ccfac015bf
gnu: wcslib: Update to 5.20.
...
* gnu/packages/astronomy.scm (wcslib): Update to 5.20.
[arguments]: Build parallelly.
2018-10-06 23:29:31 +02:00
e90ce11577
gnu: git: Update to 2.19.1 [fixes CVE-2018-17456].
...
* gnu/packages/version-control.scm (git): Update to 2.19.1.
2018-10-06 04:11:26 -04:00
d71078bc75
gnu: Add ngless.
...
* gnu/packages/bioinformatics.scm (ngless): New variable.
2018-10-05 23:59:27 +02:00
b1f9cc88c4
gnu: Add ghc-safeio.
...
* gnu/packages/haskell.scm (ghc-safeio): New variable.
2018-10-05 23:59:27 +02:00
ea202046fa
gnu: Add ghc-file-embed.
...
* gnu/packages/haskell.scm (ghc-file-embed): New variable.
2018-10-05 23:59:27 +02:00
c7e400b1ee
gnu: Add ghc-configurator.
...
* gnu/packages/haskell.scm (ghc-configurator): New variable.
2018-10-05 23:59:26 +02:00
d453b89944
gnu: Add ghc-bytestring-lexing.
...
* gnu/packages/haskell.scm (ghc-bytestring-lexing): New variable.
2018-10-05 23:59:26 +02:00
d9ee3e375c
gnu: Add ghc-inline-c-cpp.
...
* gnu/packages/haskell.scm (ghc-inline-c-cpp): New variable.
2018-10-05 23:59:26 +02:00
9ef95a196f
gnu: Add ghc-safe-exceptions.
...
* gnu/packages/haskell.scm (ghc-safe-exceptions): New variable.
2018-10-05 23:59:26 +02:00
88189099df
gnu: Add ghc-inline-c.
...
* gnu/packages/haskell.scm (ghc-inline-c): New variable.
2018-10-05 23:59:26 +02:00
52f5114d01
gnu: Add ghc-raw-string-qq.
...
* gnu/packages/haskell.scm (ghc-raw-string-qq): New variable.
2018-10-05 23:59:26 +02:00
5e6bf3e2da
gnu: Add ghc-hpack.
...
* gnu/packages/haskell.scm (ghc-hpack): New variable.
2018-10-05 23:59:26 +02:00
320323141f
gnu: Add ghc-interpolate.
...
* gnu/packages/haskell.scm (ghc-interpolate): New variable.
2018-10-05 23:59:26 +02:00
a933cbfb61
gnu: Add ghc-conduit-algorithms.
...
* gnu/packages/haskell.scm (ghc-conduit-algorithms): New variable.
2018-10-05 23:59:26 +02:00
71c2e3e1a1
gnu: Add ghc-pqueue.
...
* gnu/packages/haskell.scm (ghc-pqueue): New variable.
2018-10-05 23:59:26 +02:00
4fc161b9c6
gnu: Add ghc-bzlib-conduit.
...
* gnu/packages/haskell.scm (ghc-bzlib-conduit): New variable.
2018-10-05 23:59:26 +02:00
44c6180b3f
gnu: Add ghc-lzma-conduit.
...
* gnu/packages/haskell.scm (ghc-lzma-conduit): New variable.
2018-10-05 23:59:26 +02:00
38757d610e
gnu: Add ghc-bindings-dsl.
...
* gnu/packages/haskell.scm (ghc-bindings-dsl): New variable.
2018-10-05 23:59:26 +02:00
80588cfccf
gnu: Add ghc-stm-conduit.
...
* gnu/packages/haskell.scm (ghc-stm-conduit): New variable.
2018-10-05 23:59:26 +02:00
36ec599e78
gnu: Add ghc-lzma.
...
* gnu/packages/haskell.scm (ghc-lzma): New variable.
2018-10-05 23:59:26 +02:00
d05ed20ef1
gnu: Add ghc-cereal-conduit.
...
* gnu/packages/haskell.scm (ghc-cereal-conduit): New variable.
2018-10-05 23:59:26 +02:00
6c8197783d
gnu: Add ghc-atomic-write.
...
* gnu/packages/haskell.scm (ghc-atomic-write): New variable.
2018-10-05 23:59:25 +02:00
562cfae330
gnu: Add ghc-chart-cairo.
...
* gnu/packages/haskell.scm (ghc-chart-cairo): New variable.
2018-10-05 23:59:25 +02:00
7df25c77c5
gnu: Add ghc-cairo.
...
* gnu/packages/haskell.scm (ghc-cairo): New variable.
2018-10-05 23:59:25 +02:00
279c97dba8
gnu: ghc-regex: Fix build.
...
* gnu/packages/haskell.scm (ghc-regex)[arguments]: Add build phase to relax
version checks.
2018-10-05 23:59:25 +02:00
a45c64701b
gnu: ghc-http-conduit: Remove ghc-http-client from native-inputs.
...
* gnu/packages/haskell-web.scm (ghc-http-conduit)[native-inputs]: Remove
ghc-http-client.
2018-10-05 23:59:25 +02:00
11ff2adc74
gnu: ruby-sass: Update to 3.6.0.
...
