Commit Graph

10914 Commits

Author SHA1 Message Date
ng0 1df790d50d
gnu: Add psyclpc.
* gnu/packages/psyc.scm (psyclpc): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 11:29:35 +03:00
Ludovic Courtès 19262a718e
gnu: opensmtpd: Fix 'license' field.
* gnu/packages/mail.scm (opensmtpd)[license]: Use LICENSE:OPENSSL, not
OPENSSL.
(opensmtpd-extras)[license]: Likewise.
2016-10-26 10:19:18 +02:00
Ricardo Wurmus 59198f8fff
gnu: r-genomationdata: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.6.0.
2016-10-26 09:28:23 +02:00
Ricardo Wurmus e357bec836
gnu: r-bamsignals: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.6.0.
2016-10-26 09:28:23 +02:00
Ricardo Wurmus 53ca52f013
gnu: r-rhtslib: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.6.0.
[native-inputs]: Add autoconf.
2016-10-26 09:28:23 +02:00
Ricardo Wurmus da22da862b
gnu: r-zlibbioc: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.20.0.
2016-10-26 09:28:22 +02:00
Ricardo Wurmus 809251e164
gnu: r-motifrg: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.18.0.
2016-10-26 09:28:22 +02:00
Ricardo Wurmus 21d6c7a3e1
gnu: r-seqlogo: Update to 1.40.0.
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.40.0.
2016-10-26 09:28:22 +02:00
Ricardo Wurmus 51c3c4900f
gnu: r-genomation: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.6.0.
[propagated-inputs]: Add r-rcpp, r-htslib, r-runit, r-s4vectors.
[inputs]: Add zlib.
2016-10-26 09:28:21 +02:00
Ricardo Wurmus e92dd6f5e0
gnu: r-seqpattern: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.6.0.
[propagated-inputs]: Add r-kernsmooth.
2016-10-26 09:28:21 +02:00
Ricardo Wurmus acf6f7e0c3
gnu: r-impute: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.48.0.
2016-10-26 09:28:21 +02:00
Ricardo Wurmus 3d74c04451
gnu: r-bsgenome: Update to 1.42.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.42.0.
2016-10-26 09:28:20 +02:00
Ricardo Wurmus 30ec4de738
gnu: r-topgo: Update to 2.26.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.26.0.
[propagated-inputs]: Add r-dbi.
2016-10-26 09:28:20 +02:00
Ricardo Wurmus 3587b464fc
gnu: r-graph: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.52.0.
2016-10-26 09:28:19 +02:00
Ricardo Wurmus d1b1587cad
gnu: r-go-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.4.0.
2016-10-26 09:28:19 +02:00
Ricardo Wurmus b17aac083e
gnu: r-genomicfeatures: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.0.
2016-10-26 09:28:18 +02:00
Ricardo Wurmus 6a45fd9aea
gnu: r-rtracklayer: Update to 1.34.0.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.0.
2016-10-26 09:28:18 +02:00
Ricardo Wurmus 4ab32f0cd6
gnu: r-genomicalignments: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
1.10.0.
2016-10-26 09:28:18 +02:00
Ricardo Wurmus 08da08d296
gnu: r-summarizedexperiment: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
1.4.0.
2016-10-26 09:28:17 +02:00
Ricardo Wurmus c0ccef41ae
gnu: r-rsamtools: Update to 1.26.1.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.26.1.
2016-10-26 09:28:17 +02:00
Ricardo Wurmus 47d39b6e7a
gnu: r-biostrings: Update to 2.42.0.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.0.
2016-10-26 09:28:17 +02:00
Ricardo Wurmus 89559a124e
gnu: r-biocparallel: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.0.
2016-10-26 09:28:16 +02:00
Ricardo Wurmus 9405333186
gnu: r-biomart: Update to 2.30.0.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.30.0.
2016-10-26 09:28:16 +02:00
Ricardo Wurmus e45dc05781
gnu: r-annotationdbi: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.0.
2016-10-26 09:28:16 +02:00
Ricardo Wurmus 464870caf7
gnu: r-biobase: Update to 2.34.0.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.34.0.
2016-10-26 09:28:15 +02:00
Ricardo Wurmus 92a740afac
gnu: r-genomicranges: Update to 1.26.1.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.1.
[propagated-inputs]: Add r-iranges, r-s4vectors.
2016-10-26 09:28:15 +02:00
Ricardo Wurmus 1d048589ca
gnu: r-xvector: Update to 0.14.0.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.0.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus 753bc32b8e
gnu: r-limma: Update to 3.30.0.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.0.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus 37d96f1dde
gnu: r-variantannotation: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.20.0.
[propagated-inputs]: Add r-biobase, r-biostrings, r-iranges,
r-rtracklayer, r-s4vectors, r-xvector.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus 5e48005fa9
gnu: r-edger: Update to 3.16.0.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.0.
[propagated-inputs]: Add r-locfit.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus dece310a25
gnu: r-genomeinfodb: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.0.
2016-10-26 09:28:13 +02:00
Ricardo Wurmus 7f354dafb1
gnu: r-iranges: Update to 2.8.0.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.0.
2016-10-26 09:28:13 +02:00
Ricardo Wurmus b120c5f3a2
gnu: r-s4vectors: Update to 0.12.0.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.0.
2016-10-26 09:28:13 +02:00
Ricardo Wurmus 22c5d736af
gnu: r-dnacopy: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.48.0.
2016-10-26 09:28:12 +02:00
Ricardo Wurmus 5c7b04e0c3
gnu: r-biocinstaller: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.24.0.
2016-10-26 09:28:12 +02:00
Ricardo Wurmus f0b297e17b
gnu: r-biocgenerics: Update to 0.20.0.
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.20.0.
2016-10-26 09:28:11 +02:00
Ricardo Wurmus c9b5046a18
gnu: r-grohmm: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.8.0.
2016-10-26 09:28:11 +02:00
Ricardo Wurmus 1265d3877b
gnu: r-systempiper: Update to 1.8.1.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.8.1.
2016-10-26 09:28:11 +02:00
Ricardo Wurmus b87b41a74d
gnu: r-shortread: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.0.
2016-10-26 09:28:10 +02:00
Ricardo Wurmus ae6899b683
gnu: r-gostats: Update to 2.40.0.
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.40.0.
2016-10-26 09:28:10 +02:00
Ricardo Wurmus 816599c1e7
gnu: r-category: Update to 2.40.0.
* gnu/packages/bioinformatics.scm (r-category): Update to 2.40.0.
2016-10-26 09:28:10 +02:00
Ricardo Wurmus 558d02c361
gnu: r-gseabase: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.36.0.
