081af9fae7
gnu: r-hdf5r: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-hdf5r): Update to 1.0.1.
2018-10-30 21:47:46 +01:00
08645fcff5
gnu: r-fansi: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-fansi): Update to 0.4.0.
2018-10-30 21:47:37 +01:00
7608984fe9
gnu: r-later: Update to 0.7.5.
...
* gnu/packages/cran.scm (r-later): Update to 0.7.5.
2018-10-30 21:47:28 +01:00
80234d3294
gnu: r-maptools: Update to 0.9-4.
...
* gnu/packages/cran.scm (r-maptools): Update to 0.9-4.
2018-10-30 21:47:20 +01:00
fda8dd58c2
gnu: r-shinyace: Update to 0.3.2.
...
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.2.
2018-10-30 21:47:06 +01:00
02c57c018a
gnu: r-np: Update to 0.60-9.
...
* gnu/packages/cran.scm (r-np): Update to 0.60-9.
2018-10-30 21:46:57 +01:00
44de41b572
gnu: r-expm: Update to 0.999-3.
...
* gnu/packages/cran.scm (r-expm): Update to 0.999-3.
2018-10-30 21:46:48 +01:00
484e81f73a
gnu: r-cubature: Update to 1.4-1.
...
* gnu/packages/cran.scm (r-cubature): Update to 1.4-1.
2018-10-30 21:46:36 +01:00
905734fd7c
gnu: r-extradistr: Update to 1.8.10.
...
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.10.
2018-10-30 21:46:26 +01:00
534bf85b9d
gnu: r-ttr: Update to 0.23-4.
...
* gnu/packages/cran.scm (r-ttr): Update to 0.23-4.
2018-10-30 21:46:17 +01:00
dda4ce560f
gnu: r-tinytex: Update to 0.9.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.9.
2018-10-30 21:46:10 +01:00
a8de3090d8
gnu: r-xfun: Update to 0.4.
...
* gnu/packages/cran.scm (r-xfun): Update to 0.4.
2018-10-30 21:46:00 +01:00
8c456dff26
gnu: r-fitdistrplus: Update to 1.0-11.
...
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.0-11.
[propagated-inputs]: Add r-npsurv.
2018-10-30 21:45:51 +01:00
bba80fadbe
gnu: r-magic: Update to 1.5-9.
...
* gnu/packages/cran.scm (r-magic): Update to 1.5-9.
2018-10-30 21:45:42 +01:00
5621b8403b
gnu: r-sm: Update to 2.2-5.6.
...
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.6.
2018-10-30 21:45:32 +01:00
870faab4b7
gnu: r-xts: Update to 0.11-1.
...
* gnu/packages/cran.scm (r-xts): Update to 0.11-1.
2018-10-30 21:45:16 +01:00
16a39c2d56
gnu: r-ggridges: Update to 0.5.1.
...
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.1.
2018-10-30 21:45:07 +01:00
9e82d6080e
gnu: r-cli: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-cli): Update to 1.0.1.
2018-10-30 21:44:59 +01:00
2b8126a4ec
gnu: r-reshape: Update to 0.8.8.
...
* gnu/packages/cran.scm (r-reshape): Update to 0.8.8.
2018-10-30 21:44:48 +01:00
ecdfca05c8
gnu: r-ffbase: Update to 0.12.5.
...
* gnu/packages/cran.scm (r-ffbase): Update to 0.12.5.
2018-10-30 21:44:38 +01:00
674c818560
gnu: r-rcpp: Update to 0.12.19.
...
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.19.
2018-10-30 21:44:28 +01:00
0ab28e5450
gnu: r-pkgload: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-pkgload): Update to 1.0.1.
2018-10-30 21:43:38 +01:00
2657e666cb
gnu: r-pkgbuild: Update to 1.0.2.
...
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.2.
[propagated-inputs]: Add r-cli and r-prettyunits.
2018-10-30 21:43:28 +01:00
7e127ab128
gnu: r-ps: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-ps): Update to 1.2.0.
2018-10-30 21:43:19 +01:00
b62e104b84
gnu: r-ape: Update to 5.2.
...
