ea0a06cee2
Remove 'guix-register' and its traces.
...
* Makefile.am (SH_TESTS): Remove tests/guix-register.sh.
* build-aux/pre-inst-env.in (GUIX_REGISTER): Remove.
* gnu/build/install.scm (directives): Remove outdated comment.
* gnu/build/vm.scm (root-partition-initializer): Update comment.
* gnu/packages/package-management.scm (guix-register): Remove.
* guix/config.scm.in (%sbindir, %guix-register-program): Remove.
* guix/scripts/system.scm (install): Adjust docstring.
* guix/self.scm (make-config.scm): Remove #:guix. Do not generate
%sbindir and %guix-register-program.
(specification->package): Remove "guix".
* nix/guix-register/guix-register.cc: Remove.
* nix/libstore/store-api.cc (decodeValidPathInfo): Remove.
* nix/libstore/store-api.hh (decodeValidPathInfo): Remove declaration.
* nix/local.mk (sbin_PROGRAMS, guix_register_SOURCES)
(guix_register_CPPFLAGS, guix_register_LDFLAGS): Remove.
* tests/guix-register.sh: Remove.
2018-06-14 11:17:00 +02:00
c5a2e1ffcb
build: Require Guile-SQLite3.
...
The next commits make (sqlite3) an indirect dependency of (gnu build
install), which is itself used by (guix scripts system), hence this new
requirement.
* configure.ac: Error out when $guix_cv_have_recent_guile_sqlite3 is
false. Remove HAVE_GUILE_SQLITE3 Automake conditional.
* Makefile.am (MODULES, SCM_TESTS): Remove HAVE_GUILE_SQLITE3 conditions.
* doc/guix.texi (Requirements): Add Guile-SQLite3.
* README: Ditto.
* gnu/packages/package-management.scm (guix)[propagated-inputs]: Add
GUILE-SQLITE3.
[arguments]: In 'wrap-program' phase, take guile-sqlite3 into account.
2018-06-14 11:16:58 +02:00
03439df66f
gnu: libgcrypt: Fix CVE-2018-0495.
...
* gnu/packages/gnupg.scm (libgcrypt)[replacement]: New field.
(libgcrypt/fixed): New package.
2018-06-14 11:06:48 +03:00
85d79a79e4
gnu: Add python-dns-lexicon.
...
* gnu/packages/python.scm (python-dns-lexicon, python2-dns-lexicon): New
variables.
2018-06-14 08:18:06 +02:00
b863b50d80
gnu: Add python-pynamecheap.
...
* gnu/packages/python.scm (python-pynamecheap, python2-pynamecheap): New
variables.
2018-06-14 08:18:02 +02:00
f4adbe7405
gnu: Add python-tldextract.
...
* gnu/packages/python.scm (python-tldextract, python2-tldextract): New
variables.
2018-06-14 08:17:59 +02:00
0dc572380b
gnu: Add python-requests-file.
...
* gnu/packages/python.scm (python-requests-file, python2-requests-file): New
variables.
2018-06-14 08:17:55 +02:00
40c1b61aac
gnu: Add tmate.
...
* gnu/packages/terminals.scm (tmate): New variable.
2018-06-14 11:20:31 +05:30
0b5c16c07f
Fix typo in (gnu packages gtk) header.
...
* gnu/packages/gtk.scm: Fix ‘Coypright’ typo.
2018-06-14 04:30:50 +02:00
b262aba733
gnu: python-gnupg: Return #t from phase.
...
* gnu/packages/gnupg.scm (python-gnupg)[arguments]: Substitute INVOKE
for SYSTEM*.
2018-06-14 04:02:14 +02:00
ff76a1e9ca
gnu: python-gnupg: Update to 0.4.3.
...
* gnu/packages/gnupg.scm (python-gnupg): Update to 0.4.3.
[arguments]: Remove obsolete substitution.
2018-06-14 04:01:21 +02:00
2b78360138
gnu: sssd: Update to 1.16.2.
...
* gnu/packages/sssd.scm (sssd): Update to 1.16.2.
[native-inputs]: Add libxml2.
2018-06-14 00:52:30 +02:00
844cc1c8f3
gnu: pigx-scrnaseq: Update to 0.0.5.
...
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.5.
[inputs]: Add python-magic.
2018-06-13 22:30:55 +02:00
4bf474b243
gnu: emacs-orgalist: Update to 1.8.
...
* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.8.
2018-06-13 21:38:18 +02:00
935cb931b5
gnu: emacspeak: Update to 48.0.
...
* gnu/packages/emacs.scm (emacspeak): Update to 48.0.