2016-10-26 09:28:09 +02:00
Ricardo Wurmus 700c780dcf
gnu: r-rbgl: Update to 1.50.0.
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.50.0.
2016-10-26 09:28:09 +02:00
Ricardo Wurmus 55cd914c3d
gnu: r-annotationforge: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.0.
[propagated-inputs]: Add r-rcurl.
2016-10-26 09:28:09 +02:00
Ricardo Wurmus e1db8dd813
gnu: r-deseq2: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.0.
2016-10-26 09:28:08 +02:00
Ricardo Wurmus 1e66e71921
gnu: r-genefilter: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.56.0.
2016-10-26 09:28:08 +02:00
Ricardo Wurmus 6faa2a48f0
gnu: r-geneplotter: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.52.0.
2016-10-26 09:28:08 +02:00
Ricardo Wurmus 9beba74f66
gnu: r-annotate: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.0.
2016-10-26 09:28:07 +02:00
Ricardo Wurmus 557a4b8e61
gnu: Add r-kernsmooth.
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2016-10-26 09:28:07 +02:00
Ricardo Wurmus f9875807e8
gnu: emacs-emms-player-mpv: Update to 0.0.10.
* gnu/packages/emacs.scm (emacs-emms-player-mpv): Update to 0.0.10.
2016-10-26 09:28:07 +02:00
Leo Famulari 6c18c4f603
gnu: elfutils: Update to 0.167.
* gnu/packages/elf.scm (elfutils): Update to 0.167.
2016-10-25 22:11:59 -04:00
Leo Famulari 3de764f7a7
gnu: gtk+-2: Update to 2.24.31 [fixes CVE-2013-7447].
* gnu/packages/gtk.scm (gtk+-2): Update to 2.24.31.
2016-10-25 16:33:13 -04:00
Kei Kebreau 47a04fca99
gnu: mupdf: Fix CVE-2016-8674.
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf): Use it.
2016-10-25 12:50:50 -04:00
Thomas Danckaert 4b12fe5cab
gnu: coda: Remove bundled libraries.
* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-25 14:56:37 +02:00
Mark H Weaver e9a19bde40
gnu: linux-libre@4.1: Update to 4.1.35.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.35.  Remove
patch.
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-24 22:53:18 -04:00
Thomas Danckaert d91025e3d0
gnu: Add coda.
* gnu/packages/maths.scm (coda): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:14:52 +02:00
Thomas Danckaert d3c4f3bb00
gnu: Add hdf-eos2.
* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:05:20 +02:00
Amirouche 3b5783fcd9
gnu: Add guile-bytestructures
* gnu/packages/guile.scm (guile-bytestructures): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 22:51:52 +02:00
Efraim Flashner 405be8dceb
gnu: efl: Update to 1.18.2.
* gnu/packages/enlightenment.scm (efl): Update to 1.18.2.
2016-10-24 22:01:00 +03:00
Kei Kebreau c201b28bfa
gnu: red-eclipse: Update to 1.5.6.
* gnu/packages/games.scm (red-eclipse): Update to 1.5.6.
[arguments]: Adjust phases.
2016-10-24 13:25:39 -04:00
ng0 9c798f9036
gnu: Add whois.
* gnu/packages/networking.scm (whois): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-24 17:40:53 +01:00
宋文武 bd1b1e0517
gnu: gnumeric: Use 'glib-or-gtk-build-system'.
Reported by Pjotr Prins <pjotr.public12@thebird.nl>.

* gnu/packages/gnome.scm (gnumeric)[build-systems]: Switch to
GLIB-OR-GTK-BUILD-SYSTEM.
2016-10-24 19:19:34 +08:00
Leo Famulari 02cfea6627
gnu: musl: Fix CVE-2016-8859.
* gnu/packages/patches/musl-CVE-2016-8859.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/musl.scm (musl)[source]: Use it.
2016-10-23 18:08:17 -04:00
Kei Kebreau 8e3017cc65
gnu: windowmaker: Update to 0.95.7.
* gnu/packages/gnustep.scm (windowmaker): Update to 0.95.7.
2016-10-23 17:52:28 -04:00
Arun Isaac 0f6b6cb996
gnu: gajim: Update to 0.16.6.
* gnu/packages/messaging.scm (gajim): Update to 0.16.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:40:50 -04:00
Arun Isaac d6465efaa9
gnu: gajim: License is "version 3 only".
* gnu/packages/messaging.scm (gajim)[license]: Change to GPL3.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:40:50 -04:00
ng0 2dfa90721d
gnu: weechat: Update to 1.6.
* gnu/packages/irc.scm (weechat): Update to 1.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-23 17:10:22 -04:00
Danny Milosavljevic 903276d066
gnu: Add python-flask-sqlalchemy.
* gnu/packages/python.scm (python-flask-sqlalchemy): New variable.
2016-10-23 19:41:11 +02:00
Danny Milosavljevic 31288222d4
gnu: Add python-flask-basicauth.
* gnu/packages/python.scm (python-flask-basicauth): New variable.
2016-10-23 19:41:10 +02:00
Danny Milosavljevic 999d964d64
gnu: Add python-flask-restful.
* gnu/packages/python.scm (python-flask-restful): New variable.
2016-10-23 19:31:39 +02:00
Danny Milosavljevic 0990edfecb
gnu: Add python-aniso8601.
* gnu/packages/python.scm (python-aniso8601): New variable.
2016-10-23 19:31:39 +02:00
Rene Saavedra 04ce840a82
gnu: Add bluefish.
* gnu/packages/gnome.scm (bluefish): New variable.
2016-10-23 19:26:30 +02:00
Tobias Geerinckx-Rice 373e765ec3
gnu: openconnect: Update to 7.07.
* gnu/packages/vpn.scm (openconnect): Update to 7.07.
2016-10-23 16:33:04 +02:00
Tobias Geerinckx-Rice bdc74f07c3
gnu: weex: Use ‘modify-phases’.
* gnu/packages/ftp.scm (weex): Use the ‘modify-phases’ syntax.
2016-10-23 16:33:04 +02:00
Ricardo Wurmus 5f5b57681c
gnu: Add guitarix-lv2.
* gnu/packages/audio.scm (guitarix-lv2): New variable.
2016-10-23 15:47:35 +02:00
Ricardo Wurmus 84d53724ba
gnu: Add mod-utilities.
* gnu/packages/music.scm (mod-utilities): New variable.
2016-10-23 15:47:35 +02:00
Ricardo Wurmus 3d4b1bb9a1
gnu: Add jalv-select.