* gnu/packages/cran.scm (r-ape): Update to 5.2.
2018-10-30 21:43:10 +01:00
1c9906c2dd
gnu: r-reprex: Update to 0.2.1.
...
* gnu/packages/cran.scm (r-reprex): Update to 0.2.1.
[propagated-inputs]: Add r-fs, remove r-knitr.
2018-10-30 21:42:59 +01:00
6b451c0801
gnu: r-gprofiler: Update to 0.6.7.
...
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.7.
2018-10-30 21:42:48 +01:00
4fc6609a0c
gnu: r-keggrest: Update to 1.20.2.
...
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.2.
2018-10-30 21:42:39 +01:00
67cfb83ff1
gnu: r-msnbase: Update to 2.6.4.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.4.
2018-10-30 21:42:31 +01:00
807d961cc9
gnu: r-methylkit: Update to 1.6.3.
...
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.3.
2018-10-30 21:42:20 +01:00
ac0166450d
gnu: r-wgcna: Update to 1.66.
...
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.66.
2018-10-30 21:42:09 +01:00
1182460750
gnu: r-go-db: Update to 3.6.0.
...
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.6.0.
2018-10-30 21:42:00 +01:00
466bf3af89
gnu: r-genomicfeatures: Update to 1.32.3.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.3.
2018-10-30 21:41:12 +01:00
dd0216e0e7
gnu: r-delayedarray: Update to 0.6.6.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.6.
2018-10-30 21:40:57 +01:00
72408357fa
gnu: r-genomicranges: Update to 1.32.7.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.7.
2018-10-30 21:40:48 +01:00
9dad1957ab
gnu: r-limma: Update to 3.36.5.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.5.
2018-10-30 21:40:40 +01:00
57cf6a14f0
gnu: r-edger: Update to 3.22.5.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.5.
2018-10-30 21:40:32 +01:00
eb890466fa
gnu: r-genomeinfodbdata: Update to 1.1.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.1.0.
2018-10-30 21:40:22 +01:00
e563acb96b
gnu: r-iranges: Update to 2.14.12.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.12.
2018-10-30 21:40:12 +01:00
192c19f484
gnu: r-vegan: Update to 2.5-3.
...
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-3.
2018-10-30 21:40:00 +01:00
696e1ce263
gnu: r-graph: Update to 1.58.2.
...
* gnu/packages/bioconductor.scm (r-graph): Update to 1.58.2.
2018-10-30 21:39:50 +01:00
6ab5670aba
gnu: r-nloptr: Update to 1.2.1.
...
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.1.
[native-inputs]: Add r-knitr and gfortran.
2018-10-30 21:39:39 +01:00
c5bd8a7c23
gnu: r-devtools: Update to 2.0.1.
...
* gnu/packages/statistics.scm (r-devtools): Update to 2.0.1.
[propagated-inputs]: Remove r-whisker; add r-callr, r-cli, r-pkgbuild,
r-pkgload, r-rcmdcheck, r-remotes, r-sessioninfo, and r-usethis.
2018-10-30 21:39:29 +01:00
aa99568639
gnu: r-evaluate: Update to 0.12.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.12.
[propagated-inputs]: Remove r-stringr.
2018-10-30 21:39:16 +01:00
60aac7ec16
gnu: r-robustbase: Update to 0.93-3.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-3.
2018-10-30 21:39:06 +01:00
16508df1d3
gnu: r-cardata: Update to 3.0-2.
...
* gnu/packages/statistics.scm (r-cardata): Update to 3.0-2.
2018-10-30 21:38:55 +01:00
98a4b9d040
gnu: r-zoo: Update to 1.8-4.
...
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-4.
2018-10-30 21:38:35 +01:00
834f203c07
gnu: r-tidyselect: Update to 0.2.5.
...
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.5.
2018-10-30 21:38:25 +01:00
33fb92aacd
gnu: r-doparallel: Update to 1.0.14.
...
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.14.
2018-10-30 21:38:16 +01:00
3ea7aefd59
gnu: r-snow: Update to 0.4-3.
...
* gnu/packages/statistics.scm (r-snow): Update to 0.4-3.