[arguments]: Use 'invoke'. In the 'install' phase, add additional
installation directories and fix the launch script substitution.
[inputs]: Add emacs and perl.
[native-inputs]: Remove emacs-minimal.
2018-06-13 14:44:13 -04:00
6ccd88e8cb
gnu: r-factoextra: Fix syntax error.
...
* gnu/packages/cran.scm (r-factoextra)[description]: Fix syntax error.
2018-06-13 16:42:29 +02:00
13b8dcf589
gnu: r-seurat: Update to 2.3.2.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.2.
[propagated-inputs]: Add r-hdf5r.
2018-06-13 15:14:37 +02:00
5b2a339e19
gnu: r-s4vectors: Update to 0.18.3.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.3.
2018-06-13 15:14:37 +02:00
5b730eba3e
gnu: r-biocviews: Update to 1.48.1.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.1.
2018-06-13 15:14:37 +02:00
c812f46817
gnu: r-rjson: Update to 0.2.20.
...
* gnu/packages/web.scm (r-rjson): Update to 0.2.20.
2018-06-13 15:14:37 +02:00
242ffd6c80
gnu: r-zoo: Update to 1.8-2.
...
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-2.
2018-06-13 15:14:37 +02:00
6221de1879
gnu: r-rmarkdown: Update to 1.10.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.10.
[propagated-inputs]: Add r-tinytex.
2018-06-13 15:14:37 +02:00
d086829d39
gnu: r-highr: Update to 0.7.
...
* gnu/packages/statistics.scm (r-highr): Update to 0.7.
2018-06-13 15:14:37 +02:00
26a53dd957
gnu: r-stringi: Update to 1.2.3.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.2.3.
2018-06-13 15:14:37 +02:00
3399dc97fc
gnu: r-munsell: Update to 0.5.0.
...
* gnu/packages/statistics.scm (r-munsell): Update to 0.5.0.
2018-06-13 15:14:37 +02:00
0357db53c8
gnu: r-rgooglemaps: Update to 1.4.2.
...
* gnu/packages/geo.scm (r-rgooglemaps): Update to 1.4.2.
2018-06-13 15:14:37 +02:00
1df9a0cf47
gnu: r-reticulate: Update to 1.8.
...
* gnu/packages/cran.scm (r-reticulate): Update to 1.8.
2018-06-13 15:14:37 +02:00
fa7236f1b3
gnu: r-later: Update to 0.7.3.
...
* gnu/packages/cran.scm (r-later): Update to 0.7.3.
2018-06-13 15:14:37 +02:00
36dc359186
gnu: r-radiant-data: Update to 0.9.5.
...
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.5.
[propagated-inputs]: Remove r-plyr; add r-glue, r-plotly, r-readxl, r-rlang,
and r-writexl.
2018-06-13 15:14:37 +02:00
014818b691
gnu: r-cubature: Update to 1.3-13.
...
* gnu/packages/cran.scm (r-cubature): Update to 1.3-13.
2018-06-13 15:14:37 +02:00
8d2f8aeddf
gnu: r-extradistr: Update to 1.8.9.
...
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.9.
2018-06-13 15:14:37 +02:00
1268a995da
gnu: r-statnet-common: Update to 4.1.2.
...
* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.2.
[propagated-inputs]: Add r-coda.
2018-06-13 15:14:37 +02:00
2bce7795c1
gnu: r-stringdist: Update to 0.9.5.1.
...
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.1.
2018-06-13 15:14:37 +02:00
d0396c8ea1
gnu: r-rcpproll: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-rcpproll): Update to 0.3.0.
2018-06-13 15:14:37 +02:00
a151f1e60a
gnu: r-extremes: Update to 2.0-9.
...
* gnu/packages/cran.scm (r-extremes): Update to 2.0-9.
2018-06-13 15:14:37 +02:00
d87130cb2e
gnu: r-sp: Update to 1.3-1.
...
* gnu/packages/cran.scm (r-sp): Update to 1.3-1.
2018-06-13 15:14:37 +02:00
5fa9be1118
gnu: r-getoptlong: Update to 0.1.7.
...
* gnu/packages/cran.scm (r-getoptlong): Update to 0.1.7.
2018-06-13 15:14:37 +02:00
7b60ab3df7
gnu: r-circlize: Update to 0.4.4.
...
* gnu/packages/cran.scm (r-circlize): Update to 0.4.4.
2018-06-13 15:14:37 +02:00
693b4d0ba5
gnu: r-globaloptions: Update to 0.1.0.
...
* gnu/packages/cran.scm (r-globaloptions): Update to 0.1.0.