* gnu/packages/music.scm (jalv-select): New variable.
2016-10-23 15:47:35 +02:00
Ricardo Wurmus c2c9e74891
gnu: Add mod-host.
* gnu/packages/music.scm (mod-host): New variable.
2016-10-23 15:47:35 +02:00
Efraim Flashner 875dc49b00
gnu: jasper: Update to 1.900.13.
* gnu/packages/image.scm (jasper): Update to 1.900.13.
[arguments]: Build with -std=c99 support.
2016-10-23 16:32:04 +03:00
ng0 5cb7974109
gnu: Add libpsyc.
* gnu/packages/psyc.scm (libpsyc): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-23 16:32:03 +03:00
ng0 3a14b2bcf6
gnu: Add perl-net-psyc.
* gnu/packages/psyc.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-23 16:32:03 +03:00
Ricardo Wurmus 860eda621b
gnu: vmpk: Remove package.
The vmpk package has been broken for a while and attempts to fix it have
failed.  The package "jack-keyboard" offers similar features.

* gnu/packages/music.scm (vmpk): Remove variable.
2016-10-23 15:06:36 +02:00
Ricardo Wurmus 1a0633e79b
gnu: Add supertuxkart.
* gnu/packages/games.scm (supertuxkart): New variable.
2016-10-23 15:05:19 +02:00
Efraim Flashner 9ba88890f7
gnu: gambit-c: Update to 4.8.5.
* gnu/packages/scheme.scm (gambit-c): Update to 4.8.5.
[source]: Update source tarball name.
2016-10-23 14:37:36 +03:00
Efraim Flashner 27668c79de
gnu: gambit-c: Use 'modify-phases' syntax.
* gnu/packages/scheme.scm (gambit-c)[arguments]: Use 'modify-phases'
syntax.
2016-10-23 14:37:36 +03:00
Efraim Flashner 71dcdaf31f
gnu: gambit-c: Update to 4.7.9.
* gnu/packages/scheme.scm (gambit-c): Update to 4.7.9.
2016-10-23 14:37:36 +03:00
Efraim Flashner fb685df8f8
gnu: bigloo: Use 'modify-phases' syntax.
* gnu/packages/scheme.scm (bigloo)[arguments]: Use 'modify-phases' syntax.
2016-10-23 14:37:36 +03:00
Efraim Flashner 04014de6f5
gnu: hop: Use 'modify-phases' syntax.
* gnu/packages/scheme.scm (hop)[arguments]: Use 'modify-phases' syntax.
2016-10-23 14:37:35 +03:00
Efraim Flashner eccd1d24c9
gnu: hop: Update to 2.5.1.
* gnu/packages/scheme.scm (hop): Update to 2.5.1.
[source]: Remove patch.
* gnu/packages/patches/hop-bigloo-4.0b.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-23 14:37:28 +03:00
Leo Famulari 5ed7f28da5
gnu: mpg321: Update to 0.3.2.
* gnu/packages/mp3.scm (mpg321): Update to 0.3.2.
2016-10-23 05:01:02 -04:00
Leo Famulari d78b652c16
gnu: mpg123: Update to 1.23.8.
* gnu/packages/mp3.scm (mpg123): Update to 1.23.8.
2016-10-23 04:55:26 -04:00
Efraim Flashner 844f4f6e62
gnu: beast: Disable parallel-build.
* gnu/packages/music.scm (beast)[arguments]: Disable parallel builds to
prevent a race condition.
2016-10-23 07:47:03 +03:00
Efraim Flashner d661894159
gnu: infamous-plugins: Remove compiler optimizations.
* gnu/packages/audio.scm (infamous-plugins)[arguments]: Add phase
removing built-in compiler optimizations in the source code.
2016-10-23 07:47:03 +03:00
Efraim Flashner 7ca6830482
gnu: python2-validictory: Add missing input.
* gnu/packages/python.scm (python2-validictory)[native-inputs]: Add
python2-setuptools.
(python-validictory)[properties]: New field.
2016-10-23 07:47:03 +03:00
Efraim Flashner ff1e2b59bf
gnu: ffmpeg: Update to 3.1.5.
* gnu/packages/video.scm (ffmpeg): Update to 3.1.5.
2016-10-23 07:47:03 +03:00
Efraim Flashner 04ed5444fe
gnu: mutt: Update to 1.7.1.
* gnu/packages/mail.scm (mutt): Update to 1.7.1.
2016-10-23 07:47:03 +03:00
ng0 ad6198a5f9
gnu: Add vim-full.
* gnu/packages/vim.scm (vim-full): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-23 07:47:02 +03:00
Efraim Flashner 84a79b8c42
gnu: aria2: Update to 1.28.0.
* gnu/packages/bittorrent.scm (aria2): Update to 1.28.0.
2016-10-23 07:46:49 +03:00
Mark H Weaver 35680748a6
gnu: linux-libre: Update to 4.8.4.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.4.
2016-10-23 00:21:20 -04:00
Mark H Weaver 62cf3ae09b
gnu: linux-libre@4.4: Update to 4.4.27.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.27.
2016-10-23 00:18:42 -04:00
John Darrington 0881b616f4
gnu: guile-ncurses: Update to version 2.0.
* gnu/packages/guile.scm (guile-ncurses): Update version to 2.0.
2016-10-22 17:24:39 +02:00
Alex Sassmannshausen ed53a07145
gnu: perl-test-mockobject: Update to 1.20150527.
* gnu/packages/perl.scm (perl-test-mockobject): Update to 1.20150527.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-22 02:20:15 -04:00
Nicolas Goaziou 3ae48df120
gnu: wireshark: Update to 2.2.1.
* gnu/packages/networking.scm (wireshark): Update to 2.2.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-22 02:20:15 -04:00
Nicolas Goaziou a4c7f40cec
gnu: giac-xcas: Update to 1.2.2-95.
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-95.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-22 02:20:10 -04:00
Mark H Weaver a861665b75
gnu: linux-libre@4.1: Add fix for CVE-2016-5195.
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre-4.1): Add patch.
2016-10-22 00:30:38 -04:00
Mark H Weaver 64de7d1ceb
gnu: make-linux-libre: Add #:patches keyword argument.
* gnu/packages/linux.scm (make-linux-libre): Add 'patches' keyword
argument.
2016-10-22 00:22:31 -04:00
Leo Famulari 57147c5d34
gnu: go-1.7: Update to 1.7.3.
* gnu/packages/golang.scm (go-1.7): Update to 1.7.3.
2016-10-21 19:03:21 -04:00
Leo Famulari bc8aa24b15
gnu: mpv: Update to 0.21.0.
