2e7825bc7b
gnu: guile-sly: Do not propagate Guile.
...
* gnu/packages/guile.scm (guile-sly)[propagated-inputs]: Move GUILE-2.2
to...
[inputs]: ... here.
2017-12-01 18:47:34 +01:00
27c4796ef9
gnu: tor: Update to 3.1.9 [security fixes].
...
This release contains fixes for TROVE-2017-{009,010,011,012,013}.
* gnu/packages/tor.scm (tor): Update to 3.1.9.
2017-12-01 16:45:19 +01:00
b9fb70ca65
gnu: glusterfs: Replace hardcoded FHS references.
...
* gnu/packages/patches/glusterfs-use-PATH-instead-of-hardcodes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/file-systems.scm (glusterfs)[source]: Use it.
2017-12-01 16:41:23 +01:00
b59a8fd49a
gnu: Add mtr.
...
* gnu/packages/networking.scm (mtr): New public variable.
2017-12-01 16:11:57 +01:00
3f691f7196
gnu: ghc-blaze-builder: Update to 0.4.0.2.
...
* gnu/packages/haskell.scm (ghc-blaze-builder): Update to 0.4.0.2.
2017-12-01 16:08:59 +01:00
17c3a50dfd
gnu: ghc-asn1-types: Update to 0.3.2.
...
* gnu/packages/haskell-crypto.scm (ghc-asn1-types): Update to 0.3.2.
2017-12-01 16:08:58 +01:00
c24bfc3d2c
gnu: ghc-asn1-encoding: Update to 0.9.5.
...
* gnu/packages/haskell-crypto.scm (ghc-asn1-encoding): Update to 0.9.5.
2017-12-01 16:08:58 +01:00
92cd94648c
gnu: ghc-array: Update to 0.5.2.0.
...
* gnu/packages/haskell.scm (ghc-array): Update to 0.5.2.0.
2017-12-01 16:08:58 +01:00
1a1cf03f24
gnu: ghc-aeson-qq: Update to 0.8.2.
...
* gnu/packages/haskell-web.scm (ghc-aeson-qq): Update to 0.8.2.
2017-12-01 16:08:58 +01:00
f4548394d4
gnu: java: Fix several synopses & descriptions.
...
* gnu/packages/java.scm (java-plexus-classworlds)[description]: Fix typo and
use @code.
(java-plexus-container-default-bootstrap)[synopsis]: Hyphenate for clarity,
as done in the description.
[description]: Fix typo and use @dfn.
(java-jmh)[description]: Fix typo.
(java-xerial-core)[synopsis, description]: Fix typos.
2017-12-01 16:08:57 +01:00
c7ffbfe9f9
gnu: guile: Add version 2.2.3.
...
* gnu/packages/guile.scm (guile-2.2.3): New variable.
2017-12-01 16:00:15 +01:00
8ad4f0aa31
gnu: gnome-default-applications: Add Evince for PDF and PS.
...
* gnu/packages/gnome.scm (gnome-default-applications)[propagated-inputs]:
Add EVINCE.
[arguments]: Associate Evince with application/pdf and
application/postscript.
2017-12-01 16:00:14 +01:00
4afc903a8c
services: xorg: Add 'font-misc-misc' to the default font set.
...
Fixes <https://bugs.gnu.org/24279 >.
Reported by John Darrington <john@darrington.wattle.id.au>.
* gnu/services/xorg.scm (%default-xorg-fonts): Add FONT-MISC-MISC.
2017-12-01 16:00:14 +01:00
e695d79dc6
gnu: ghc-edisoncore: Fix typo in synopsis.
...
* gnu/packages/haskell.scm (ghc-edisoncore)[synopsis]: Fix typo.
2017-12-01 15:03:13 +01:00
fb5569b0c8
gnu: man-pages: Update to 4.14.
...
* gnu/packages/man.scm (man-pages): Update to 4.14.
2017-12-01 15:03:12 +01:00
00e39b2ea4
system: vm: Do not add EFI partition on ARM system.
...
* gnu/system/vm.scm (qemu-img): Do not add EFI partition if we are targetting
ARM.
UEFI support on u-boot is still experimental, so do not add EFI partition on
ARM for now.
2017-12-01 13:55:49 +01:00
f1de0e37d5
gnu: openfoam: Clean up to reduce closure.
...
This saves ~1GB.
* gnu/packages/simulation.scm (openfoam)[outputs]: Add debug.
[arguments]: Clean up .o and src after build.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
6101cad4d1
gnu: Add geomyidae.
...
* gnu/packages/web.scm (geomyidae): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
491cbd3553
gnu: Add emacs-evil-matchit.
...
* gnu/packages/emacs.scm (emacs-evil-matchit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
c03ba83c17
gnu: git: Run tests sequentially.
...
Fixes <https://bugs.gnu.org/29512 >.
Reported by George myglc2 Clemmer <myglc2@gmail.com>.
