Commit Graph

20832 Commits

Author SHA1 Message Date
Mathieu Othacehe 6541673354
gnu: linux: Fix kconfig selection.
* gnu/packages/linux.scm (make-linux-libre): When cross-compiling,
  "kconfig" field is in native-inputs variable. So config is always #f
  when cross-compiling linux.
2017-11-07 18:16:02 +01:00
Dave Love f4433d09a1
gnu: openmpi: Add dependency on PSM.
* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM.
2017-11-07 18:09:13 +01:00
Dave Love 7bc05ef0ac
gnu: libfabric: Add dependency on PSM.
* gnu/packages/linux.scm (libfabric)[inputs]: Add PSM.
2017-11-07 18:09:13 +01:00
Dave Love fd23d259cd
gnu: Add PSM.
* gnu/packages/linux.scm (psm): New variable.
* gnu/packages/patches/psm-arch.patch,
gnu/packages/patches/psm-ldflags.patch,
gnu/packages/patches/psm-repro.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-11-07 18:09:13 +01:00
Gábor Boskovits 63b7fbe1bb
gnu: diffoscope: Update to 88.
* gnu/packages/package-management.scm (diffoscope): Update to 88.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
ng0 db0164b21f
gnu: awesome: Update to 4.2.
* gnu/packages/wm.scm (awesome): Update to 4.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
Timothy Sample 3eda8dd614
services: gdm: Add environment variables.
While not an optimal solution (see comment), this makes GDM functional.

* gnu/services/xorg.scm (gdm-shepherd-service): Set PATH and XDG_DATA_DIRS
environment variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
Timothy Sample 51bc8357e8
gnu: gdm: Add configure flags for better defaults.
* gnu/packages/gnome.scm (gdm)[arguments]<#:configure-flags>: Add
--with-initial-vt=7 and --enable-gdm-xsession.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
Timothy Sample 950d8e5d8c
gnu: gdm: Fix config file path.
* gnu/packages/gnome.scm (gdm)[arguments]<#:phases>: Fix the
'pre-configure phase so that GDM finds its config file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 18:09:13 +01:00
Oleg Pykhalov ad54924285
gnu: expect: Change home-page to http://expect.sourceforge.net/.
* gnu/packages/tcl.scm (expect): Change home-page to
  http://expect.sourceforge.net/.
2017-11-07 18:50:46 +03:00
Ricardo Wurmus e160aa1f81
gnu: Add r-gage.
* gnu/packages/bioinformatics.scm (r-gage): New variable.
2017-11-07 12:39:51 +01:00
Ricardo Wurmus 3121814ef1
gnu: Add r-keggrest.
* gnu/packages/bioinformatics.scm (r-keggrest): New variable.
2017-11-07 12:39:51 +01:00
Ricardo Wurmus a9540107c6
gnu: antlr3-3.3: Prettify build phases.
* gnu/packages/java.scm (antlr3-3.3)[arguments]: Prettify build phases
"bin-install" and "generate-grammar".
2017-11-07 12:39:50 +01:00
Ricardo Wurmus 9ecc4c69eb
gnu: r-servr: Update to 0.8.
* gnu/packages/web.scm (r-servr): Update to 0.8.
2017-11-07 08:15:45 +01:00
Ricardo Wurmus 60ec9da3aa
gnu: r-tidyselect: Update to 0.2.3.
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.3.
2017-11-07 08:15:44 +01:00
Ricardo Wurmus baa00ee90d
gnu: r-msnbase: Update to 2.4.0.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.4.0.
[propagated-inputs]: Add r-lattice; remove r-reshape2.
2017-11-07 08:15:44 +01:00
Ricardo Wurmus 39d9098def
gnu: r-mutationalpatterns: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.0.
[propagated-inputs]: Add r-cowplot, r-ggdendro, and r-s4vectors.
2017-11-07 08:15:44 +01:00
Ricardo Wurmus 14b3c71911
gnu: r-annotationhub: Update to 2.10.0.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.0.
[propagated-inputs]: Add r-curl.
2017-11-07 08:15:44 +01:00
Ricardo Wurmus 15ca195979
gnu: r-mzr: Remove bundled copy of boost.