* gnu/packages/ruby.scm (ruby-sass)[version]: Update to 3.6.0.
[source]: Update sha256.
[native-inputs]: Add ruby-mathn, as this is needed when using Ruby 2.5.
2018-10-05 21:25:42 +01:00
4d372cb9a2
gnu: Add ruby-mathn.
...
* gnu/packages/ruby.scm (ruby-mathn): New variable.
2018-10-05 21:25:42 +01:00
2c7cb711e9
gnu: ruby-sass-spec: Fix spec expectation.
...
This fixes building ruby-sass with Ruby 2.5.
* gnu/packages/ruby.scm (ruby-sass-spec)[arguments]: Add patch-test phase to
fix the expectation of one of the tests. Also change the comment regarding the
tests not being run.
2018-10-05 21:25:42 +01:00
39ecb977d3
gnu: ruby-term-ansicolor: Fix test for Ruby 2.5.
...
* gnu/packages/ruby.scm (ruby-term-ansicolor)[arguments]: Add new fix-test
phase to fix a test that fails under Ruby 2.5.
2018-10-05 21:25:41 +01:00
0b060e3486
gnu: ruby-shindo: Remove -rubygems flags.
...
These have been removed in Ruby 2.5.
* gnu/packages/ruby.scm (ruby-shindo)[arguments]: Change fix-tests phase to
also remove the -rubygems flags.
2018-10-05 21:25:41 +01:00
357450dca0
gnu: bioruby: Update to 1.5.2.
...
This works with Ruby 2.5.
* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.2.
2018-10-05 21:25:39 +01:00
b0e829c632
gnu: gnucash-docs: Update to 3.3.
...
The documentation on SourceForge is now located in the same directory as the
source code.
* gnu/packages/gnucash.scm (gnucash-docs): Update to 3.3.
2018-10-05 14:28:44 -04:00
73ca145a7e
gnu: gnucash: Update to 3.3.
...
* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnucash.scm (gnucash): Update to 3.3.
[source]: Add patch.
[arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and
'glib-or-gtk-wrap' phases.
2018-10-05 13:41:08 -04:00
fc4738149f
gnu: Add bastet.
...
* gnu/packages/games.scm (bastet): New public variable.
* gnu/packages/patches/bastet-change-source-of-unordered_set.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-05 19:32:45 +02:00
b008a12ae7
gnu: fdroidserver: Update to 1.0.10.
...
* gnu/packages/android.scm (fdroidserver): Update to 1.0.10.
2018-10-05 19:30:09 +02:00
8713c03e55
gnu: audacity: Don't use unstable tarball.
...
* gnu/packages/audio.scm (audacity)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-10-05 19:30:09 +02:00
3f90445692
gnu: filezilla: Update to 3.37.4.
...
* gnu/packages/ftp.scm (filezilla): Update to 3.37.4.
2018-10-05 19:30:09 +02:00
38aca674c3
gnu: libfilezilla: Update to 0.14.0.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0.
2018-10-05 19:30:08 +02:00
a6798218be
gnu: samtools-0.1: Adjust to match changes in samtools.
...
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Override make
flags.
2018-10-05 09:21:54 +02:00
8e72f0f319
gnu: deeptools: Update to 3.1.2.
...
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2.
[source]: Fetch from git.
[arguments]: Delete reset-gzip-timestamps phase.
[inputs]: Add python-plotly.
2018-10-05 09:21:54 +02:00
939882f734
gnu: python-pysam: Update to 0.15.1.
...
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.15.1.
[source]: Fetch from git.
[arguments]: Delete tests requiring internet access; use "invoke".
[inputs]: Add curl.
2018-10-05 09:21:54 +02:00
1a28b9ab55
gnu: python-plotly: Add python-pandas to inputs.
...
* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add
python-pandas.
2018-10-05 09:21:54 +02:00
f79b59e311
gnu: bcftools: Update to 1.9.
...
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9.
[arguments]: Remove obsolete make flags.
2018-10-05 09:21:54 +02:00
4ae4a15232
gnu: samtools: Update to 1.9.
...
* gnu/packages/bioinformatics.scm (samtools): Update to 1.9.
[origin]: Remove bundled htslib sources.
[arguments]: Remove obsolete make-flags.
2018-10-05 09:21:54 +02:00
bd5f5eece9
gnu: htslib: Update to 1.9.
...
* gnu/packages/bioinformatics.scm (htslib): Update to 1.9.
2018-10-05 09:21:50 +02:00
4a5e2a90d8
gnu: icecat: Add fixes from mozilla-esr60 [security fixes].
...
Includes fixes for CVE-2018-12386 and CVE-2018-12387.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr60 repository.
2018-10-04 21:35:01 -04:00
2e073dc23c
gnu: linux-libre: Update to 4.18.12.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.12.
(%linux-libre-hash): Update hash.
2018-10-04 20:36:32 -04:00
2195636cc1
gnu: linux-libre@4.14: Update to 4.14.74.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.74.
(%linux-libre-4.14-hash): Update hash.
2018-10-04 20:36:30 -04:00
45f4ddd7c0
gnu: linux-libre@4.9: Update to 4.9.131.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.131.
2018-10-04 20:36:28 -04:00
Tobias Geerinckx-Rice