* gnu/packages/version-control.scm (git)[arguments]: Add
#:parallel-tests?.
2017-12-01 11:28:48 +01:00
f8446df663
gnu: elogind: Remove "uaccess" tag usage in "seat-late" rules.
...
* gnu/packages/freedesktop.scm (elogind)[arguments]: Add
'remove-uaccess-tag' phase.
2017-12-01 11:28:48 +01:00
1776d5cd18
gnu: linux-libre: Update to 4.14.3.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.3.
(%linux-libre-hash): Update hash.
2017-12-01 01:37:08 -05:00
6850c9ced5
gnu: linux-libre@4.9: Update to 4.9.66.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.66.
2017-12-01 01:36:21 -05:00
8b8600022c
gnu: linux-libre@4.4: Update to 4.4.103.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.103.
2017-12-01 01:35:44 -05:00
34a28c13f5
gnu: qemu: Enable seccomp support.
...
* gnu/packages/virtualization.scm (qemu)[inputs]: Add libseccomp.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
e33904336f
gnu: fish-guix: Update to 0.1.2.1.
...
* gnu/packages/shells.scm (fish-guix): Update to 0.1.2.1.
(license): Switch to bsd-3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
f00515b483
vm: Filter out file systems that refer to UUIDs or labels.
...
* gnu/system/vm.scm (virtualized-operating-system)[user-file-systems]:
Filter out things that refer to file system UUIDs or labels.
2017-11-30 18:14:57 +01:00
1d0865c19a
gnu: monero-core: Fix missing dependency.
...
* gnu/packages/finance.scm (monero-core)[inputs]: Add readline.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
1d752e4345
gnu: Add xautolock.
...
* gnu/packages/xdisorg.scm (xautolock): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:56 +01:00
117d8cc40e
gnu: jellyfish: Update to 2.2.7.
...
* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7.
[native-inputs]: Add pkg-config.
[inputs]: Add htslib.
2017-11-30 17:38:36 +01:00
f1b90a2b58
gnu: r-bigmemory: Update to 4.5.31.
...
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31.
[propagated-inputs]: Remove r-r-utils.
2017-11-30 17:28:27 +01:00
b50a4b1391
gnu: r-cowplot: Update to 0.9.1.
...
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1.
[propagated-inputs]: Add r-scales.
2017-11-30 17:28:27 +01:00
a3ae2fa537
gnu: r-rcppprogress: Update to 0.4.
...
* gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4.
[propagated-inputs]: Add r-devtools.
2017-11-30 17:28:26 +01:00
0382d37734
gnu: r-rmarkdown: Update to 1.8.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8.
[propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
2017-11-30 17:28:26 +01:00
e35cac9581
gnu: r-batchjobs: Update to 1.7.
...
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.7.
[propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove
r-fail and r-stringr.
2017-11-30 17:28:25 +01:00
05fd8e6b46
gnu: r-pracma: Update to 2.1.1.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
2017-11-30 17:28:24 +01:00
9b8d02011f
gnu: r-annotationhub: Update to 2.10.1.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.1.
2017-11-30 17:28:24 +01:00
87e91a9fff
gnu: r-msnid: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
2017-11-30 17:28:23 +01:00
439492654b
gnu: r-maldiquant: Update to 1.17.
...
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
2017-11-30 17:28:23 +01:00
06e8e0fc6c
gnu: r-genomicalignments: Update to 1.14.1.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
2017-11-30 17:28:22 +01:00
1ce5d32b49
gnu: r-limma: Update to 3.34.2.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
2017-11-30 17:28:22 +01:00
8131cf4162
gnu: r-variantannotation: Update to 1.24.2.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
2017-11-30 17:28:21 +01:00
d2081a17ed
gnu: r-getopt: Update to 1.20.1.
...
* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
2017-11-30 17:28:20 +01:00
4220ab0c81
gnu: r-gseabase: Update to 1.40.1.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
2017-11-30 17:28:20 +01:00
d259932ca8
gnu: r-dexseq: Update to 1.24.1.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.1.
2017-11-30 17:28:19 +01:00
058644c0f2
gnu: r-deseq2: Update to 1.18.1.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.1.
2017-11-30 17:28:18 +01:00
654c29aceb
gnu: r-annotate: Update to 1.56.1.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.1.
2017-11-30 17:28:18 +01:00
814fd32670
gnu: r-circlize: Update to 0.4.2.
...
* gnu/packages/cran.scm (r-circlize): Update to 0.4.2.
2017-11-30 17:28:17 +01:00
d76f987c42
gnu: r-rcpp: Update to 0.12.14.
...
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.14.
2017-11-30 17:28:17 +01:00
26007cd5ee
gnu: r-timedate: Update to 3042.101.
...
* gnu/packages/cran.scm (r-timedate): Update to 3042.101.
2017-11-30 17:28:16 +01:00
Ludovic Courtès