* gnu/packages/video.scm (mpv): Update to 0.21.0.
2016-10-21 15:56:43 -04:00
Christopher Allan Webber 7d2ee59b4a
gnu: slim: Fix line numbers in slim-login.patch.
This was causing build failures.

* gnu/packages/patches/slim-login.patch: Fix line numbers.
2016-10-21 12:51:33 -05:00
Tobias Geerinckx-Rice 666619d088
gnu: lrzip: Update to 0.631.
* gnu/packages/compression.scm (lrzip): Update to 0.631.
2016-10-21 05:14:32 +02:00
Eric Bavier 17d50dfdbb
gnu: slim: Display login message.
* gnu/packages/patches/slim-login.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/display-managers.scm (slim)[source]: Use it.
2016-10-20 16:47:20 -05:00
Eric Bavier 0b71c15c80
gnu: slim: Do not reset session after failed login.
* gnu/packages/patches/slim-reset.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/display-managers.scm (slim)[source]: Use it.
2016-10-20 16:47:19 -05:00
Leo Famulari 5d5cdb7ca4
gnu: linux-libre-4.4: Update to 4.4.26.
* gnu/packages/linux.scm (linux-libre): Update to 4.4.26.
2016-10-20 17:42:49 -04:00
Leo Famulari 88576735bf
gnu: linux-libre: Update to 4.8.3.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.3.
2016-10-20 17:42:49 -04:00
Roel Janssen d6e5de1ed2
gnu: Add emacs-d-mode.
* gnu/packages/emacs.scm (emacs-d-mode): New variable.
2016-10-20 22:26:41 +02:00
Ludovic Courtès 7f8393f3eb
gnu: python-mailmanclient: Fix typo.
* gnu/packages/mail.scm (python-mailmanclient)[properties]: Fix typo.
2016-10-20 15:44:48 +02:00
ng0 6d3dda4ff5
gnu: Add python-mailmanclient.
* gnu/packages/mail.scm (python-mailmanclient): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-20 11:47:12 +03:00
Hartmut Goebel 162e42d8c0
gnu: Add python-validictory and python2-validictory.
* gnu/packages/python.scm (python-validictory, python2-validictory):
  New variables.
2016-10-20 10:27:22 +02:00
Hartmut Goebel b7703c8131
gnu: Add python2-pathlib2.
Adding only the Python 2 variant, since for Python 3 our minimum version
is 3.4 which already includes this package as part of the standard library.

gnu/packages/python.scm (python2-pathlib2): New variable.
2016-10-20 10:09:59 +02:00
Hartmut Goebel 8ab59181a4
gnu: Add python-setproctitle and python2-setproctitle.
* gnu/packages/python.scm (python-setproctitle, python2-setproctitle):
  New variables.
2016-10-20 09:55:19 +02:00
Hartmut Goebel 9518fde1a1
gnu: Add chromaprint.
* gnu/packages/mp3.scm (chromaprint): New variable.
2016-10-20 09:55:19 +02:00
Roel Janssen 4644644ace
gnu: Add r-bioccheck.
* gnu/packages/bioinformatics.scm (r-bioccheck): New variable.
2016-10-20 09:53:02 +02:00
Leo Famulari c645cef7da
gnu: openssh: Fix CVE-2016-8858.
* gnu/packages/patches/openssh-memory-exhaustion.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
2016-10-19 18:02:39 -04:00
Rene Saavedra 3ad7dce1d9
gnu: Add gucharmap.
* gnu/packages/gnome.scm (gucharmap): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-19 23:20:19 +02:00
Carlos Sánchez de La Lama 80c9164fd7
gnu: %static-inputs: Use bash from PATH in bootstrap tar.
gnu/packages/make-bootstrap.scm (%static-inputs): Use bash from PATH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-19 23:20:19 +02:00
Leo Famulari c21b1a1fbb
gnu: borg: Install more documentation.
* gnu/packages/backup.scm (borg)[arguments]: Install more documentation in
'install-doc' phase. Use (srfi srfi-26).
2016-10-19 16:00:26 -04:00
Tobias Geerinckx-Rice b332c823b7
gnu: gparted: Update to 0.27.0.
* gnu/packages/disk.scm (gparted): Update to 0.27.0.
2016-10-19 19:34:17 +02:00
Tobias Geerinckx-Rice f5d3773268
gnu: ncftp: Use ‘modify-phases’.
* gnu/packages/ftp.scm (ncftp): Use the ‘modify-phases’ syntax.
2016-10-19 19:34:17 +02:00
Tobias Geerinckx-Rice c17b5986f2
gnu: mcelog: Update to 143.
* gnu/packages/linux.scm (mcelog): Update to 143.
2016-10-19 19:34:17 +02:00
Tobias Geerinckx-Rice 5e270e8e8f
gnu: lftp: Update to 4.7.3.
* gnu/packages/ftp.scm (lftp): Update to 4.7.3.
[source]: Use HTTPS. Remove patch.
[arguments]: Add ‘disable-impure-tests’ phase. Add #:configure-flags with
explicit location of readline headers.
[home-page]: Use HTTPS.
* gnu/packages/patches/lftp-dont-save-unknown-host-fingerprint.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-19 19:34:17 +02:00
Leo Famulari d5ccf71ec6
gnu: awscli: Update to 1.11.5.
* gnu/packages/python.scm (awscli): Update to 1.11.5.
[source]: Use pypi-uri.
[inputs]: Add python-s3transfer.
2016-10-19 13:12:48 -04:00
Leo Famulari 94cffc6386
gnu: Add python-s3transfer.
* gnu/packages/python.scm (python-s3transfer, python2-s3transfer): New
variable.
2016-10-19 13:12:48 -04:00
Leo Famulari e09f952d9f
gnu: python-botocore: Update to 1.4.62.
* gnu/packages/python.scm (python-botocore, python2-botocore): Update to 1.4.62.
2016-10-19 13:12:47 -04:00
Leo Famulari ecd68c53a6
gnu: python-rsa: Update to 3.4.2.
* gnu/packages/python.scm (python-rsa, python2-rsa): Update to 3.4.2.
2016-10-19 13:12:47 -04:00
Leo Famulari def6213f65
gnu: Add libseccomp.
* gnu/packages/linux.scm (libseccomp): New variable.
2016-10-19 13:01:31 -04:00
Marius Bakke 6de9dfce80
gnu: xapian: Update to 1.4.0.
* gnu/packages/search.scm (xapian): Update to 1.4.0.
[source]: Use https URL.
[home-page]: Use https URL.