* gnu/packages/bioinformatics.scm (r-mzr)[source]: Remove boost source.
[arguments]: Add build phase "use-system-boost" to link with our boost
package and avoid building the bundled sources.
2017-11-07 08:15:44 +01:00
Ricardo Wurmus 34b9675449
gnu: r-mzr: Update to 2.12.0.
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.12.0.
2017-11-07 08:15:43 +01:00
Ricardo Wurmus b500dbcdef
gnu: r-mzid: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.16.0.
2017-11-07 08:15:43 +01:00
Ricardo Wurmus eeaa6967f9
gnu: r-chipseq: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.28.0.
[propagated-inputs]: Add r-lattice.
2017-11-07 08:15:43 +01:00
Ricardo Wurmus 158b6743dc
gnu: r-genomicfeatures: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.30.0.
[propagated-inputs]: Add r-rmysql.
2017-11-07 08:15:43 +01:00
Ricardo Wurmus 74248d22a0
gnu: Add r-rmysql.
* gnu/packages/databases.scm (r-rmysql): New variable.
2017-11-07 08:15:43 +01:00
Ricardo Wurmus 4dd469ef6d
gnu: r-rtracklayer: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.0.
[arguments]: Adjust patch to use system zlib.
2017-11-07 08:15:42 +01:00
Ricardo Wurmus a044c7f4c4
gnu: r-biocparallel: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.12.0.
[propagated-inputs]: Add r-bh.
2017-11-07 08:15:42 +01:00
Ricardo Wurmus 42e11d3301
gnu: r-biomart: Update to 2.34.0.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.0.
[propagated-inputs]: Add r-progress and r-stringr.
2017-11-07 08:15:42 +01:00
Ricardo Wurmus 010ab2ffd2
gnu: r-edger: Update to 3.20.1.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.1.
[propagated-inputs]: Add r-rcpp.
2017-11-07 08:15:42 +01:00
Ricardo Wurmus eb3f5cc76a
gnu: r-gostats: Update to 2.44.0.
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.44.0.
[propagated-inputs]: Add r-rgraphviz.
2017-11-07 08:15:41 +01:00
Ricardo Wurmus 2404cc4283
gnu: r-category: Update to 2.44.0.
* gnu/packages/bioinformatics.scm (r-category): Update to 2.44.0.
[propagated-inputs]: Remove r-rsqlite; add r-dbi.
2017-11-07 08:15:41 +01:00
Ricardo Wurmus 65a8cd6676
gnu: r-lubridate: Update to 1.7.1.
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.1.
[propagated-inputs]: Add r-rcpp.
2017-11-07 08:15:41 +01:00
Ricardo Wurmus 689edf1153
gnu: r-preprocesscore: Update to 1.40.0.
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.40.0.
2017-11-07 08:15:41 +01:00
Ricardo Wurmus e7f680f071
gnu: r-r-utils: Update to 2.6.0.
* gnu/packages/statistics.scm (r-r-utils): Update to 2.6.0.
2017-11-07 08:15:41 +01:00
Ricardo Wurmus ecfe98a17a
gnu: r-openssl: Update to 0.9.8.
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.8.
2017-11-07 08:15:40 +01:00
Ricardo Wurmus aced057fbc
gnu: r-rlang: Update to 0.1.4.
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.4.
2017-11-07 08:15:40 +01:00
Ricardo Wurmus 1be0f53664
gnu: r-vsn: Update to 3.46.0.
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.46.0.
[propagated-inputs]: Remove r-hexbin.
2017-11-07 08:15:40 +01:00
Ricardo Wurmus 007424b5a5
gnu: r-motifrg: Rename input label.
* gnu/packages/bioinformatics.scm (r-motifrg)[propagated-inputs]:
Rename label of r-bsgenome-hsapiens-ucsc-hg19.
2017-11-07 08:15:40 +01:00
Ricardo Wurmus ce59d62519
gnu: r-motifrg: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.22.0.
2017-11-07 08:15:40 +01:00
Ricardo Wurmus 98791c25c8
gnu: r-qvalue: Update to 2.10.0.
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.10.0.
2017-11-07 08:15:39 +01:00
Ricardo Wurmus 87fa5aface
gnu: r-fastseq: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-fastseq): Update to 1.24.0.