2018-10-30 21:38:03 +01:00
62a7492c90
gnu: r-plotrix: Update to 3.7-4.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-4.
2018-10-30 21:37:53 +01:00
943cab4f72
gnu: r-rstudioapi: Update to 0.8.
...
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.8.
2018-10-30 21:37:35 +01:00
960425c9e3
gnu: r-commonmark: Update to 1.6.
...
* gnu/packages/statistics.scm (r-commonmark): Update to 1.6.
2018-10-30 21:37:25 +01:00
e028eaa992
gnu: r-coda: Update to 0.19-2.
...
* gnu/packages/statistics.scm (r-coda): Update to 0.19-2.
2018-10-30 21:37:14 +01:00
672ba7494b
gnu: r-data-table: Update to 1.11.8.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.8.
2018-10-30 21:37:03 +01:00
f75ee8c691
gnu: r-dplyr: Update to 0.7.7.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.7.
2018-10-30 21:36:54 +01:00
17f6198f06
gnu: r-rlang: Update to 0.3.0.1.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.0.1.
2018-10-30 21:36:44 +01:00
822863f8f9
gnu: r-r6: Update to 2.3.0.
...
* gnu/packages/statistics.scm (r-r6): Update to 2.3.0.
2018-10-30 21:36:35 +01:00
3a83251c4f
gnu: r-testthat: Update to 2.0.1.
...
* gnu/packages/statistics.scm (r-testthat): Update to 2.0.1.
2018-10-30 21:36:24 +01:00
cb448dd251
gnu: r-microbenchmark: Update to 1.4-6.
...
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-6.
2018-10-30 21:36:13 +01:00
9f7438355d
gnu: r-mine: Update to 0.6.
...
* gnu/packages/statistics.scm (r-mine): Update to 0.6.
2018-10-30 21:36:04 +01:00
9413424d2d
gnu: r-ggplot2: Update to 3.1.0.
...
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.1.0.
2018-10-30 21:35:52 +01:00
058394967c
gnu: r-digest: Update to 0.6.18.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.18.
2018-10-30 21:35:40 +01:00
b85f805090
gnu: r-mgcv: Update to 1.8-25.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-25.
2018-10-30 21:35:26 +01:00
2f5e8f6094
gnu: r-mass: Update to 7.3-51.
...
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.
2018-10-30 21:35:12 +01:00
2ea75a8369
gnu: Add r-npsurv.
...
* gnu/packages/cran.scm (r-npsurv): New variable.
2018-10-30 21:35:03 +01:00
7c7ee6cf4c
gnu: Add r-lsei.
...
* gnu/packages/cran.scm (r-lsei): New variable.
2018-10-30 21:34:55 +01:00
74cc74e434
gnu: Add r-summarytools.
...
* gnu/packages/cran.scm (r-summarytools): New variable.
2018-10-30 21:34:45 +01:00
319a80ce96
gnu: Add r-pander.
...
* gnu/packages/cran.scm (r-pander): New variable.
2018-10-30 21:34:35 +01:00
9b02d1a11e
gnu: Add r-rapportools.
...
* gnu/packages/cran.scm (r-rapportools): New variable.
2018-10-30 21:34:25 +01:00
5df4e27fec
gnu: Add r-rcmdcheck.
...
* gnu/packages/cran.scm (r-rcmdcheck): New variable.
2018-10-30 21:34:15 +01:00
7d8f34707a
gnu: Add r-xopen.
...
* gnu/packages/cran.scm (r-xopen): New variable.
2018-10-30 21:34:05 +01:00
cbc8e6dd4a
gnu: Add r-remotes.
...
* gnu/packages/cran.scm (r-remotes): New variable.
2018-10-30 21:33:56 +01:00
993426244e
gnu: Add r-sessioninfo.
...
* gnu/packages/cran.scm (r-sessioninfo): New variable.
2018-10-30 21:33:47 +01:00
efefd3ec42
gnu: Add r-usethis.
...
* gnu/packages/cran.scm (r-usethis): New variable.
2018-10-30 21:33:37 +01:00
153e5b2ddc
gnu: Add r-clisymbols.
...