[arguments]: Remove 'patch-remotetcp-harness' phase. Replace 'check'
phase with a list of custom test targets.
2016-10-19 17:00:51 +01:00
Marius Bakke 16a23d4ad2
gnu: xapian: Use 'modify-phases' syntax.
* gnu/packages/search.scm (xapian)[arguments]: Use 'modify-phases'. Fix
'/bin/sh' substitution to use (which "sh") instead of (which "bash").
2016-10-19 17:00:43 +01:00
Marius Bakke 6cf27c89a5
gnu: notmuch: Enable tests.
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/mail.scm (notmuch)[source]: Use patch.
[arguments]: Add verbose make flags. Add phase 'patch-notmuch-lib.el' to
fix hard-coded /bin/sh. Add 'prepare-test-environment' phase to patch
test shebangs and set environment.
[native-inputs]: Change from 'emacs-minimal' to 'emacs-no-x'. Add dtach,
gnupg, man, perl and which.
2016-10-19 17:00:37 +01:00
Marius Bakke 540d6cc711
gnu: notmuch: Update to 0.23.
* gnu/packages/mail.scm (notmuch): Update to 0.23.
[home-page]: Use https URL.
(python-notmuch)[version]: Inherit from notmuch.
[home-page]: Ditto.
2016-10-19 17:00:24 +01:00
ng0 152ffe7cb6
gnu: Add opensmtpd-extras.
* gnu/packages/mail.scm (opensmtpd-extras): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-19 17:37:16 +03:00
ng0 8b53366c63
gnu: Add opensmtpd.
* gnu/packages/mail.scm (opensmtpd): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-19 17:32:49 +03:00
ng0 71f048c624
gnu: Add libasr.
* gnu/packages/dns.scm (libasr): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-19 17:28:06 +03:00
Efraim Flashner c11933c920
gnu: zile: Use 'modify-phases' syntax.
* gnu/packages/zile.scm (zile)[arguments]: Use 'modify-phases' syntax.
2016-10-19 17:10:17 +03:00
Efraim Flashner fa216a4d01
gnu: zile: Update to 2.4.13.
* gnu/packages/zile.scm (zile): Update to 2.4.13.
[home-page]: Use https.
2016-10-19 17:10:17 +03:00
Ludovic Courtès 4534d85e70
gnu: Add Ao.
* gnu/packages/engineering.scm (ao): New variable.
2016-10-19 15:54:10 +02:00
Ludovic Courtès a966281f2d
gnu: glfw: Propagate the relevant inputs.
* gnu/packages/gl.scm (glfw)[inputs]: Rename to...
[propagated-inputs]: ... this.  Add LIBXXF86VM.
2016-10-19 15:54:10 +02:00
Roel Janssen 99df12cd19
gnu: Add r-biocstyle.
* gnu/packages/bioinformatics.scm (r-biocstyle): New variable.
2016-10-19 15:22:06 +02:00
Roel Janssen 207ce8fbe5
gnu: Add r-biocviews.
* gnu/packages/bioinformatics.scm (r-biocviews): New variable.
2016-10-19 15:09:55 +02:00
Benz Schenk b747718e23
gnu: Add iperf.
* gnu/packages/networking.scm (iperf): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-19 13:19:07 +01:00
Hartmut Goebel b5a5fb1927
gnu: python-dateutil, python-dateutil-2: Update to new home-page.
* gnu/packages/python.scm (python-dateutil, python2-dateutil,
  python-dateutil-2, python2-dateutil-2)[home-page]: Update URL.
2016-10-19 11:52:54 +02:00
Roel Janssen c79ad57a8d
gnu: Add r-optparse.
* gnu/packages/bioinformatics.scm (r-optparse): New variable.
2016-10-19 10:48:56 +02:00
Roel Janssen 2acaaee550
gnu: Add r-getopt.
* gnu/packages/bioinformatics.scm (r-getopt): New variable.
2016-10-19 09:55:45 +02:00
Federico Beffa 7d95c0006a
gnu: Add GHC 8.0.1.
* gnu/packages/haskell.scm (ghc-8): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 1bd00f1737
gnu: Add ghc-hashtables.
* gnu/packages/haskell.scm (ghc-hashtables): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa db61a00971
gnu: Add ghc-easyplot.
* gnu/packages/haskell.scm (ghc-easyplot): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 4225c7116d
gnu: Add ghc-hmatrix-gsl-stats.
* gnu/packages/haskell.scm (ghc-hmatrix-gsl-stats): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 271a5365aa
gnu: Add ghc-hmatrix-special.
* gnu/packages/haskell.scm (ghc-hmatrix-special): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 932104abce
gnu: Add ghc-hmatrix-gsl.
* gnu/packages/haskell.scm (ghc-hmatrix-gsl): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 95595618b1
gnu: Add ghc-hmatrix.
* gnu/packages/haskell.scm (ghc-hmatrix): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 725dddd7fb
gnu: Add ghc-storable-complex.
* gnu/packages/haskell.scm (ghc-storable-complex): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa fb6d2d75f3
gnu: Add chez-fmt.
* gnu/packages/chez.scm (chez-fmt): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 87d6c9ef8a
gnu: Add chez-irregex.
* gnu/packages/chez.scm (chez-irregex): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 387541907f
gnu: Add chez-matchable
* gnu/packages/chez.scm (chez-matchable): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 74f9c19092
gnu: Add chez-sockets
* gnu/packages/chez.scm (chez-sockets): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 4dfe4eee55
gnu: Add chez-web
* gnu/packages/chez.scm (chez-web): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa c344b85dd0
gnu: Add chez-srfi.
* gnu/packages/chez.scm (chez-srfi): New variable.
2016-10-19 08:44:11 +02:00
Federico Beffa 13bbc0cc94
gnu: chez-scheme: Move to new module.
* gnu/packages/scheme.scm (chez-scheme, nanopass, stex): Move variables ...
* gnu/packages/chez.scm (chez-scheme, nanopass, stex): ... here. New module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
2016-10-19 08:44:11 +02:00
Federico Beffa f7616df4af
gnu: chez-scheme: Fix i686 build.
* gnu/packages/scheme.scm (chez-scheme): Add 'configure-flags', generalize
  'configure' phase and simplify 'install-doc' phase.
2016-10-19 08:44:11 +02:00
Federico Beffa 4b86dde0d6
gnu: chez-scheme: Add search-path.
* gnu/packages/scheme.scm (chez-scheme)[native-search-paths]: New field.
2016-10-19 08:44:11 +02:00
Christopher Allan Webber 3d1fe340db
gnu: kobodeluxe: Indicate origin of kobodeluxe-paths.patch.