2017-11-07 08:15:39 +01:00
Ricardo Wurmus 1567c8d91b
gnu: r-interactivedisplaybase: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to
1.16.0.
2017-11-07 08:15:39 +01:00
Ricardo Wurmus 0096127974
gnu: r-edaseq: Update to 2.12.0.
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.12.0.
2017-11-07 08:15:39 +01:00
Ricardo Wurmus 22752bef3b
gnu: r-msnid: Update to 1.11.0.
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.11.0.
2017-11-07 08:15:38 +01:00
Ricardo Wurmus 8140f680ad
gnu: r-deseq: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.30.0.
2017-11-07 08:15:38 +01:00
Ricardo Wurmus 531e80903f
gnu: r-aroma-light: Update to 3.8.0.
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.8.0.
2017-11-07 08:15:38 +01:00
Ricardo Wurmus a998c9a464
gnu: r-pcamethods: Update to 1.70.0.
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.70.0.
2017-11-07 08:15:38 +01:00
Ricardo Wurmus 8a8138d248
gnu: r-affyio: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.48.0.
2017-11-07 08:15:38 +01:00
Ricardo Wurmus dad5f83817
gnu: r-affy: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.56.0.
2017-11-07 08:15:37 +01:00
Ricardo Wurmus 9a665dfb6f
gnu: r-protgenerics: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.10.0.
2017-11-07 08:15:37 +01:00
Ricardo Wurmus 617700895b
gnu: r-seqlogo: Update to 1.44.0.
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.44.0.
2017-11-07 08:15:37 +01:00
Ricardo Wurmus e127c918f8
gnu: r-genomation: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.10.0.
[propagated-inputs]: Remove r-rhtslib.
[inputs]: Remove zlib.
2017-11-07 08:15:37 +01:00
Ricardo Wurmus e6ce4bf00d
gnu: r-impute: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.52.0.
2017-11-07 08:15:37 +01:00
Ricardo Wurmus 0f948b116b
gnu: r-seqpattern: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.10.0.
2017-11-07 08:15:36 +01:00
Ricardo Wurmus e67850b40d
gnu: r-bsgenome: Update to 1.46.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.46.0.
2017-11-07 08:15:36 +01:00
Ricardo Wurmus d13a3fea7e
gnu: r-topgo: Update to 2.30.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.0.
2017-11-07 08:15:36 +01:00
Ricardo Wurmus aeb73879f6
gnu: r-graph: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.56.0.
2017-11-07 08:15:36 +01:00
Ricardo Wurmus 96fb465174
gnu: r-genomicalignments: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.0.
2017-11-07 08:15:35 +01:00
Ricardo Wurmus 6fcbed7329
gnu: r-summarizedexperiment: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.8.0.
2017-11-07 08:15:35 +01:00
Ricardo Wurmus cb0a9a7493
gnu: r-delayedarray: Update to 0.4.1.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.4.1.
2017-11-07 08:15:35 +01:00
Ricardo Wurmus f8068419a6
gnu: r-rsamtools: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.30.0.
2017-11-07 08:15:35 +01:00
Ricardo Wurmus b719435ebb
gnu: r-biostrings: Update to 2.46.0.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.46.0.
2017-11-07 08:15:35 +01:00
Ricardo Wurmus 0f8d98f294
gnu: r-annotationdbi: Update to 1.40.0.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.40.0.
2017-11-07 08:15:34 +01:00
Ricardo Wurmus ca52123611
gnu: r-biobase: Update to 2.38.0.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.38.0.
2017-11-07 08:15:34 +01:00
Ricardo Wurmus aa5c1f61f1
gnu: r-genomicranges: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.0.
2017-11-07 08:15:34 +01:00
Ricardo Wurmus 2b6ae8bfd5
gnu: r-xvector: Update to 0.18.0.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.18.0.
2017-11-07 08:15:34 +01:00
Ricardo Wurmus f642c0e4c7
gnu: r-limma: Update to 3.34.0.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.0.
2017-11-07 08:15:33 +01:00
Ricardo Wurmus 7f1bac3528
gnu: r-variantannotation: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.0.
2017-11-07 08:15:33 +01:00
Ricardo Wurmus 8aab0235e0
gnu: r-genomeinfodb: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.14.0.
