3c441be0f3
gnu: r-kernlab: Update to 0.9-26.
...
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-26.
2018-05-31 13:21:31 +02:00
ad016826c9
gnu: r-rmysql: Update to 0.10.15.
...
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.15.
2018-05-31 13:21:31 +02:00
aea3be250c
gnu: r-mice: Update to 3.0.0.
...
* gnu/packages/cran.scm (r-mice): Update to 3.0.0.
[propagated-inputs]: Add r-broom, r-dplyr, r-mitml, and r-rlang.
2018-05-31 13:21:31 +02:00
6034a62a1b
gnu: r-callr: Update to 2.0.4.
...
* gnu/packages/cran.scm (r-callr): Update to 2.0.4.
[propagated-inputs]: Add r-processx; remove r-assertthat, r-crayon, r-debugme,
and r-testthat.
2018-05-31 13:21:31 +02:00
a8b4677b7c
gnu: r-openxlsx: Update to 4.1.0.
...
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.
[propagated-inputs]: Add r-zip.
2018-05-31 13:21:31 +02:00
e86d3cc501
gnu: r-shinyace: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.1.
[propagated-inputs]: Add r-jsonlite.
2018-05-31 13:21:31 +02:00
a80606308a
gnu: r-processx: Update to 3.1.0.
...
* gnu/packages/cran.scm (r-processx): Update to 3.1.0.
[propagated-inputs]: Remove r-debugme; add r-testthat.
2018-05-31 13:21:31 +02:00
9944399ae3
gnu: r-ggally: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-ggally): Update to 1.4.0.
[inputs]: Add libressl.
[propagated-inputs]: Add r-rlang.
2018-05-31 13:21:31 +02:00
13079c143b
gnu: r-psych: Update to 1.8.4.
...
* gnu/packages/cran.scm (r-psych): Update to 1.8.4.
2018-05-31 13:21:31 +02:00
aadb9ee6df
gnu: r-pillar: Update to 1.2.3.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.2.3.
2018-05-31 13:21:31 +02:00
65ea783f6c
gnu: r-utf8: Update to 1.1.4.
...
* gnu/packages/cran.scm (r-utf8): Update to 1.1.4.
2018-05-31 13:21:31 +02:00
c36745cf95
gnu: r-ggjoy: Update to 0.4.1.
...
* gnu/packages/cran.scm (r-ggjoy): Update to 0.4.1.
2018-05-31 13:21:31 +02:00
cda93e8399
gnu: r-dtw: Update to 1.20-1.
...
* gnu/packages/cran.scm (r-dtw): Update to 1.20-1.
2018-05-31 13:21:31 +02:00
fabf09934b
gnu: r-ica: Update to 1.0-2.
...
* gnu/packages/cran.scm (r-ica): Update to 1.0-2.
2018-05-31 13:21:31 +02:00
1e31e8bc74
gnu: r-sm: Update to 2.2-5.5.
...
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.5.
2018-05-31 13:21:31 +02:00
da5cca36b7
gnu: r-hardyweinberg: Update to 1.6.1.
...
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.1.
2018-05-31 13:21:31 +02:00
0759d87dfc
gnu: r-ggrepel: Update to 0.8.0.
...
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.0.
2018-05-31 13:21:31 +02:00
b13b56743b
gnu: r-cvst: Update to 0.2-2.
...
* gnu/packages/cran.scm (r-cvst): Update to 0.2-2.
2018-05-31 13:21:31 +02:00
975ea10d6f
gnu: r-energy: Update to 1.7-4.
...
* gnu/packages/cran.scm (r-energy): Update to 1.7-4.
2018-05-31 13:21:31 +02:00
90f1ecb939
gnu: r-emdbook: Update to 1.3.10.
...
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.10.
2018-05-31 13:21:31 +02:00
0acbf8bbb7
gnu: r-inline: Update to 0.3.15.
...
* gnu/packages/cran.scm (r-inline): Update to 0.3.15.
2018-05-31 13:21:31 +02:00
207c497e14
gnu: r-ff: Update to 2.2-14.
...
* gnu/packages/cran.scm (r-ff): Update to 2.2-14.
