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43137 Commits

Author SHA1 Message Date
Ricardo Wurmus e9437c5b4a
gnu: r-rlang: Update to 0.3.4. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.4.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 00d14a4156
gnu: r-ggplot2: Update to 3.1.1. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.1.1.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 79d8fdcce3
gnu: r-nlme: Update to 3.1-139. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-139.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 9f2a87d1bf
gnu: r-pracma: Update to 2.2.5. 
* gnu/packages/maths.scm (r-pracma): Update to 2.2.5.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus be5385eb83
gnu: r-wgcna: Update to 1.67. 
* gnu/packages/cran.scm (r-wgcna): Update to 1.67.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus d1ed092e83
gnu: r-reinforcelearn: Update to 0.2.1. 
* gnu/packages/cran.scm (r-reinforcelearn): Update to 0.2.1.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 000b3ef96f
gnu: r-huge: Update to 1.3.2. 
* gnu/packages/cran.scm (r-huge): Update to 1.3.2.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 4c920fbbd5
gnu: r-summarytools: Update to 0.9.3. 
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.3.
[propagated-inputs]: Add r-tibble.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus a108ef6209
gnu: r-remotes: Update to 2.0.4. 
* gnu/packages/cran.scm (r-remotes): Update to 2.0.4.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 3517101521
gnu: r-usethis: Update to 1.5.0. 
* gnu/packages/cran.scm (r-usethis): Update to 1.5.0.
[propagated-inputs]: Add r-purrr, r-withr, and r-yaml.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus a26bd4718b
gnu: r-tinytex: Update to 0.12. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.12.
 2019-04-11 23:37:23 +02:00
Ricardo Wurmus 1235f0d3a2
gnu: r-broom: Update to 0.5.2. 
* gnu/packages/cran.scm (r-broom): Update to 0.5.2.
 2019-04-11 23:37:23 +02:00
Ricardo Wurmus a315d49633
gnu: r-ddalpha: Update to 1.3.9. 
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.9.
 2019-04-11 23:37:23 +02:00
Ricardo Wurmus 1e0b0a2ec2
gnu: r-rvest: Update to 0.3.3. 
* gnu/packages/cran.scm (r-rvest): Update to 0.3.3.
 2019-04-11 23:37:23 +02:00
Ricardo Wurmus c4a50a8a47
gnu: r-genomicfeatures: Update to 1.34.8. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.8.
 2019-04-11 23:37:19 +02:00
Eric Bavier a6de569ea2
gnu: creduce: Upgrade to 2.8.0. 
* gnu/packages/debug.scm (creduce): Upgrade to 2.8.0.
[inputs]: Use llvm-6 and clang-6.  Remove perl-sys-cpu.
[arguments]: Use custom 'check phase.
 2019-04-11 12:17:01 -05:00
Ludovic Courtès 544265acba
colors: Add 'colorize-matches'. 
* guix/colors.scm (colorize-matches): New procedure.
(color-rules): Rewrite in terms of 'colorize-matches'.
 2019-04-11 18:18:13 +02:00
Ludovic Courtès 2569ef9dab
colors: Introduce a disjoint type and pre-compute ANSI escapes. 
* guix/colors.scm (color-table, color): Remove.
(<color>): New record type.
(print-color): New procedure.
(define-color-table, color): New macros.
(color-codes->ansi): New procedure.
(%reset): New variable.
(colorize-string): Rewrite accordingly.
(color-rules): Adjust accordingly.
* guix/status.scm (print-build-event): Adjust to new 'colorize-string'
interface.
* guix/ui.scm (%highlight-argument): Likewise.
(%warning-colors, %info-colors, %error-colors, %hint-colors)
(%highlight-colors): Remove.
(%warning-color, %info-color, %error-color, %hint-color)
(%highlight-color): New variables.
 2019-04-11 18:18:13 +02:00
Ludovic Courtès c1df77e215
guix gc: '-d' does not attempt to delete non-user-owned roots. 
* guix/scripts/gc.scm (guix-gc)[delete-generations]: Limit to user-owned
roots, unless we're running as root.
 2019-04-11 18:18:13 +02:00
Ricardo Wurmus c2f6f4e500
gnu: Add python2-checkm-genome. 
* gnu/packages/bioinformatics.scm (python2-checkm-genome): New variable.
 2019-04-11 17:54:57 +02:00
Ricardo Wurmus 4fa16c9ae6
gnu: Add tensorflow. 
* gnu/packages/machine-learning.scm (tensorflow): New variable.
 2019-04-11 17:54:57 +02:00
Danny Milosavljevic d0a39b928c
gnu: make-linux-libre: Install "Module.symvers". 
* gnu/packages/linux.scm (make-linux-libre): Install "Module.symvers".
 2019-04-11 17:54:11 +02:00
Pierre Neidhardt 6a8c4b9e11
gnu: Add vhba-module. 
* gnu/packages/linux.scm (vhba-module): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-11 17:52:52 +02:00
Danny Milosavljevic ce6312999f
Add (guix build-system linux-module). 
* guix/build/linux-module-build-system.scm: New file.
* guix/build-system/linux-module.scm: New file.
* doc/guix.texi (Build Systems): Document it.
* Makefile.am (MODULES): Add them.
 2019-04-11 17:50:18 +02:00
Ricardo Wurmus 12327d7447
gnu: guitarix: Update to 0.38.1. 
* gnu/packages/audio.scm (guitarix): Update to 0.38.1.
 2019-04-11 17:18:08 +02:00
Ricardo Wurmus 36f4f1e297
gnu: Add pplacer. 
* gnu/packages/bioinformatics.scm (pplacer, pplacer-scripts): New variables.
 2019-04-11 17:18:08 +02:00
Ricardo Wurmus fb168a310e
gnu: ocaml-mcl: Do not use unstable tarball. 
* gnu/packages/machine-learning.scm (ocaml-mcl)[source]: Use git-fetch.
 2019-04-11 17:18:08 +02:00
Ricardo Wurmus b24aaeec45
gnu: ocaml-mcl: Build with latest OCaml. 
* gnu/packages/machine-learning.scm (ocaml-mcl)[arguments]: Remove #:ocaml
and #:findlib arguments; patch code in build phase.
[native-inputs]: Add ocamlbuild.
 2019-04-11 17:17:22 +02:00
Ricardo Wurmus ddb5dc08a7
gnu: Add ocaml-gsl-1. 
* gnu/packages/ocaml.scm (ocaml-gsl-1): New variable.
 2019-04-11 17:11:41 +02:00
Tobias Geerinckx-Rice e70771f08e
gnu: httrack: Correct licence prefix. 
This follows up on commit ed132a57c1.