2017-11-07 08:15:33 +01:00
Ricardo Wurmus 9e482c2069
gnu: r-iranges: Update to 2.12.0.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.12.0.
2017-11-07 08:15:33 +01:00
Ricardo Wurmus 41f0f94976
gnu: r-s4vectors: Update to 0.16.0.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.16.0.
2017-11-07 08:15:33 +01:00
Ricardo Wurmus 2167eafc1d
gnu: r-biocstyle: Update to 2.6.0.
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.0.
2017-11-07 08:15:32 +01:00
Ricardo Wurmus 3241461670
gnu: r-biocinstaller: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.28.0.
2017-11-07 08:15:32 +01:00
Ricardo Wurmus d61fc4e104
gnu: r-biocgenerics: Update to 0.24.0.
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.24.0.
2017-11-07 08:15:32 +01:00
Ricardo Wurmus 704fe4d115
gnu: r-grohmm: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.12.0.
2017-11-07 08:15:32 +01:00
Ricardo Wurmus 843826e262
gnu: r-shortread: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.0.
2017-11-07 08:15:31 +01:00
Ricardo Wurmus b53755258a
gnu: r-systempiper: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.12.0.
2017-11-07 08:15:31 +01:00
Ricardo Wurmus 9f52e53d5d
gnu: r-gseabase: Update to 1.40.0.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.0.
2017-11-07 08:15:31 +01:00
Ricardo Wurmus fad7c0c7bd
gnu: r-sva: Update to 3.26.0.
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.26.0.
2017-11-07 08:15:31 +01:00
Ricardo Wurmus 91e1867972
gnu: r-methylkit: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.4.0.
2017-11-07 08:15:31 +01:00
Ricardo Wurmus c126ba69db
gnu: r-copywriter: Update to 2.10.0.
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.10.0.
2017-11-07 08:15:30 +01:00
Ricardo Wurmus 598dacf657
gnu: r-annotationfilter: Update to 1.2.0.
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.2.0.
2017-11-07 08:15:30 +01:00
Ricardo Wurmus e6b332d43b
gnu: r-rhdf5: Update to 2.22.0.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.22.0.
2017-11-07 08:15:30 +01:00
Ricardo Wurmus 19e8929cbd
gnu: r-tximport: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.6.0.
2017-11-07 08:15:30 +01:00
Ricardo Wurmus da153b7f94
gnu: r-bamsignals: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.10.0.
2017-11-07 08:15:30 +01:00
Ricardo Wurmus 5c18470008
gnu: r-zlibbioc: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.24.0.
2017-11-07 08:15:29 +01:00
Ricardo Wurmus 1d0263b44e
gnu: r-rhtslib: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.10.0.
2017-11-07 08:15:29 +01:00
Ricardo Wurmus c25154e5cb
gnu: r-rbgl: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.54.0.
2017-11-07 08:15:29 +01:00
Ricardo Wurmus 727706ad38
gnu: r-annotationforge: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.20.0.
2017-11-07 08:15:29 +01:00
Ricardo Wurmus 3fd010ff30
gnu: r-dexseq: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.0.
2017-11-07 08:15:28 +01:00
Ricardo Wurmus 0166dc07ef
gnu: r-deseq2: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.0.
2017-11-07 08:15:28 +01:00
Ricardo Wurmus 554fac74aa
gnu: r-genefilter: Update to 1.60.0.
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.60.0.
2017-11-07 08:15:28 +01:00
Ricardo Wurmus cb4d3ff2c4
gnu: r-geneplotter: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.56.0.
2017-11-07 08:15:28 +01:00
Ricardo Wurmus 2d4e887dc0
gnu: r-annotate: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.0.
2017-11-07 08:15:28 +01:00
Ricardo Wurmus 94fd86e5e1
gnu: r-dnacopy: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.52.0.
2017-11-07 08:15:27 +01:00
Ricardo Wurmus c7782c3f1f
gnu: r-biocviews: Update to 1.46.0.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.46.0.
[propagated-inputs]: Remove r-knitr.
2017-11-07 08:15:27 +01:00
Ricardo Wurmus 7373b4167a
gnu: r-bioccheck: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.14.0.
[native-inputs]: Remove which.