2018-05-31 13:21:31 +02:00
c81497b141
gnu: r-rcpp: Update to 0.12.17.
...
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.17.
2018-05-31 13:21:31 +02:00
5479e3e639
gnu: r-abbyyr: Update to 0.5.4.
...
* gnu/packages/cran.scm (r-abbyyr): Update to 0.5.4.
2018-05-31 13:21:31 +02:00
11de8673d1
gnu: Add r-bibtex.
...
* gnu/packages/cran.scm (r-bibtex): New variable.
2018-05-31 13:21:31 +02:00
9f56ceecf3
gnu: Add r-reticulate.
...
* gnu/packages/cran.scm (r-reticulate): New variable.
2018-05-31 13:21:31 +02:00
d182828f53
gnu: Add r-zip.
...
* gnu/packages/cran.scm (r-zip): New variable.
2018-05-31 13:21:31 +02:00
84e7147ae3
gnu: Add r-mitml.
...
* gnu/packages/cran.scm (r-mitml): New variable.
2018-05-31 13:21:31 +02:00
03e718fbb1
gnu: Add r-pan.
...
* gnu/packages/cran.scm (r-pan): New variable.
2018-05-31 13:21:31 +02:00
fe1495e35c
gnu: Add r-jomo.
...
* gnu/packages/cran.scm (r-jomo): New variable.
2018-05-31 13:21:31 +02:00
3ca317359c
gnu: r-vegan: Update to 2.5-2.
...
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-2.
2018-05-31 13:21:31 +02:00
966e9575a3
gnu: linux-libre@4.14: Update to 4.14.47.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.47.
(%linux-libre-4.14-hash): Update hash.
(linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus-4.14)
(linux-libre-4.14): Remove patch.
2018-05-31 04:17:22 -04:00
55b68174aa
gnu: linux-libre@4.9: Update to 4.9.105.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.105.
Remove patch.
2018-05-31 04:16:05 -04:00
2aab213e36
gnu: linux-libre@4.4: Update to 4.4.135.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.135.
Remove patch.
2018-05-31 04:14:57 -04:00
d2dde99e99
gnu: mariadb: Update to 10.1.33.
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.33.
2018-05-31 08:45:58 +03:00
88a3465e4a
gnu: linux-libre: Revert bad upstream patch in 4.14/4.9/4.4 kernels.
...
Apply the 1-line revert from upstream that was the sole fix in 4.14.47,
4.9.105, and 4.4.135. Here we cherry-pick the patch until the corresponding
linux-libre versions are released.
* gnu/packages/linux.scm (linux-libre-4.14, linux-libre-4.9)
(linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus-4.14)
(linux-libre-4.4): Add the patch.
2018-05-31 00:23:41 -04:00
706d6190ca
gnu: 0ad: Update to 0.0.23-alpha.
...
* gnu/packages/games.scm (0ad-data, 0ad): Update to 0.0.23-alpha.
[source]: Use HTTPS URL.
[inputs]: Add libsodium.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-31 00:21:47 -04:00
e9ae846667
gnu: knot: Update to 2.6.7.
...
* gnu/packages/dns.scm (knot): Update to 2.6.7.
2018-05-31 04:54:58 +02:00
51c4fb007a
gnu: duperemove: Update to 0.11.
...
* gnu/packages/disk.scm (duperemove): Update to 0.11.
2018-05-31 04:54:58 +02:00
42d93a32ee
gnu: sakura: Update to 3.6.0.
...
* gnu/packages/terminals.scm (sakura): Update to 3.6.0.
2018-05-31 04:54:58 +02:00
4ef1d9fd8b
gnu: stunnel: Update to 5.46.
...
* gnu/packages/web.scm (stunnel): Update to 5.46.
2018-05-31 04:54:57 +02:00
6c4d1413f2
gnu: mkvtoolnix: Use INVOKE.
...
* gnu/packages/video.scm (mkvtoolnix)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:57 +02:00
8d5960d1b1
gnu: liba52: Use INVOKE.
...
* gnu/packages/video.scm (liba52)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:57 +02:00
3103101ec9
gnu: aalib: Use INVOKE.
...
