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12988 Commits

Author SHA1 Message Date
Andreas Enge 8e45188525 gnu: Add python-cysignals. 
* gnu/packages/python.scm (python-cysignals, python2-cysignals): New
  variables.
 2016-04-07 00:45:08 +02:00
Roel Janssen 9e3ba31c53 gnu: Add r-zlibbioc. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-06 17:38:42 -04:00
Roel Janssen b669d9c4c8 gnu: Add r-variantannotation. 
* gnu/packages/bioinformatics.scm (r-variantannotation): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-06 17:38:42 -04:00
Ludovic Courtès a7681d29dc gnu: pcre: Fix CVE-2016-3191. 
* gnu/packages/pcre.scm (pcre)[replacement]: New field.
(pcre-fixed): New variable.
* gnu/packages/patches/pcre-CVE-2016-3191.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-06 23:27:10 +02:00
Ludovic Courtès a70a50048b doc: Update reproducible-builds.org URL. 
* doc/guix.texi (Invoking guix challenge): Update reproducible-builds
URL.
 2016-04-06 23:23:56 +02:00
Ludovic Courtès ddbc7f7d81 doc: Use more https URLs. 
* doc/guix.texi (Invoking guix challenge): Use https instead of http.
 2016-04-06 23:22:49 +02:00
Ludovic Courtès 7cffaeb604 challenge: Really exit with non-zero upon hash mismatch. 
Reported by John Darrington.

* guix/scripts/challenge.scm (guix-challenge): Add an explicit 'exit'
call when ISSUES is empty.
* scripts/guix.in: Add comment about 'exit'.
* doc/guix.texi (Invoking guix challenge): Mention the behavior and exit
code.
 2016-04-06 23:21:26 +02:00
Ludovic Courtès 7b9a66e519 doc: Update use of old "PACKAGE-VERSION" syntax. 
* doc/guix.texi (Invoking guix edit): Use the @ syntax for versions.
 2016-04-06 23:16:02 +02:00
Ludovic Courtès d786d2f891 gnu: pcre: Disallow references to the "doc" output. 
* gnu/packages/pcre.scm (pcre)[arguments]: Add #:disallowed-references.
 2016-04-06 23:09:55 +02:00
Ludovic Courtès d46dd72c32 gnu: pcre: Add missing #:use-module. 
This is a followup to 425b853.

* gnu/packages/pcre.scm: Add missing #:use-module.
 2016-04-06 23:08:21 +02:00
Ludovic Courtès 425b8537e8 gnu: pcre: Fix CVE-2016-3191. 
* gnu/packages/patches/pcre-CVE-2016-3191.patch: New file.
* gnu/packages/pcre.scm (pcre)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-06 22:55:23 +02:00
Ludovic Courtès e37595d961 gnu: glibc: Update to 2.23. 
* gnu/packages/base.scm (glibc): Update to 2.23.  Remove
"glibc-locale-incompatibility.patch" and "glibc-CVE-2015-7547.patch",
now unneeded.
[arguments]: Add "libc_cv_ssp_strong=no" to #:configure-flags.  Remove
now unneeded patching of 'configure'.
* gnu/packages/patches/glibc-CVE-2015-7547.patch: Remove.
* gnu/packages/patches/glibc-locale-incompatibility.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
 2016-04-06 22:24:13 +02:00
Ludovic Courtès 61516a1613 Revert "gnu: binutils: Update to 2.26." 
This reverts commit 5d9356f0fe.

Binutils 2.26 and ld in particular reportedly has serious bugs.
For us, ld from 'binutils-cross-boot0' fails when linking 'cc1plus' in
the first stage.
 2016-04-06 22:24:13 +02:00
Ludovic Courtès 81cea47d4a gnu: perl: Do not retain references to GCC & co. 
Fixes <http://bugs.gnu.org/23077>.
Reported by David Thompson <dthompson2@worcester.edu>.

