* guix/import/cran.scm (vcs-file?): New procedure.
(download): Support downloading from git.
(fetch-description): Add a clause for the 'git repository type.
(files-match-pattern?): New procedure.
(tarball-files-match-pattern?): Implement in terms of FILES-MATCH-PATTERN?.
(directory-needs-fortran?, directory-needs-zlib?,
directory-needs-pkg-config?): New procedures.
(needs-fortran?, needs-zlib?, needs-pkg-config?): Rename these procedures...
(tarball-needs-fortran?, tarball-needs-zlib?, tarball-needs-pkg-config?):
...to this, and use them.
(file-hash): New procedure.
(description->package): Handle the 'git repository type.
* guix/import/utils.scm (package->definition): Handle package expression
inside of a let.
* guix/scripts/import.scm (guix-import): Handle let expressions.
* doc/guix.texi (Invoking guix import): Document it.
As discussed at
<https://sympa.inria.fr/sympa/arc/swh-devel/2019-08/msg00016.html>.
* guix/swh.scm (string*): New procedure.
(<visit>)[snapshot-url]: Pass 'string*' as the conversion procedure.
[status]: Pass 'string->symbol' as the conversion procedure.
(visit-snapshot): Return #f when 'visit-snapshot-url' returns #f.
(lookup-origin-revision): Filter to visits for which
'visit-snapshot-url' is true.
Fixes <https://bugs.gnu.org/37160>.
Reported by Jonathan Brielmaier <jonathan.brielmaier@web.de>.
* guix/lint.scm (check-for-updates): Make sure the first argument to
'with-networking-fail-safe' is the whole error message.
Fixes <https://bugs.gnu.org/37161>.
* guix/scripts/pack.scm (docker-image)[build]: Add a 'directory' entry
for "/tmp" to DIRECTIVES.
* tests/pack.scm ("docker-image + localstatedir"): Test the presence of /tmp.
* gnu/tests/docker.scm (run-docker-test)["Load docker image and run
it"]: Test the presence and permission bits of "/tmp".
* guix/docker.scm (symlink-source, topmost-component): Remove.
(directive-file): New procedure.
(build-docker-image): Remove #:symlinks and add #:extra-files.
Make a sub-directory "extra" and call 'evaluate-populate-directive' for
EXTRA-FILES in that directory.
* guix/scripts/pack.scm (docker-image)[build](symlink->directives,
directives): New procedures.
Pass #:extra-files instead of #:symlinks to 'build-docker-image'.
* guix/import/github.scm (updated-github-url): Use
'package-upstream-name' instead of 'package-name'. This allows
'github-package?' to match more packages, given an appropriate upstream
name.
Fixes a bug where propagated inputs that should be cross-compiled are instead
compiled for the host system.
* guix/packages.scm (bag-transitive-host-inputs): Call transitive-inputs in
the context of the bag's target system triplet.
Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
in <https://bugs.gnu.org/36931>.
* guix/swh.scm (swh-download): Check whether 'vault-fetch' return false
before calling 'dump-port'.
Fixes <https://bugs.gnu.org/36925>.
Reported by Jesse Gibbons <jgibbons2357@gmail.com>.
* guix/scripts/pack.scm (wrapped-package): Add 'output*' parameter.
[build]: Define 'input' and 'target'; use them instead of #$package and
#$output, respectively.
(wrapped-manifest-entry): New procedure.
(map-manifest-entries): Call PROC directly.
(guix-pack): Pass WRAPPED-MANIFEST-ENTRY to 'map-manifest-entries'.
In guile-json version 3, JSON objects are represented as hash tables, rather
than alists.
* guix/import/cpan.scm (string->license): Change the match expression to match
on lists, rather than vectors.
(module->dist-name, cpan-source-url, cpan-version): Change assoc-ref to
hash-ref.
(cpan-module->sexp): Change assoc-ref to hash-ref, and assoc-ref* to
hash-ref*.
* tests/cpan.scm ("source-url-http", "source-url-https"): Convert the alist to
a hash table.
With the change to guile-json version 3, JSON objects are represented as hash
tables, rather than alists. The cpan importer uses assoc-ref* on a hash table,
so add an equivalent function for hash tables.
* guix/import/utils.scm (hash-ref*): New procedure.
Previously, if the currently used archive type (e.g., "bz2") was
unavailable for the new version, 'guix refresh -u' would crash instead
of updating to the archive with the new type.
* guix/upstream.scm (package-update/url-fetch): When URL is #f, pick the
first of URLS; likewise for SIGNATURE-URL.
This is a followup to 81c3dc3224.
* guix/import/gnome.scm (jsonish->upstream-source): Use 'assoc-ref'
instead of 'hash-ref'.