2018-06-13 15:14:37 +02:00
846325a8d8
gnu: Add r-writexl.
...
* gnu/packages/cran.scm (r-writexl): New variable.
2018-06-13 15:14:37 +02:00
546fc4aa55
gnu: Add r-hdf5r.
...
* gnu/packages/cran.scm (r-hdf5r): New variable.
2018-06-13 15:14:37 +02:00
0c9868aa5b
gnu: Add r-nbclust.
...
* gnu/packages/cran.scm (r-nbclust): New variable.
2018-06-13 11:51:28 +02:00
f22bfee945
gnu: Add r-factoextra.
...
* gnu/packages/cran.scm (r-factoextra): New variable.
2018-06-13 11:51:28 +02:00
e83841a296
gnu: Add r-factominer.
...
* gnu/packages/cran.scm (r-factominer): New variable.
2018-06-13 11:51:28 +02:00
cbf6017d83
gnu: Add r-flashclust.
...
* gnu/packages/cran.scm (r-flashclust): New variable.
2018-06-13 11:51:28 +02:00
141e43bd4e
gnu: Add r-ellipse.
...
* gnu/packages/cran.scm (r-ellipse): New variable.
2018-06-13 11:51:28 +02:00
5cbaaee83f
gnu: Add r-ggpubr.
...
* gnu/packages/cran.scm (r-ggpubr): New variable.
2018-06-13 11:51:28 +02:00
5219c5c585
gnu: Add r-ggsignif.
...
* gnu/packages/cran.scm (r-ggsignif): New variable.
2018-06-13 11:51:28 +02:00
85df1a8631
gnu: Add r-ggsci.
...
* gnu/packages/cran.scm (r-ggsci): New variable.
2018-06-13 11:51:28 +02:00
0c6ade0be6
gnu: openrct2: Update to 0.2.0.
...
* gnu/packages/games.scm (openrct2-title-sequences): New variable.
* gnu/packages/games.scm (openrct2-objects): New variable.
* gnu/packages/games.scm (openrct2): Update to 0.2.0.
[arguments]: Add phases 'fix-usr-share-path&add-data, 'fix-gcc7 and
'get-rid-of-errors.
[inputs]: Add icu4c, openrct2-objects, openrct2-title-sequences.
[native-inputs]: Add gcc@7.
2018-06-13 11:33:03 +02:00
14618a1ebb
gnu: vkquake: Update to 1.00.0.
...
* gnu/packages/games.scm (vkquake): Update to 1.00.0.
2018-06-13 08:47:14 +02:00
4b3480d62f
gnu: cheese: Update to 3.28.0.
...
* gnu/packages/gnome.scm (cheese): Update to 3.28.0.
2018-06-13 08:44:02 +02:00
3a30ae05ae
gnu: openimageio: Update to 1.7.19.
...
* gnu/packages/graphics.scm (openimageio): Update to 1.7.19.
2018-06-13 00:31:58 -04:00
502a822dfd
gnu: tor: Update to 0.3.3.7.
...
* gnu/packages/tor.scm (tor): Update to 0.3.3.7.
2018-06-12 22:59:29 +02:00
b5792b9cb8
gnu: Add qtwebglplugin.
...
* gnu/packages/qt.scm (qtwebglplugin): New variable.
Co-authored-by: 宋文武 <iyzsong@member.fsf.org>
2018-06-12 22:47:01 +02:00
359e30c9ea
gnu: Add qtwebview.
...
* gnu/packages/qt.scm (qtwebview): New variable.
2018-06-12 22:47:01 +02:00
bea07c7f55
gnu: python-llfuse: Update to 1.3.3.
...
* gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.3.3.
2018-06-12 15:30:30 -04:00
67cb662a31
gnu: mes: Update to 0.15.
...
* gnu/packages/mes.scm (mes): Update to 0.15.
2018-06-12 19:21:10 +02:00
6921e95ae8
gnu: mame: Fix renaming executable.
...
* gnu/packages/emulators.scm (mame)[arguments]: Only rename 'mame64' to
'mame' when 'mame64' exists.
2018-06-12 19:08:47 +03:00
a9e7d6564b
gnu: multipath-tools: Fix build.
...
(multipath-tools)[arguments]: Pass -n to gzip to avoid timestamp related
warnings causing build failures.
2018-06-12 16:13:16 +02:00
90977eb55e
gnu: guile-bytestructures: Update to 1.0.3.
...
* gnu/packages/guile.scm (guile-bytestructures): Update to 1.0.3.
(guile-git)[arguments]: Remove. The workaround for
<https://github.com/TaylanUB/scheme-bytestructures/issues/30 > is no
longer needed.