* gnu/packages/video.scm (aalib)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:56 +02:00
d840f6b98a
gnu: xapian: Use INVOKE.
...
* gnu/packages/search.scm (xapian)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:56 +02:00
6c738fe9e7
gnu: khal: Use INVOKE.
...
* gnu/packages/calendar.scm (khal)[arguments]: Substitute INVOKE for
SYSTEM* and explicitly return #t from phases where needed.
2018-05-31 04:54:56 +02:00
4133914416
gnu: rss-bridge: Use INVOKE.
...
* gnu/packages/web.scm (rss-bridge)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:55 +02:00
a145d7e9af
gnu: python-clf: Use INVOKE.
...
* gnu/packages/web.scm (python-clf)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:55 +02:00
b8150fa091
gnu: python-internetarchive: Use INVOKE.
...
* gnu/packages/web.scm (python-internetarchive)[arguments]: Substitute
INVOKE for SYSTEM*.
2018-05-31 04:54:54 +02:00
16b5dafc4d
gnu: httptunnel: Use INVOKE.
...
* gnu/packages/web.scm (httptunnel)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:54 +02:00
2cdc719193
gnu: surfraw: Use INVOKE.
...
* gnu/packages/web.scm (surfraw)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:53 +02:00
9cd760f13f
gnu: gumbo-parser: Use INVOKE.
...
* gnu/packages/web.scm (gumbo-parser)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:53 +02:00
7f4e5f19fa
gnu: sassc: Use INVOKE.
...
* gnu/packages/web.scm (sassc)[arguments]: Substitute INVOKE for SYSTEM*
and its plumbing.
2018-05-31 04:54:53 +02:00
b5d587055b
gnu: tidy: Use INVOKE.
...
* gnu/packages/web.scm (tidy)[arguments]: Substitute INVOKE for SYSTEM*.
2018-05-31 04:54:52 +02:00
946e5e8aa1
gnu: tipp10: Use INVOKE.
...
* gnu/packages/education.scm (tipp10)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:52 +02:00
aa0771556e
gnu: krona-tools: Use INVOKE.
...
* gnu/packages/web.scm (krona-tools)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:51 +02:00
359375e649
gnu: fcgiwrap: Use INVOKE.
...
* gnu/packages/web.scm (fcgiwrap)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:51 +02:00
e80c05ac3e
gnu: ffmpeg: Use INVOKE.
...
* gnu/packages/video.scm (ffmpeg)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:50 +02:00
512f22f9e8
gnu: r-dplyr: Update to 0.7.5.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.5.
[propagated-inputs]: Add r-tidyselect.
2018-05-31 04:54:50 +02:00
fc55fe2ef7
gnu: s6-rc: Update to 0.4.0.1.
...
* gnu/packages/skarnet.scm (s6-rc): Update to 0.4.0.1.
2018-05-31 04:54:50 +02:00
1608969b03
gnu: skalibs: Update to 2.6.4.0.
...
* gnu/packages/skarnet.scm (skalibs): Update to 2.6.4.0.
2018-05-31 04:54:49 +02:00
2c65c085f9
gnu: lchat: Mark up description.
...
* gnu/packages/suckless.scm (lchat)[description]: Use @code.
2018-05-31 04:54:48 +02:00
82f22fac9f
gnu: lchat: Update to 0.0.0-3.f951919.
...
* gnu/packages/suckless.scm (lchat): Update to 0.0.0-3.f951919.
[arguments]: Run tests. Install man page.
2018-05-31 04:54:48 +02:00
aa945bf637
gnu: human: Update to 0.3.
...
* gnu/packages/suckless.scm (human): Update to 0.3.
[source]: Use version as the tag, and GIT-FILE-NAME.
2018-05-31 04:54:48 +02:00
8f7c6a5ff7
gnu: sent: Update to 1.
...
* gnu/packages/suckless.scm (sent): Update to 1.
[source]: Switch to URL-FETCH/TARBALL.
2018-05-31 04:54:47 +02:00
fc1a7b58d7
gnu: st: Update to 0.8.1.
...
* gnu/packages/suckless.scm (st): Update to 0.8.1.