(latest-gnome-release): Match a vector containing an alist, not a hash
table. Use 'fold' instead of 'hash-fold' over RELEASES.
Fixes <https://bugs.gnu.org/36777>.
Reported by Carl Dong <contact@carldong.me>.
* guix/derivations.scm (derivation/masked-inputs): Call
'delete-duplicates' on INPUTS.
* tests/derivations.scm ("derivation with duplicate fixed-output inputs"):
New test.
* guix/channels.scm (profile-channels): New procedure.
* guix/scripts/describe.scm (display-profile-info)[channels]: Define in
terms of 'profile-channels'.
* guix/import/cran.scm (%bioconductor-packages-list-url): Replace variable...
(bioconductor-packages-list-url): ...with this procedure.
(bioconductor-packages-list): Accept optional TYPE argument.
(latest-bioconductor-package-version): Same.
(fetch-description): Determine package type and use it in calls to
LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI.
(description->package): Pass package type to URI helper procedure; include
package type in annotation or experiment packages from Bioconducter.
* guix/build/make-bootstrap.scm (copy-linux-headers): New procedure; extract
from make-stripped-libc and add headers for Mes bootstrap.
(make-stripped-libc): Use it.
* guix/ssh.scm (remote-authorize-signing-key): New variable.
* gnu/machine/ssh.scm (deploy-managed-host): Authorize coordinator's
signing key before any invocations of 'remote-eval'.
(deploy-managed-host): Display an error if a signing key does not exist.
* doc/guix.texi (Invoking guix deploy): Remove section describing manual
signing key authorization.
(Invoking guix deploy): Add section describing the 'authorize?' field.
* gnu/machine.scm (roll-back-machine, &deploy-error, deploy-error?)
(deploy-error-should-roll-back)
(deploy-error-captured-args): New variable.
* gnu/machine/ssh.scm (roll-back-managed-host): New variable.
* guix/scripts/deploy.scm (guix-deploy): Roll-back systems when a
deployment fails.
* doc/guix.texi (Invoking guix deploy): Add section describing
prerequisites for deploying as a non-root user.
* guix/remote.scm (remote-pipe-for-gexp): New optional 'become-command'
argument.
(%remote-eval): New optional 'become-command' argument.
(remote-eval): New 'become-command' keyword argument.
* guix/ssh.scm (remote-inferior): New optional 'become-command'
argument.
(inferior-remote-eval): New optional 'become-command' argument.
(remote-authorize-signing-key): New optional 'become-command' argument.
* gnu/machine/ssh.scm (machine-become-command): New variable.
(managed-host-remote-eval): Invoke 'remote-eval' with the
'#:become-command' keyword.
(deploy-managed-host): Invoke 'remote-authorize-signing-key' with the
'#:become-command' keyword.
* gnu/services.scm (activation-script): Return a <program-file> rather
than a <scheme-file>.
* gnu/deploy.scm (guix-deploy): Remove handling for '--system'.
(show-help): Remove documentation for '--system'.
(%default-options): Remove default setting for 'system'.
* gnu/machine/ssh.scm (machine-ssh-configuration): Add 'system' field.
(managed-host-remote-eval): Pass 'system' field to 'remote-eval'.
(machine-check-building-for-appropriate-system): New variable.
(check-deployment-sanity): Add call to
'machine-check-building-for-appropriate-system'.
* doc/guix.texi (Invoking guix deploy): Describe new 'system' field.
* guix/ssh.scm (remote-system): New variable.
* guix/remote.scm (remote-eval): Use result of 'remote-system' when
lowering the G-Expression.
(remote-eval): Add 'system' keyword argument.
(trampoline): Return a <program-file> rather than a <scheme-file>.
It turns out the list in the release notes is incomplete.
This updates the list from /gnu/store/<hash>-ghc-8.4.3/lib/ghc-8.4.3.
* guix/import/hackage.scm (ghc-standard-libraries): Update list.
* guix/scripts/deploy.scm (load-source-file): Enumerate and include all
submodules of (gnu machine) when loading the provided deployment
specification.
Fixes <https://bugs.gnu.org/36942>.
Reported by ison <ison@airmail.cc>.
guix/scripts/system/reconfigure.scm (install-bootloader-program): Switch
new symlink to the canonical bootloader configuration file.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* guix/build/cargo-build-system.scm (generate-all-checksums): New
procedure.
(update-cargo-lock, patch-cargo-checksums): New phases.
(%standard-phases): Add 'update=cargo-lock after 'configure and
'patch-cargo-checksums after 'patch-generated-file-shebangs.
* doc/guix.texi (Build System)[cargo-build-system]: Mention how
Cargo.lock files are handled.
Mark H Weaver