2018-06-12 15:23:34 +02:00
b5edc47912
gnu: flann: Fix builds with CMake >= 3.11.
...
* gnu/packages/patches/flann-cmake-3.11.patch: New file.
* gnu/packages/maths.scm (flann)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-06-12 15:23:34 +02:00
feed5194b1
gnu: python-urwid, python2-urwid: Update to 2.0.1.
...
* gnu/packages/python.scm (python-urwid, python2-urwird): Update to 2.0.1.
2018-06-12 20:51:32 +08:00
66266d3290
gnu: borg: Update to 1.1.6.
...
* gnu/packages/backup.scm (borg): Update to 1.1.6.
[arguments]: Remove the 'adjust-msgpack-dependency' phase because it has been
adopted upstream.
2018-06-12 08:28:21 -04:00
e68e4a906f
gnu: fabric: Disable problematic tests.
...
Reported by Ricardo Wurmus <rekado@elephly.net> at
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=26647#8 >.
* gnu/packages/admin.scm (fabric): Add custom check phase to disable two tests.
2018-06-12 19:47:12 +08:00
7714a06943
gnu: Add skopeo.
...
* gnu/packages/virtualization.scm (skopeo): New variable.
2018-06-12 19:31:18 +08:00
efdaf8def0
gnu: Add umoci.
...
* gnu/packages/virtualization.scm (umoci): New variable.
2018-06-12 19:30:52 +08:00
3d39130926
gnu: Add libostree.
...
* gnu/packages/package-management.scm (libostree): New variable.
2018-06-12 19:28:18 +08:00
c71cc133ec
gnu: vim-syntastic: Update to 3.9.0.
...
* gnu/packages/vim.scm (vim-syntastic): Update to 3.9.0.
[source]: Switch to git checkout.
2018-06-12 11:16:06 +03:00
261348e20d
gnu: vim-fugitive: Update to 2.3.
...
* gnu/packages/vim.scm (vim-fugitive): Update to 2.3.
2018-06-12 11:16:06 +03:00
35a7e5742f
gnu: vim-airline: Update to 0.9.
...
* gnu/packages/vim.scm (vim-airline): Update to 0.9.
[source]: Switch to git checkout.
2018-06-12 11:16:05 +03:00
b37404740e
gnu: speedtest-cli: Update to 2.0.2.
...
* gnu/packages/networking.scm (speedtest-cli): Update to 2.0.2.
[source]: Switch to a git checkout.
2018-06-12 11:16:05 +03:00
5b47ea9462
gnu: font-gnu-unifont: Update to 11.0.01.
...
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 11.0.01.
2018-06-12 11:16:02 +03:00
14cb7966ba
gnu: wine-staging: Update to 3.10.
...
* gnu/packages/wine.scm (wine-staging): Update to 3.10.
2018-06-12 10:15:03 +02:00
32872458a6
gnu: wine-staging-patchset-data: Update to 3.10.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.10.
2018-06-12 10:15:03 +02:00
95d9d95a04
gnu: linux-libre: Update to 4.17.1.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.1.
(%linux-libre-hash): Update hash.
2018-06-12 02:57:20 -04:00
f3ad05efd9
gnu: linux-libre@4.14: Update to 4.14.49.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.49.
(%linux-libre-4.14-hash): Update hash.
2018-06-12 02:56:19 -04:00
2c5f8aad92
gnu: Add emacs-puppet-mode.
...
* gnu/packages/emacs.scm (emacs-puppet-mode): New variable.
2018-06-12 07:49:42 +01:00
e7a25d2ae7
gnu: elixir: Enable more tests and remove patch.
...
Previously, due to issues in the erlang package, many tests would fail, and
the package would also nondeterministically fail to build. This is now
fixed (by patching occurrences of /bin/sh in the erlang package), so all the
tests can be run.
* gnu/packages/elixir.scm (elixir)[source]: Remove patches.
[arguments]: Remove the fix-or-disable-tests phase. Add a new set-home phase
to set the HOME environment variable prior to running the tests.
* gnu/packages/patches/elixir-disable-failing-tests.patch: Delete this file.
* gnu/local.mk: Remove now deleted patch.
2018-06-12 07:46:18 +01:00
b5453aa7c3
gnu: erlang: Patch occurrences of /bin/sh in the source.
...
Previously, the elixir package would often fail to build, as running :os:cmd
would fail, as /bin/sh doesn't exist when building the elixir package. These
changes fix that issue.
* gnu/packages/erlang.scm (erlang)[arguments]: Add new patch-/bin/sh phase to
replace hardcoded references to /bin/sh with a file in the store.