* gnu/packages/patches/kobodeluxe-paths.patch: Update header, pointing
  to Debian tarball for provenance.
2016-10-18 20:35:01 -05:00
Leo Famulari ca121ae8d7
gnu: mariadb: Update to 10.1.18.
* gnu/packages/databases.scm (mariadb): Update to 10.1.18.
2016-10-18 21:32:11 -04:00
Leo Famulari 0cf3a7259b
gnu: mysql: Update to 5.7.16.
* gnu/packages/databases.scm (mysql): Update to 5.7.16.
2016-10-18 21:32:03 -04:00
Stephen Webber a56145e1fa
gnu: Add kobodeluxe.
* gnu/packages/games.scm (kobodeluxe): New variable.
* gnu/packages/patches/kobodeluxe-paths.patch: New file.
* gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch: New file.
* gnu/packages/patches/kobodeluxe-const-charp-conversion.patch: New file.
* gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch: New file.
* gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch: New file.
* gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-10-18 20:23:03 -05:00
ng0 91988aee12
gnu: torsocks: Update to 2.2.0.
* gnu/packages/patches/torsocks-dns-test.patch: Delete file.
* gnu/local.mk: Remove it.
* gnu/packages/tor.scm (torsocks): Update to 2.2.0.
[source]: Remove patch. Change method from 'git-fetch' to 'url-fetch'.
Remove 'file-name'.
[arguments]: Remove 'bootstrap' phase.
[native-inputs]: Remove autoconf, automake and libtool. Also remove
obsoleted perl-test-harness.
[home-page]: Use https URL.
(define-module): Don't import perl.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-18 23:45:06 +01:00
Andreas Enge 15ca49b220
gnu: hdf4: Really fix non-x86 architectures.
This is a follow-up to commit 60da9fb110.

* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/maths.scm (hdf4)[source]: Add patch.
2016-10-18 21:15:43 +02:00
Efraim Flashner 1dc30f9232
gnu: enlightenment: Update to 0.21.3.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.3.
2016-10-18 08:57:54 +03:00
Efraim Flashner 00bfd498f9
gnu: tor: Update to 0.2.8.9.
* gnu/packages/tor.scm (tor): Update to 0.2.8.9.
2016-10-18 00:25:30 +03:00
Efraim Flashner a31ac11385
gnu: vapoursynth: Update to 34.
* gnu/packages/video.scm (vapoursynth): Update to 34.
2016-10-18 00:08:09 +03:00
Efraim Flashner 8ee04627d8
gnu: zimg: Update to 2.3.
* gnu/packages/image.scm (zimg): Update to 2.3.
2016-10-18 00:07:20 +03:00
Efraim Flashner b333d00c35
gnu: jasper: Update to 1.900.5.
* gnu/packages/image.scm (jasper): Update to 1.900.5.
[source]: Remove patches.
[native-inputs]: Remove unzip.
* gnu/packages/patches/jasper-CVE-2007-2721.patch,
gnu/packages/patches/jasper-CVE-2008-3520.patch,
gnu/packages/patches/jasper-CVE-2008-3522.patch,
gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch,
gnu/packages/patches/jasper-CVE-2014-8137.patch,
gnu/packages/patches/jasper-CVE-2014-8138.patch,
gnu/packages/patches/jasper-CVE-2014-8157.patch,
gnu/packages/patches/jasper-CVE-2014-8158.patch,
gnu/packages/patches/jasper-CVE-2014-9029.patch,
gnu/packages/patches/jasper-CVE-2016-1577.patch,
gnu/packages/patches/jasper-CVE-2016-1867.patch,
gnu/packages/patches/jasper-CVE-2016-2089.patch,
gnu/packages/patches/jasper-CVE-2016-2116.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-10-17 23:51:38 +03:00
Leo Famulari 6ace9f80f1
gnu: diffoscope: Update to 61.
* gnu/packages/package-management.scm (diffoscope): Update to 61.
2016-10-17 16:39:46 -04:00
John Darrington 040b6299d5
gnu: openssh: Enable kerberos features.
* gnu/packages/ssh.scm (openssh) [arguments]: Add flag --with-kerberos5.
[inputs]: Add mit-krb5.
2016-10-17 21:52:53 +02:00
Mark H Weaver cd829fe306
gnu: linux-libre: Update to 4.8.2.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.2.
2016-10-17 15:23:46 -04:00
Mark H Weaver 43f1d02ddc
gnu: linux-libre@4.4: Update to 4.4.25.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.25.
2016-10-17 15:22:33 -04:00
Rene Saavedra 0bd697591b
gnu: Add xpad.
* gnu/packages/gnome.scm (xpad): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-10-17 15:09:31 -04:00
Ricardo Wurmus 5093729704
gnu: Add rcas-web.
* gnu/packages/bioinformatics.scm (rcas-web): New variable.
2016-10-17 18:09:20 +02:00
Ricardo Wurmus 89984be46e
gnu: Add r-rcas.
* gnu/packages/bioinformatics.scm (r-rcas): New variable.
2016-10-17 18:09:16 +02:00
Ricardo Wurmus f90b2dbdb7
gnu: irrlicht: Update to 1.8.4.
* gnu/packages/games.scm (irrlicht): Update to 1.8.4.
[arguments]: Delete phase "apply-patch/mesa-10-fix".
[native-inputs]: Remove "patch/mesa-10-fix".
* gnu/packages/patches/irrlicht-mesa-10.patch: Delete file.
* gnu/local.mk (dist_path_DATA): Remove irrlicht patch.
2016-10-17 17:11:51 +02:00
Ricardo Wurmus b8a35ccea6
gnu: extremetuxracer: Update to 0.7.3.
* gnu/packages/games.scm (extremetuxracer): Update to 0.7.3.
[inputs]: Remove freetype, mesa, libice, libpng, sdl, sdl-mixer,
sdl-image, libsm, libunwind, libx11, libext, libxi, libxmu, libxt, tcl,
zlib; add sfml.
[arguments]: Remove field.
2016-10-17 17:11:43 +02:00
Ricardo Wurmus a6e25a50f9
gnu: sfml: Install pkgconfig files.
* gnu/packages/game-development.scm (sfml)[arguments]: Add configure
flag to install pkgconfig files.
2016-10-17 17:11:37 +02:00
Adonay Felipe Nogueira 8a666bc5cb
gnu: artanis: Remove implied $(DESTDIR) usage.
* gnu/packages/patches/artanis-fix-Makefile.in.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/guile.scm (artanis)[source]: Use patch.