* gnu/packages/web.scm (httrack)[license]: Use the right prefix.
 2019-04-11 14:25:05 +02:00
Nicolas Goaziou ed132a57c1
gnu: Add httrack. 
* gnu/packages/web.scm (httrack): New variable.
 2019-04-11 14:04:54 +02:00
HiPhish 9abfbd79cb
gnu: neovim: Depend on Lua 5.1, not 5.2. 
* gnu/packages/vim.scm (neovim): Use correct Lua version as dependencies

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-04-11 13:46:40 +02:00
Vagrant Cascadian 8b87b1bf00
gnu: arm-trusted-firmware: Update to 2.1. 
* gnu/packages/firmware (arm-trusted-firmware): Update to 2.1.
  (arm-trusted-firmware-sun50i-a64)[source]: Inherit from
  arm-trusted-firmware.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-04-11 13:46:40 +02:00
Brian Leung 585fb83acb
gnu: Add emacs-evil-visualstar. 
* gnu/packages/emacs-xyz.scm (emacs-evil-visualstar): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-04-11 13:46:40 +02:00
Brian Leung 80955ad634
gnu: Add emacs-evil-visual-replace. 
* gnu/packages/emacs-xyz.scm (emacs-evil-visual-replace): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-04-11 13:46:40 +02:00
Brian Leung a99e7f524e
gnu: Add emacs-evil-nerd-commenter. 
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-04-11 13:46:40 +02:00
Brian Leung 6d53111385
gnu: Add emacs-evil-expat. 
* gnu/packages/emacs-xyz.scm (emacs-evil-expat): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-04-11 13:46:40 +02:00
Brian Leung f89cc6bdf9
gnu: Add emacs-evil-lion. 
* gnu/packages/emacs-xyz.scm (emacs-evil-lion): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-04-11 13:46:40 +02:00
Brian Leung 2feaffb17c
gnu: Add emacs-evil-text-object-python. 
* gnu/packages/emacs-xyz.scm (emacs-evil-text-object-python): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-04-11 13:46:39 +02:00
Brian Leung 91af509751
gnu: Add emacs-evil-indent-plus. 
* gnu/packages/emacs-xyz.scm (emacs-evil-indent-plus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-04-11 13:46:39 +02:00
Brian Leung f74a90bf6c
gnu: Add emacs-evil-replace-with-register. 
* gnu/packages/emacs-xyz.scm (emacs-evil-replace-with-register): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-04-11 13:46:39 +02:00
Brian Leung eccf816b64
gnu: Add emacs-evil-exchange. 
* gnu/packages/emacs-xyz.scm (emacs-evil-exchange): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-04-11 13:46:39 +02:00
Brian Leung ab0471e9fc
gnu: Add emacs-janpath-evil-numbers. 
* gnu/packages/emacs-xyz.scm (emacs-janpath-evil-numbers): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-04-11 13:46:39 +02:00
Ivan Petkov 6d511a53cf
gnu: rust: Update to 1.33.0 
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.32): ...this.
(rust): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-04-11 13:46:39 +02:00
frozenpigs 02394462fc
services: sddm: Switch back to using ‘startx’. 
* gnu/services/sddm.scm (sddm-configuration-file):
Use XORG-START-COMMAND.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-04-11 05:42:41 +02:00
Tobias Geerinckx-Rice f86b4b56b1
gnu: sbcl-trivial-garbage: Don't use unstable tarball. 
* gnu/packages/lisp.scm (sbcl-trivial-garbage)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-11 05:42:41 +02:00
Tobias Geerinckx-Rice 0471c00109
gnu: sbcl-babel: Don't use unstable tarball. 
* gnu/packages/lisp.scm (sbcl-babel)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-11 05:42:41 +02:00
Tobias Geerinckx-Rice 9769caa991
gnu: sbcl-trivial-features: Don't use unstable tarball. 
* gnu/packages/lisp.scm (sbcl-trivial-features)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-11 05:42:41 +02:00
Tobias Geerinckx-Rice 4d2c51dec2
gnu: stumpwm: Don't use unstable tarball. 
* gnu/packages/lisp.scm (stumpwm)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-11 05:42:41 +02:00
Tobias Geerinckx-Rice eabcf02efd
gnu: sbcl-cl-ppcre: Don't use unstable tarball. 
* gnu/packages/lisp.scm (sbcl-cl-ppcre)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-11 05:42:40 +02:00