* gnu/packages/perl.scm (perl)[arguments]: Add 'remove-extra-references'
phase.  Remove -Dlibpth and -Dplibpth from #:configure-flags.
* gnu/packages/commencement.scm (perl-boot0): Add #:disallowed-references.
 2016-04-06 22:24:13 +02:00
Ludovic Courtès 2a5739b4c0 ld-wrapper: Unset 'GUILE_LOAD_COMPILED_PATH'. 
* gnu/packages/ld-wrapper.in: Unset 'GUILE_LOAD_COMPILED_PATH'.
 2016-04-06 22:24:13 +02:00
Ludovic Courtès 5d6c4d3794 gnu: commencement: Disable Texinfo tests during bootstrap. 
* gnu/packages/commencement.scm (texinfo-boot0): Add #:tests? #f.
 2016-04-06 22:24:13 +02:00
Efraim Flashner 0ea4079f34 gnu: abiword: Update to 3.0.1. 
* gnu/packages/abiword.scm (abiword): Update to 3.0.1.
[source]: Remove 4 patches.
[arguments]: Disable tests.
[inputs]: Add libxslt, replace gtk+-2 with gtk+.
[native-inputs]: Add libtool.
* gnu/packages/patches/abiword-link-plugins-against-backend.patch,
gnu/packages/patches/abiword-no-include-glib-internal-headers.patch,
gnu/packages/patches/abiword-pass-no-undefined-to-linker.patch,
gnu/packages/patches/abiword-use-proper-png-api.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-06 23:15:59 +03:00
Leo Famulari 17946534a4 gnu: hexchat: Update to 2.12.0. 
* gnu/packages/messaging.scm (hexchat): Update to 2.12.0.
 2016-04-06 16:11:57 -04:00
Kei Yamashita bd688698b6 gnu: Add wmcpuload. 
* gnu/packages/gnustep.scm (wmcpuload): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-06 14:51:27 -04:00
Andreas Enge 4323a5f0fd gnu: Add python-pkgconfig. 
* gnu/packages/python.scm (python-pkgconfig, python2-pkgconfig): New
  variables.
 2016-04-06 20:10:41 +02:00
Ludovic Courtès 8f03b70b02 gnu: info-reader: Adjust to 'texinfo-6.1' removal. 
* gnu/packages/texinfo.scm (info-reader): Change 'texinfo-6.1' to
'texinfo'.
 2016-04-06 14:20:09 +02:00
Ludovic Courtès 933d2fe4cf Merge branch 'master' into core-updates 2016-04-06 12:00:29 +02:00
Roel Janssen 4971d5d072 gnu: Add progress. 
* gnu/packages/admin.scm (progress): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-04-06 09:16:50 +03:00
Kei Yamashita 7407f7fef6 gnu: Add wmnd. 
* gnu/packages/gnustep.scm (wmnd): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-04-06 09:05:37 +03:00
Andreas Enge aae03c484f gnu: Add singular. 
* gnu/packages/algebra.scm (singular): New variable.
 2016-04-06 01:28:03 +02:00
Tobias Geerinckx-Rice 998afc3608 gnu: Add iodine. 
* gnu/packages/networking.scm (iodine): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-05 23:24:34 +02:00
Andreas Enge 53696f10c1 gnu: Add cddlib. 
* gnu/packages/maths.scm (cddlib): New variable.
 2016-04-05 19:22:36 +02:00
Andreas Enge b146763a86 gnu: Add 4ti2. 
* gnu/packages/maths.scm (4ti2): New variable.
 2016-04-05 18:48:02 +02:00
Andreas Enge 14e6520e2b gnu: Add NTL. 
* gnu/packages/algebra.scm (ntl): New variable.
 2016-04-05 17:43:50 +02:00
Efraim Flashner 588ad54ed3 gnu: mercurial: Update to 3.7.3 [fixes CVE-2016-{3068,3069,3630}]. 
* gnu/packages/version-control.scm (mercurial): Update to 3.7.3.
 2016-04-05 17:31:34 +03:00
Efraim Flashner 877889f3ca gnu: python-futures: Remove variable. 
* gnu/packages/python.scm (python-futures): Remove it.
 2016-04-05 15:02:30 +03:00
Efraim Flashner f71d1a08a1 gnu: git-annex-remote-hubic: Change to python2. 
* gnu/packages/version-control.scm (git-annex-remote-hubic)
[arguments]: Build with python2.
 2016-04-05 15:02:30 +03:00
Kei Yamashita f9ab1da0fa gnu: Add wmbattery. 
* gnu/packages/gnustep.scm (wmbattery): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-05 11:32:09 +03:00
Roel Janssen 9b36e25607 gnu: vcftools: Update to 0.1.14. 
* gnu/packages/bioinformatics.scm (vcftools): Update to 0.1.14.
[arguments]: Do not modify phases as it is not needed anymore.
[native-inputs]: Add 'pkg-config'.
[home-page]: Update to new location.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-05 11:29:32 +03:00
Efraim Flashner 17130e3919 gnu: mutt: Update to 1.6.0. 
* gnu/packages/mail.scm (mutt): Update to 1.6.0.
 2016-04-05 11:28:39 +03:00
Efraim Flashner 7a93feb874 gnu: vim: Use 'modify-phases'. 
* gnu/packages/vim.scm (vim)[arguments]: Use 'modify-phases' syntax.
 2016-04-05 10:03:07 +03:00
Leo Famulari c613a21ba6 gnu: mpd: Update to 0.19.14. 
* gnu/packages/mpd.scm (mpd): Update to 0.19.14.
 2016-04-05 00:34:52 -04:00
Mark H Weaver 37b2dba1cc gnu: libextractor: Improve ffmpeg-3 patch. 
* gnu/packages/patches/libextractor-ffmpeg-3.patch: Add additional
fixes and harmonize with patches in upstream repository.
 2016-04-04 23:49:48 -04:00
Mark H Weaver fd7fd3c167 gnu: libextractor: Add patch to fix build with ffmpeg-3. 
* gnu/packages/patches/libextractor-ffmpeg-3.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnunet.scm (libextractor)[source]: Add patch.
 2016-04-04 22:55:52 -04:00
Ludovic Courtès ae05e366be system: Define 'GTK_DATA_PREFIX' globally. 
Fixes <http://bugs.gnu.org/23200>.
Reported by Chris Marusich <cmmarusich@gmail.com>.