[arguments]: Remove DESTDIR from #:make-flags.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-17 15:20:11 +01:00
Al McElrath dd04f56a2b
gnu: node: Update to 6.8.0.
Remove <https://debbugs.gnu.org/23744> and
<https://debbugs.gnu.org/23723> workaround.

* gnu/packages/node.scm (node): Update to 6.8.0.
  (node)[arguments]: Disabled more tests. Remove custom 'patch-shebangs'
  phase. Manually patch npm script shebang in new 'patch-npm-shebang'
  phase.
* gnu/packages/patches/node-9077.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-17 11:55:49 +02:00
Ben Woodcroft a8de0d1ec4
gnu: ruby-json-pure: Fix tests.
* gnu/packages/ruby.scm (ruby-json-pure)[arguments]: Remove unneeded
reference to 'json-java.gemspec' in 'Gemfile'.
2016-10-17 19:17:53 +10:00
Ben Woodcroft b8004a7b79
gnu: bundler: Update to 1.13.5.
* gnu/packages/ruby.scm (bundler): Update to 1.13.5.
2016-10-17 19:17:52 +10:00
Hartmut Goebel cb0866c325
gnu: Add geierlein.
* gnu/packages/finance.scm (geierlein): New variable.
2016-10-17 10:39:21 +02:00
Tobias Geerinckx-Rice 4fb5f83099
gnu: Add sslh.
* gnu/packages/networking.scm (sslh): New variable.
2016-10-17 02:02:15 +02:00
Tobias Geerinckx-Rice 2f96872727
gnu: httping: Update to 2.5.
* gnu/packages/networking.scm (httping): Update to 2.5.
2016-10-17 02:02:15 +02:00
Julien Lepiller f3e222165e
gnu: Add fbida.
* gnu/packages/pdf.scm (fbida): New variable.
2016-10-16 14:00:18 -04:00
Andreas Enge 60da9fb110
gnu: hdf4: Fix non-x86 architectures.
* gnu/packages/patches/hdf4-architectures.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/maths.scm (hdf4)[source]: Add patch.
2016-10-16 17:00:56 +02:00
Leo Famulari f349d36e48
gnu: certbot, python-acme: Update to 0.9.3.
These packages should be updated together.

* gnu/packages/tls.scm (certbot): Update to 0.9.3.
[source]: Use pypi-uri.
(python-acme, python2-acme): Update to 0.9.3.
[source]: Use pypi-uri.
2016-10-16 09:26:36 -04:00
Leo Famulari 6c514128ec
gnu: python-dnspython: Update to 0.15.0.
* gnu/packages/python.scm (python-dnspython, python2-dnspython): Update
to 0.15.0.
2016-10-16 09:26:35 -04:00
Leo Famulari 0580e383c2
gnu: python-werkzeug: Update to 0.11.11.
* gnu/packages/python.scm (python-werkzeug, python2-werkzeug):
Update to 0.11.11.
2016-10-16 09:26:35 -04:00
Leo Famulari eb68d2685a
gnu: python-pyopenssl: Update to 16.1.0.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update
to 16.1.0
[source]: Use pypi-uri.
2016-10-16 09:26:35 -04:00
Leo Famulari caa0edb36c
gnu: python-pyasn1: Update to 0.1.9.
* gnu/packages/python.scm (python-pyasn1, python2-pyasn1): Update to 0.1.9.
[source]: Use pypi-uri.
2016-10-16 09:26:29 -04:00
Ricardo Wurmus b7afd01893
gnu: Add python-whoosh.
* gnu/packages/python.scm (python-whoosh, python2-whoosh): New variables.
2016-10-16 12:55:43 +02:00
Theodoros Foradis 569f601649
gnu: Add arm-none-eabi-toolchain variants.
* gnu/packages/embedded.scm (arm-none-eabi-toolchain): New procedure.
(arm-none-eabi-toolchain-4.9, arm-none-eabi-nano-toolchain-4.9,
arm-none-eabi-toolchain-6, arm-none-eabi-nano-toolchain-6): New
variables.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2016-10-16 11:53:11 +02:00
Theodoros Foradis dbc3c34ea0
gnu: Add arm-none-eabi-gcc-6.
* gnu/packages/embedded.scm (gcc-arm-none-eabi-6): New variable.
* gnu/packages/patches/gcc-6-arm-none-eabi-multilib.patch: New file.
* gnu/packages/patches/gcc-6-cross-environment-variables.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patches.
2016-10-16 11:53:07 +02:00
Leo Famulari f4a4b854e0
gnu: youtube-dl: Update to 2016-10-16.
* gnu/packages/video.scm (youtube-dl): Update to 2016-10-16.
2016-10-15 21:11:42 -04:00
Andy Patterson fcb9b9340f
gnu: dbus-1.10.12: Fix search paths.
Add the patches from dbus's source field back into its replacement. This ensures
that the grafted dbus package can find its services on GuixSD.

This is a follow-up to commit 34f9582aad.

* gnu/packages/glib.scm (dbus-1.10.12)[source]: Inherit from dbus.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-15 18:13:58 -04:00
Efraim Flashner 5f01e1bbc6
gnu: assimp: Update to 3.3.1.
* gnu/packages/graphics.scm (assimp): Update to 3.3.1.
[native-inputs]: Remove unzip.
2016-10-15 23:22:47 +03:00
Efraim Flashner 608bf1d38b
gnu: jsoncpp: Update to 1.7.7.
* gnu/packages/serialization.scm (jsoncpp): Update to 1.7.7.
2016-10-15 23:22:46 +03:00
Efraim Flashner 43593f5bc4
gnu: cereal: Update to 1.2.1.
* gnu/packages/serialization.scm (cereal): Update to 1.2.1.
2016-10-15 23:22:46 +03:00
Efraim Flashner d0cddec230
gnu: picocom: Update to 2.2.
* gnu/packages/terminals.scm (picocom): Update to 2.2.
2016-10-15 23:22:46 +03:00
Efraim Flashner 66bb5db7ab
gnu: termite: Use 'modify-phases' syntax.
* gnu/packages/terminals.scm (termite)[arguments]: Use 'modify-phases'
syntax.
2016-10-15 23:22:45 +03:00
Efraim Flashner ebe3515f78
gnu: termite: Update to 12.
* gnu/packages/terminals.scm (termite): Update to 12.
2016-10-15 23:22:45 +03:00
Efraim Flashner 9bf160a3d0
gnu: libgit2: Update to 0.24.2.
* gnu/packages/version-control.scm (libgit2): Update to 0.24.2.
[home-page]: Use https.