2018-06-12 07:44:05 +01:00
9b25e1d124
gnu: erlang: Delete the bootstrap phase.
...
This fails for the erlang package, as the gnu build system attempts to execute
the bootstrap directory.
* gnu/packages/erlang.scm (erlang)[arguments]: Delete the bootstrap phase.
2018-06-12 07:43:59 +01:00
6321ce42ab
gnu: xf86-video-vmware: Update to 13.3.0.
...
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.3.0.
2018-06-11 23:23:10 +02:00
4276b0dc1e
gnu: xf86-input-evdev: Update to 2.10.6.
...
* gnu/packages/xorg.scm (xf86-input-evdev): Update to 2.10.6.
2018-06-11 23:15:36 +02:00
7b7e30ca29
gnu: xf86-input-synaptics: Update to 1.9.1.
...
* gnu/packages/xorg.scm (xf86-input-synaptics): Update to 1.9.1.
2018-06-11 23:13:26 +02:00
8cfcb6ba2a
gnu: xf86-video-fbdev: Update to 0.5.0.
...
* gnu/packages/xorg.scm (xf86-video-fbdev): Update to 0.5.0.
2018-06-11 23:10:04 +02:00
b63f6c0192
gnu: python2: Deprecate "python@2".
...
* gnu/packages/python.scm (python2-called-python): New variable.
2018-06-11 18:23:24 +02:00
4d65c1c304
gnu: wine-staging: Add vkd3d support.
...
* gnu/packages/wine.scm (wine-staging)[inputs]: Add vkd3d.
2018-06-11 18:22:10 +02:00
85c7f29a25
gnu: Add vkd3d.
...
* gnu/packages/vulkan.scm (vkd3d): New variable.
2018-06-11 18:22:10 +02:00
7f54065487
gnu: shaderc: Update to be8e087.
...
* gnu/packages/vulkan.scm (shaderc): Update to be8e087.
[arguments]: Enable tests.
[inputs]: Add googletest.
2018-06-11 18:22:10 +02:00
fcfef82592
gnu: glslang: Update to 32d3ec3.
...
* gnu/packages/vulkan.scm (glslang): Update to 32d3ec3.
2018-06-11 18:22:10 +02:00
ba10e0b8e1
gnu: spirv-tools: Update to fe2fbee.
...
* gnu/packages/vulkan.scm (spirv-tools): Update to fe2fbee.
[arguments]: Disable tests. Remove "-DCMAKE_INSTALL_LIBDIR" configure-flag.
2018-06-11 18:22:10 +02:00
c7c86de669
gnu: spirv-headers: Update to 3ce3e49.
...
* gnu/packages/vulkan.scm (spirv-headers): Update to 3ce3e49. Use INVOKE.
2018-06-11 18:22:10 +02:00
6da97043ea
gnu: Add ovmf-arm.
...
* gnu/packages/firmware.scm (ovmf-arm): New variable.
2018-06-11 19:16:23 +03:00
cb97be5f83
gnu: Add ovmf-aarch64.
...
* gnu/packages/firmware.scm (ovmf-aarch64): New variable.
2018-06-11 19:16:23 +03:00
ff3fd83969
gnu: libraw: Update to 0.18.12 [security fixes].
...
* gnu/packages/photo.scm (libraw): Update to 0.18.12.
2018-06-11 18:08:21 +02:00
9526d86141
gnu: libndp: Update to 1.7.
...
* gnu/packages/networking.scm (libndp): Update to 1.7.
2018-06-11 18:05:54 +02:00
f24cfb6cc3
gnu: webkitgtk: Update to 2.20.3 [security fixes].
...
Fixes CVE-2018-4190, CVE-2018-4199, CVE-2018-4218, CVE-2018-4222,
CVE-2018-4232, CVE-2018-4233, CVE-2018-4246 and CVE-2018-11646.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.20.3.
2018-06-11 17:56:56 +02:00
6e5a6e641a
gnu: efivar: Update to 36.
...
* gnu/packages/linux.scm (efivar): Update to 36.
2018-06-11 17:54:31 +02:00
21a21c20da
gnu: ldb: Delete bundled libraries from the source.
...
* gnu/packages/samba.scm (ldb)[source](snippet): New field.
2018-06-11 17:54:30 +02:00
4ee30d6aa2
gnu: ldb: Update to 1.4.0.
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* gnu/packages/samba.scm (ldb): Update to 1.4.0.
[inputs]: Add LMDB.
2018-06-11 17:54:30 +02:00
Ludovic Courtès