* gnu/system.scm (operating-system-environment-variables): Add
'GTK_DATA_PREFIX'.
 2016-04-04 23:45:57 +02:00
Ludovic Courtès e314ce1bd7 CoC: Clarify which project we're talking about. 
* CODE-OF-CONDUCT: Define "project" and "project maintainer" as
suggested by rms.
 2016-04-04 23:45:57 +02:00
Raymond Nicholson e71b20e5b5 gnu: mplayer: Update to 1.3.0. 
* gnu/packages/video.scm (mplayer): Update to 1.3.0.
 2016-04-04 16:33:23 -04:00
Raymond Nicholson 2a972b2fdf gnu: gst-libav: Update to 1.8.0. 
* gnu/packages/ffmpeg.scm (gst-libav): Update to 1.8.0.
 2016-04-04 16:27:04 -04:00
Efraim Flashner 49c90efb66 gnu: global: Update to 6.5.4. 
* gnu/packages/code.scm (global): Update to 6.5.4.
 2016-04-04 23:05:30 +03:00
Mark H Weaver 4c95bbba78 gnu: network-manager: Update to 1.0.12. 
* gnu/packages/gnome.scm (network-manager): Update to 1.0.12.
 2016-04-04 15:14:56 -04:00
Efraim Flashner 5c4d98ab50 gnu: scheme48: Update to 1.9.2. 
* gnu/packages/scheme.scm (scheme48): Update to 1.9.2.
 2016-04-04 22:01:40 +03:00
Alex Kost 183f42f90f emacs: Speed up starting the REPL. 
Delay initializing variables.

* emacs/guix-main.scm: (%packages): Rename to...
(%package-vhash): ... this.  Delay setting the value.
(package-vhash): New procedure (wrapper for '%package-vhash').
(%package-table): Delay setting the value.
(package-table): New procedure (wrapper for '%package-table').
(package-by-address, packages-by-name+version): Use wrappers.
 2016-04-04 20:11:22 +03:00
Alex Kost 619ff9066d emacs: Use (guix scripts lint) only when needed. 
* emacs/guix-main.scm: Do not use (guix scripts pull) module.
(lint-checker-names): Adjust to use it.
 2016-04-04 20:11:22 +03:00
Alex Kost 7d0978f56f emacs: Remove unused module. 
This is a followup to commit c67e344f21.

* emacs/guix-main.scm: Do not use (guix scripts pull).
 2016-04-04 20:11:22 +03:00
Alex Kost f1f09937a6 emacs: Stylistic improvements in guile code. 
* emacs/guix-main.scm (package-unique?): Use 'match' instead of 'cdr'.
(package-by-address): Likewise.
 2016-04-04 20:11:22 +03:00