2016-10-15 23:22:45 +03:00
Efraim Flashner c2a3b23fba
gnu: abcde: Update to 2.7.2.
* gnu/packages/cdrom.scm (abcde): Update to 2.7.2.
[arguments]: Correct sysconfdir location.
2016-10-15 23:22:44 +03:00
Efraim Flashner 2e36f7e6b2
gnu: qt: Update to 5.6.2.
* gnu/packages/qt.scm (qt): Update to 5.6.2.
[home-page]: Update to new home-page.
2016-10-15 23:22:33 +03:00
Leo Famulari e1376e25a7
gnu: gd: Fix CVE-2016-8670.
* gnu/packages/patches/gd-CVE-2016-8670.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
2016-10-15 15:31:49 -04:00
Ricardo Wurmus 7bc2f3ac14
gnu: guitarix: Update to 0.35.2.
* gnu/packages/audio.scm (guitarix): Update to 0.35.2.
2016-10-15 09:22:30 +02:00
Ricardo Wurmus b74d79dc5a
gnu: gx-switchless-wah-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-switchless-wah-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:35 +02:00
Ricardo Wurmus 759318fd77
gnu: gx-slow-gear-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-slow-gear-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:35 +02:00
Ricardo Wurmus 349753743f
gnu: gx-vintage-fuzz-master-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-vintage-fuzz-master-lv2)[arguments]: Add
phase "escape-shell-commands".
2016-10-14 23:45:35 +02:00
Ricardo Wurmus c6e45a93d4
gnu: gx-super-fuzz-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-super-fuzz-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:35 +02:00
Ricardo Wurmus 2dedc16b04
gnu: gx-voodoo-fuzz-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-voodoo-fuzz-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:34 +02:00
Ricardo Wurmus b9ac372c55
gnu: gx-hyperion-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-hyperion-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:34 +02:00
Ricardo Wurmus 9d54b12a49
gnu: gx-saturator-lv2: Fix SSE detection.
* gnu/packages/music.scm (gx-saturator-lv2)[arguments]: Add phase
"escape-shell-commands".
2016-10-14 23:45:34 +02:00
Alex Vong b280e67ca6
gnu: libraw: Update to 0.17.2 [fixes CVE-2015-{8366,8367}].
* gnu/packages/photo.scm (libraw): Update to 0.17.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-14 13:24:23 -04:00
Efraim Flashner 4a2798e067
gnu: freeimage: Use 'modify-phases' syntax.
* gnu/packages/image.scm (freeimage)[arguments]: Use 'modify-phases'
syntax.
2016-10-14 13:43:12 +03:00
Efraim Flashner 76e8566c1b
gnu: freeimage: Fix CVE-2016-5684.
* gnu/packages/image.scm (freeimage)[source]: Add patch.
* gnu/packages/patches/freeimage-CVE-2016-5684.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-10-14 13:42:43 +03:00
Hartmut Goebel 0350a8bb1e
gnu: mail: Add notifymuch.
* gnu/packages/mail.scm (notifymuch): New variable.
2016-10-14 11:27:14 +02:00
Leo Famulari 34f9582aad
gnu: dbus: Replace with 1.10.12 [security fix].
Fixes <https://bugs.freedesktop.org/show_bug.cgi?id=98157>
"format string vulnerability processing ActivationFailure messages"

* gnu/packages/glib.scm (dbus)[replacement]: New field.
(dbus-1.10.12): New variable.
2016-10-13 22:48:02 -04:00
Ricardo Wurmus a9f55bf218
gnu: Add jack-keyboard.
* gnu/packages/music.scm (jack-keyboard): New variable.
2016-10-13 22:50:46 +02:00
Ricardo Wurmus d75e8f5a92
gnu: Add gx-switchless-wah-lv2.
* gnu/packages/music.scm (gx-switchless-wah-lv2): New variable.
2016-10-13 22:50:46 +02:00
Ricardo Wurmus 631f817586
gnu: Add gx-slow-gear-lv2.
* gnu/packages/music.scm (gx-slow-gear-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 40bffdfa2a
gnu: Add gx-vintage-fuzz-master-lv2.
* gnu/packages/music.scm (gx-vintage-fuzz-master-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 29f632220c
gnu: Add gx-super-fuzz-lv2.
* gnu/packages/music.scm (gx-super-fuzz-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 32536f0058
gnu: Add gx-voodoo-fuzz-lv2.
* gnu/packages/music.scm (gx-voodoo-fuzz-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 894122382e
gnu: Add gx-hyperion-lv2.
* gnu/packages/music.scm (gx-hyperion-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 664f677fdc
gnu: Add gx-saturator-lv2.
* gnu/packages/music.scm (gx-saturator-lv2): New variable.
2016-10-13 22:50:45 +02:00
Ricardo Wurmus 3eb1a9643b
gnu: Add gx-suppa-tone-bender-lv2.
* gnu/packages/music.scm (gx-suppa-tone-bender-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus 4d4bfdc29b
gnu: Add gx-push-pull-lv2.
* gnu/packages/music.scm (gx-push-pull-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus 4d95cd306b
gnu: Add gx-tone-mender-lv2.
* gnu/packages/music.scm (gx-tone-mender-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus cdc7a021b5
gnu: Add gx-overdriver-lv2.
* gnu/packages/music.scm (gx-overdriver-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus 85ae347ee7
gnu: Add gx-vbass-preamp-lv2.
* gnu/packages/music.scm (gx-vbass-preamp-lv2): New variable.
2016-10-13 22:50:44 +02:00
Ricardo Wurmus 49604680cd
gnu: Add gx-guvnor-lv2.
* gnu/packages/music.scm (gx-guvnor-lv2): New variable.
2016-10-13 22:50:43 +02:00
Arun Isaac 71d3ee1cbb
gnu: Add emacs-nginx-mode.
* gnu/packages/emacs.scm (emacs-nginx-mode): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
2016-10-13 22:32:16 +03:00
ng0 2edbfbf588
gnu: Add emacs-evil.
* gnu/packages/emacs.scm (emacs-evil): New variable.

Co-authored-by: Alex Kost <alezost@gmail.com>
2016-10-13 22:32:04 +03:00
ng0 ce74e52011
gnu: Add emacs-goto-chg.
* gnu/packages/emacs.scm (emacs-goto-chg): New variable.

Co-authored-by: Alex Kost <alezost@gmail.com>
2016-10-13 22:31:51 +03:00
Hartmut Goebel 7a8894e803
gnu: python-pathlib: Update description.
* gnu/packages/python.scm (python-pathlib, python2-pathlib): Update
  description.
2016-10-13 17:22:42 +02:00