[arguments]: Relax ‘inhibit-terminfo-install’ regular expression.
2018-05-31 04:54:47 +02:00
504d16dd04
gnu: spoon: Update to 0.6.
...
* gnu/packages/suckless.scm (spoon): Update to 0.6.
2018-05-31 04:54:46 +02:00
a66fb3a14e
gnu: isync: Add zlib compression support.
...
This adds ~400 KiB (.5%) to isync's now-73.1 MiB closure.
* gnu/packages/mail.scm (isync)[inputs]: Add ZLIB.
2018-05-30 23:46:53 +02:00
370e87fdbb
gnu: linux-libre: Update to 4.16.13.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.13.
(%linux-libre-hash): Update hash.
2018-05-30 14:59:47 -04:00
49e67982eb
gnu: linux-libre@4.14: Update to 4.14.46.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.46.
(%linux-libre-4.14-hash): Update hash.
2018-05-30 14:58:49 -04:00
f9e1c2d72a
gnu: linux-libre@4.9: Update to 4.9.104.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.104.
2018-05-30 14:58:09 -04:00
13fcbf3cce
gnu: linux-libre@4.4: Update to 4.4.134.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.134.
2018-05-30 14:57:22 -04:00
6f8f98df7f
gnu: scribus: Fix build against Qt 5.11.
...
* gnu/packages/scribus.scm (scribus)[arguments]: Add a 'patch-source' phase
that includes missing headers.
2018-05-30 20:45:17 +02:00
d0e23e3940
gnu: vlc: Update to 3.0.3, and add more inputs.
...
Co-authored-by: Roel Janssen <roel@gnu.org>
* gnu/packages/video.scm (vlc): Update to 3.0.3.
[native-inputs]: Add flex, bison, and gettext-minimal.
[inputs]: Replace ffmpeg-2.8 with the latest ffmpeg. Replace lua-5.1 with
lua-5.2. Add eudev, fribidi, libarchive, libass, libavc1394, libbluray,
libcaca, libdca, libdvdnav, libdvdread, libebml, libidn, libmatroska,
libmodplug, libmpeg2, libraw1394, librsvg, libsecret, libupnp, libva,
libvdpau, libvpx, libx264, qtsvg, samba, speexdsp, taglib, twolame, unzip,
wayland, and wayland-protocols.
[arguments]: Add BUILDCC=gcc to configure-flags. In the 'patch-source' phase,
remove a vestigial substitution fix, enable the use of fribidi deprecated
interfaces, and adjust the file names in substitutions from "gui/qt4" to
"gui/qt". Move the 'regenerate-plugin-cache' phase after 'strip', and in it,
set the timestamps to 1 second after the epoch, and use 'invoke'. Add new
'wrap-executable' phase.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2018-05-30 11:02:57 +02:00
cfcd9a4551
gnu: wireshark: End phase with #t.
...
* gnu/packages/networking.scm (wireshark)[arguments]: End 'patch-source' phase
with #t.
2018-05-30 11:02:52 +02:00
3fe0d36027
gnu: perl-text-format: Update to 0.61.
...
* gnu/packages/perl.scm (perl-text-format): Update to 0.61.
2018-05-30 10:06:57 +02:00
2847d833be
gnu: python-oslo.utils: Update to 3.36.2.
...
* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.36.2.
2018-05-30 10:06:57 +02:00
a21bcd7079
Revert "gnu: swig: Patch for Octave 4.4."
...
This reverts commit 3771000f89
2018-05-30 02:18:26 -04:00
bfc25e015d
gnu: xpra: Update to 2.3.1.
...
* gnu/packages/xorg.scm (xpra): Update to 2.3.1.
[inputs]: Add libxi.
2018-05-30 08:14:23 +02:00
7cb8d092d5
gnu: linux-libre@4.1: Update to 4.1.52.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.52.
2018-05-29 23:16:14 -04:00
f274f0774d
gnu: tiled: Update to 1.1.5.
...
* gnu/packages/game-development.scm (tiled): Update to 1.1.5.
2018-05-29 21:20:27 -04:00
9cf879a573
gnu: Add go-github-com-gorilla-context.
...