[propagated-inputs]: Add r-stringdist.
2017-11-07 08:15:27 +01:00
Ricardo Wurmus a40a04fdbb
gnu: Add r-stringdist.
* gnu/packages/cran.scm (r-stringdist): New variable.
2017-11-07 08:15:27 +01:00
Ricardo Wurmus 8ca2b2b06e
gnu: r-rgraphviz: Update to 2.22.0.
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.22.0.
2017-11-07 08:15:27 +01:00
Ludovic Courtès a0e4b41b40
gnu: guile-git: Update snapshot.
* gnu/packages/guile.scm (guile-git): Update to commit 951a32c.
2017-11-07 00:12:11 +01:00
Brendan Tildesley fedde43b6d
gnu: moka-icon-theme: Fix license.
* gnu/packages/gnome.scm (moka-icon-theme): Add cc-by-sa4.0 to license field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
Brendan Tildesley 550281fb5f
gnu: moka-icon-theme: Add faba-icon-theme as propagated input.
* gnu/packages/gnome.scm (moka-icon-theme)[propagated-inputs]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
Brendan Tildesley 8b0e4177ee
gnu: moka-icon-theme: Simplify package definition.
* gnu/packages/gnome.scm (moka-icon-theme): Inherit faba-icon-theme to avoid
  duplicating similar package definition.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
Brendan Tildesley d935e6a12c
gnu: Add faba-icon-theme.
* gnu/packages/gnome.scm (faba-icon-theme): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:11 +01:00
Carlo Zancanaro 47bd32d98e
gnu: electrum: Update to 3.0.
gnu/packages/finance.scm (electrum): Update to 3.0.
[inputs]: Change to python3 inputs.
[arguments]: Remove python-2. Disable tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:10 +01:00
Carlo Zancanaro ea0421bbf6
gnu: Add python-jsonrpclib-pelix.
* gnu/packages/python.scm (python-jsonrpclib-pelix, python2-jsonrpclib-pelix):
New variables.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-11-07 00:12:10 +01:00
Ludovic Courtès 96dc8f3527
packages: 'fold-packages' takes #:select? parameter.
* gnu/packages.scm (fold-packages): Add #:select? parameter and honor it.
2017-11-07 00:12:10 +01:00
Ludovic Courtès 0ad5f80982
Fix ambiguous imports.
* gnu/packages/ocaml.scm: Hide 'zip' from (srfi srfi-1).
* guix/git.scm: Select 'mkdir-p' from (guix build utils).
2017-11-07 00:12:10 +01:00
Efraim Flashner 913027f383
gnu: nnn: Update to 1.5.
* gnu/packages/admin.scm (nnn): Update to 1.5.
2017-11-06 23:07:19 +02:00
Efraim Flashner 6a534909fa
gnu: libuninameslist: Update to 20170807.
* gnu/packages/fontutils.scm (libuninameslist): Update to 20170807.
2017-11-06 23:07:13 +02:00
Efraim Flashner 10b159a303
gnu: u-boot: Only install 'MLO' output if it exists.
* gnu/packages/bootloaders.scm (u-boot)[arguments]: Add 'MLO' to
uboot-files only if it has been built.
2017-11-06 22:54:28 +02:00
Mathieu Othacehe b1a3079347
system: vm: Use 2^32 - 1 as hash size.
* gnu/system/vm.scm (operating-system-uuid): Use 2^32 - 1 instead of
  2^32 as hash size.

On some 32 bit system (ARM for example), 2^32 exceeds hash max
size (ULONG_MAX = 2^32 - 1).
2017-11-06 20:02:25 +01:00
Mathieu Othacehe dd208b936c
bootloaders: uboot: Add .img and MLO files to binary outputs.
* gnu/packages/bootloaders.scm (make-u-boot-package): Add .img and MLO files
  as binary output.
2017-11-06 19:58:21 +01:00
Mathieu Othacehe f6948189a9
linux: Add omap2plus generic kernel.
* gnu/packages/linux.scm (linux-libre-arm-omap2plus): New exported variable.
2017-11-06 19:55:10 +01:00
Mathieu Othacehe 2ac42fe51f
gnu: uboot: Fix same-arch? check.
