d53724ba
gnu: Add mod-utilities.
* gnu/packages/music.scm (mod-utilities): New variable.
2016-10-23 15:47:35 +02:00
Ricardo Wurmus 3d4b1bb9a1
gnu: Add jalv-select.
* gnu/packages/music.scm (jalv-select): New variable.
2016-10-23 15:47:35 +02:00
Ricardo Wurmus c2c9e74891
gnu: Add mod-host.
* gnu/packages/music.scm (mod-host): New variable.
2016-10-23 15:47:35 +02:00
Efraim Flashner 875dc49b00
gnu: jasper: Update to 1.900.13.
* gnu/packages/image.scm (jasper): Update to 1.900.13.
[arguments]: Build with -std=c99 support.
2016-10-23 16:32:04 +03:00
ng0 5cb7974109
gnu: Add libpsyc.
* gnu/packages/psyc.scm (libpsyc): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-23 16:32:03 +03:00
ng0 3a14b2bcf6
gnu: Add perl-net-psyc.
* gnu/packages/psyc.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-23 16:32:03 +03:00