* gnu/packages/golang.scm (go-github-com-gorilla-context): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
daed2c5e6a
gnu: Add go-github-com-google-gofuzz.
...
* gnu/packages/golang.scm (go-github-com-google-gofuzz): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
73fe19ef28
gnu: Add go-github-com-google-cadvisor.
...
* gnu/packages/golang.scm (go-github-com-google-cadvisor): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
7979f7df9a
gnu: Add go-github-com-emicklei-go-restful.
...
* gnu/packages/golang.scm (go-github-com-emicklei-go-restful): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
67836c5956
gnu: Add go-github-com-blang-semver.
...
* gnu/packages/golang.scm (go-github-com-blang-semver): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
7c2ebbd4a6
gnu: Add go-github-com-urfave-cli.
...
* gnu/packages/golang.scm (go-github-com-urfave-cli): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:05 -04:00
5a14e81e41
gnu: Update shogun to 6.1.3.
...
* gnu/packages/machine-learning.scm (shogun): Update to 6.1.3.
[source]: Update snippet to remove proprietary software.
[arguments]: Rewrite list of symlinks in 'delete-broken-symlinks' phase.
Rewrite file lists given to substitute* in 'change-R-target-path' and
'fix-octave-modules' phases. Adjust 'fix-octave-modules' for the update.
Add 'move-rxcpp' phase. Rewrite configure-flags for the update.
[inputs]: Add eigen.
[native-inputs]: Add rxcpp.
2018-05-29 18:20:38 -04:00
3771000f89
gnu: swig: Patch for Octave 4.4.
...
* gnu/packages/swig.scm (swig)[source]: Add patch.
* gnu/packages/patches/swig-octave-patches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-05-29 18:20:38 -04:00
44884a9df8
gnu: eigen: Include unsupported features.
...
* gnu/packages/algebra.scm (eigen)[source]: Do not build the tests for
unsupported features, but include the files.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2018-05-29 18:20:38 -04:00
3a354e104a
gnu: Add rxcpp.
...
* gnu/packages/machine-learning.scm (rxcpp): New variable.
2018-05-29 18:20:37 -04:00
de658cc2f8
gnu: octave: Update to 4.4.0.
...
* gnu/packages/maths.scm (octave): Update to 4.4.0.
2018-05-29 18:20:37 -04:00
f0dd127d0a
gnu: mpd: Update to 0.20.20.
...
* gnu/packages/mpd.scm (mpd): Update to 0.20.20.
2018-05-29 18:00:34 -04:00
b50196c3a4
gnu: Git: Update to 2.17.1 [fixes CVE 2018-{11234,11235}].
...
* gnu/packages/version-control.scm (git): Update to 2.17.1.
2018-05-29 16:00:02 -04:00
0eeade9b53
gnu: pan: Update to 0.145.
...
* gnu/packages/mail.scm (pan): Update to 0.145.
2018-05-29 20:43:38 +02:00
3b68a9b66e
gnu: disorderfs: Update to 0.5.3.
...
* gnu/packages/file-systems.scm (disorderfs): Update to 0.5.3.
[source]: Update upstream URI and re-use VERSION.
2018-05-29 20:43:37 +02:00
e5ab03b51d
gnu: thefuck: Update to 3.27.
...
* gnu/packages/admin.scm (thefuck): Update to 3.27.
2018-05-29 20:43:37 +02:00
e3d779cc93
gnu: Wireshark: Update to 2.6.1.
...
* gnu/packages/networking.scm (wireshark): Update to 2.6.1.
2018-05-29 14:39:22 -04:00
4d0f463d6b
gnu: xdg-utils: Update to 1.1.3 [fixes CVE-2017-18266].
...
* gnu/packages/freedesktop.scm (xdg-utils): Update to 1.1.3.
2018-05-29 14:39:22 -04:00
201f2c8769
vm: Remove unneeded dependency on Guile-JSON.
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Fixes <https://bugs.gnu.org/31581 >.
Reported by Leo Famulari <leo@famulari.name>.
* gnu/system/vm.scm: Remove unneeded (guix docker) import.
2018-05-29 18:29:36 +02:00
Ricardo Wurmus