* gnu/packages/bootloaders.scm (make-u-boot-package): Compare %current-system
  to system associated to given triplet. Comparing a system and a triplet
  didn't make sense.
2017-11-06 19:53:13 +01:00
Efraim Flashner d298e7652a
gnu: perl-test-www-mechanize-psgi: Update source uri.
* gnu/packages/web.scm (perl-test-www-mechanize-psgi)[source]: Update to
new source uri.
2017-11-06 20:39:45 +02:00
Efraim Flashner 12c613b548
gnu: dtc: Build python bindings.
* gnu/packages/bootloaders.scm (dtc)[native-inputs]: Add swig.
[inputs]: Add python-2.
[arguments]: Remove 'NO_PYTHON' from make-flags, add 'SETUP_PREFIX' to
set python bindings prefix.
2017-11-06 20:39:45 +02:00
Efraim Flashner ab8757c5b1
gnu: dtc: Update to 1.4.5.
* gnu/packages/bootloaders.scm (dtc): Update to 1.4.5.
[arguments]: Add NO_PYTHON flag to make-flags.
2017-11-06 20:39:45 +02:00
Efraim Flashner 9371600ec8
gnu: libxres: Update to 1.2.0.
* gnu/packages/xorg.scm (libxres): Update to 1.2.0.
2017-11-06 20:02:45 +02:00
Tobias Geerinckx-Rice fd592a12e2
gnu: youtube-dl: Update to 2017.11.06.
* gnu/packages/video.scm (youtube-dl): Update to 2017.11.06.
2017-11-06 18:18:41 +01:00
Efraim Flashner 8f4e3b95df
gnu: aria2: Update to 1.33.0.
* gnu/packages/bittorrent.scm (aria2): Update to 1.33.0.
2017-11-06 06:18:31 +02:00
Efraim Flashner 08e1f38ddd
gnu: emacs-undo-tree: Parameterize source uri.
* gnu/packages/emacs.scm (emacs-undo-tree)[source]: Replace hard-coded
version with version parameter.
2017-11-06 06:18:26 +02:00
Leo Famulari 73cd4022d6
gnu: borg: Update to 1.1.2.
* gnu/packages/backup.scm (borg): Update to 1.1.2.
[arguments]: Disable another test in the 'check' phase.
2017-11-05 20:36:05 -05:00
Eric Bavier d8799bd0df
gnu: netsurf: Update to 3.7.
For compatibility, dependents must be updated at the same time.

* gnu/packages/web.scm (libcss): Update to 0.7.0
(nsgenbind): Update to 0.5.
(netsurf): Update to 3.7.
[arguments]: Fix binary name in .desktop.  Adjust "docs" directory name.
* gnu/packages/patches/netsurf-system-utf8proc.patch: Adjust to new source.
2017-11-05 07:46:08 -06:00
Eric Bavier 772588bd22
gnu: libnspsl: Update to 0.1.2.
* gnu/packages/web.scm (libnspsl): Update to 0.1.2.
2017-11-05 07:46:08 -06:00
Eric Bavier f379c52f27
gnu: libnsgif: Update to 0.2.0.
* gnu/packages/web.scm (libnsgif): Update to 0.2.0.
2017-11-05 07:46:08 -06:00
Eric Bavier b20d97f848
gnu: libsvgtiny: Update to 0.1.6.
* gnu/packages/web.scm (libsvgtiny): Update to 0.1.6.
2017-11-05 07:46:08 -06:00
Eric Bavier 036f47a37e
gnu: libdom: Update to 0.3.2.
* gnu/packages/web.scm (libdom): Update to 0.3.2.
2017-11-05 07:46:08 -06:00
Eric Bavier e33f6efd60
gnu: libwapcaplet: Update to 0.4.0.
* gnu/packages/web.scm (libwapcaplet): Update to 0.4.0.
2017-11-05 07:46:08 -06:00
Eric Bavier 84dec7a0c0
gnu: hubbub: Update to 0.3.4.
* gnu/packages/web.scm (hubbub): Update to 0.3.4.
2017-11-05 07:46:07 -06:00
Eric Bavier bf56082605
gnu: netsurf-buildsystem: Update to 1.6.
* gnu/packages/web.scm (netsurf-buildsystem): Update to 1.6.
2017-11-05 07:46:00 -06:00
ng0 511d8a02e8
gnu: emacs-evil: Update to 1.2.13.
* gnu/packages/emacs.scm (emacs-evil): Update to 1.2.13.
(source): Adjust URL to new upstream location on github.
(home-page): likewise.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:47 +01:00
ng0 db574f7183
gnu: emacs-slime: Use correct Texinfo commands in the description.
Previously the description had "@{something}" in it which is never
valid Texinfo. This commit changes it to use "@command{something}"
to render the full description.

* gnu/packages/emacs.scm (emacs-slime)[description]: Correct Texinfo usage.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:33 +01:00
ng0 77a7891b87
gnu: emacs-undo-tree: Update to 0.6.6.
* gnu/packages/emacs (emacs-undo-tree): Update to 0.6.6.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:23:20 +01:00
ng0 5fa1b4174a
gnu: emacs-which-key: Update to 3.0.2.
* gnu/packages/emacs.scm (emacs-which-key): Update to 3.0.2.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:22:31 +01:00
ng0 9505877205
gnu: emacs-neotree: Update to 0.5.2.
* gnu/packages/emacs.scm (emacs-neotree): Update to 0.5.2.
[source](uri): Adjust URL to tag change.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 19:22:14 +01:00
Marius Bakke aa70cf8c36
gnu: redis: Update to 4.0.2.
* gnu/packages/databases.scm (redis): Update to 4.0.2.
2017-11-05 19:03:32 +01:00
Rutger Helling 39f2433c39
gnu: sdl2: Update to 2.0.7 and enable Wayland backend.
* gnu/packages/sdl.scm (sdl2): Update to 2.0.7.
[inputs]: Add wayland, wayland-protocols, libxkbcommon.
[arguments]: Add '--disable-wayland-shared' to #:configure-flags.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 18:14:19 +01:00
Gábor Boskovits 7c5cc40097
gnu: add disorderfs.
* gnu/packages/file-systems.scm (disorderfs): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:50:48 +01:00
Gábor Boskovits e55c46b850
gnu: python-decorator: Update to 4.1.2.
* gnu/packages/python.scm (python-decorator): Update to 4.1.2.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:27:42 +01:00
Brendan Tildesley 743d3f6502
gnu: calibre: Install mimetypes.
* gnu/packages/ebook.scm (calibre)[arguments]: Install mimetypes xml file.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
Brendan Tildesley 9132212fb8
gnu: calibre: Add optipng as an input.
* gnu/packages/ebook.scm (calibre)[inputs]: Add optipng.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
Brendan Tildesley bf4a40db3c
gnu: calibre: Add python2-dukpy as an input.
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-dukpy. dukpy was
  unbundled from Calibre, so we need to to use the Guix version.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
Brendan Tildesley 2e15906c1c
gnu: Add python-dukpy, python2-dukpy.
gnu/packages/python.scm (python-dukpy, python2-dukpy): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
Brendan Tildesley 7ed93a6c9e
gnu: calibre: Update to 3.11.1.
* gnu/packages/ebook.scm (calibre): Update to 3.11.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:01 +01:00
Rutger Helling 540dd1c8cc
gnu: retroarch: Enable Wayland support.
* gnu/packages/games.scm (retroarch)[inputs]: Add wayland.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
Rutger Helling ca1ddce8a3
gnu: weston: Update to 3.0.0.
* gnu/packages/freedesktop.scm (weston): Update to 3.0.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
rennes 8d2bde86ec
gnu: lollypop: Update to 0.9.304.
* gnu/packages/gnome.scm (lollypop): Update to 0.9.304.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-05 17:24:00 +01:00
Tobias Geerinckx-Rice 08d61397cd
gnu: gnome-terminal: Update to 3.26.2.
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.26.2.
2017-11-05 16:44:51 +01:00
Tobias Geerinckx-Rice 68488f275d
gnu: vte: Update to 0.50.2.
* gnu/packages/gnome.scm (vte): Update to 0.50.2.
2017-11-05 16:44:50 +01:00
Marius Bakke 7561be8699
gnu: fio: Update to 3.2.
* gnu/packages/benchmark.scm (fio): Update to 3.2.
2017-11-05 16:16:51 +01:00