* gnu/packages/cran.scm (r-clisymbols): New variable.
2018-10-30 21:33:25 +01:00
d6871153c8
gnu: Add r-fs.
...
* gnu/packages/cran.scm (r-fs): New variable.
2018-10-30 21:33:13 +01:00
21405e81e7
gnu: Add r-gh.
...
* gnu/packages/cran.scm (r-gh): New variable.
2018-10-30 21:33:00 +01:00
03f8011220
gnu: Add r-ini.
...
* gnu/packages/cran.scm (r-ini): New variable.
2018-10-30 21:32:45 +01:00
46cb1c97cb
gnu: rust: Accept more detailed gdb lines for simple enums.
...
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: Modify.
* gnu/packages/rust.scm (rust-1.25)[arguments]<#:phases>[disable-nil-enum-test]:
Delete phase.
2018-10-30 20:20:55 +01:00
a6f2afeee1
gnu: zathura-pdf-mupdf: Simplify arguments.
...
* gnu/packages/pdf.scm (zathura-pdf-mupdf)[arguments]: Remove custom
'patch-plugin-directory phase, replacd with configure-flag.
2018-10-30 11:15:40 +02:00
24fc8f055d
gnu: zathura-pdf-mupdf: Update to 0.3.4.
...
* gnu/packages/pdf.scm (zathura-pdf-mupdf): Update to 0.3.4.
[source]: Remove patch.
* gnu/packages/patches/zathura-pdf-mupdf-link-to-jpeg-libraries.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-30 11:15:39 +02:00
e726f0939e
gnu: mupdf: Update license list.
...
* gnu/packages/pdf.scm (mupdf)[license]: Update the license list.
2018-10-30 11:15:36 +02:00
b1435fe735
gnu: mupdf: Update to 1.14.
...
* gnu/packages/pdf.scm (mupdf): Update to 1.14.
[source]: Don't remove all the bundled libraries.
[arguments]: Add 'configure-flags to use system libraries.
2018-10-30 11:15:09 +02:00
f8ddf719f3
gnu: mujs: Install shared library.
...
* gnu/packages/javascript.scm (mujs)[arguments]: Add custom phase to
install libmujs.so.
2018-10-30 11:03:48 +02:00
1371e2250a
gnu: mujs: Update to 1.0.5.
...
* gnu/packages/javascript.scm (mujs): Update to 1.0.5.
2018-10-30 11:03:06 +02:00
a2717e6986
gnu: calcurse: Use HTTPS URLs.
...
Reported by Marco van Hulten <marco@hulten.org>.
* gnu/packages/calcurse.scm (calcurse)[source, home-page]: Use HTTPS URLs.
2018-10-29 20:45:57 -04:00
b4c93a78c8
gnu: xorg-server: Update to 1.20.3 [fixes CVE-2018-14665].
...
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.3.
2018-10-28 18:22:46 -04:00
81f12f33b7
gnu: linux-libre: Enable BOCHS DRM support.
...
* gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: Build DRM BOCHS support
as a module. It adds DRM support for BOCHS dispi vga interface used by
qemu (-vga std option). It will also be useful for QEMU 3.0 to enable the new
"bochs-display" display device.
* gnu/packages/aux-files/linux-libre/4.19-i686.conf: Ditto.
2018-10-28 20:42:50 +09:00
852a5692bb
gnu: qt@4: Use invoke.
...
* gnu/packages/qt.scm (qt@4)[arguments]: Use invoke.
2018-10-28 09:52:46 +02:00
1f71daf499
gnu: qt@4: Update build config.
...
* gnu/packages/qt.scm (qt@4)[arguments]: Substitute hardcoded '/bin/ls'
invocation. Add configure-flags to not build the examples or demos.
Don't use the precompiled headers.
2018-10-28 09:52:38 +02:00
3ea61f9642
gnu: qt: Use invoke.
...
* gnu/packages/qt.scm (qt)[arguments]: Use invoke.
2018-10-28 09:52:16 +02:00
124351efad
gnu: qt: Add vulkan support.
...
* gnu/packages/qt.scm (qt, qtbase)[native-inputs]: Add vulkan-headers.
(qt@4)[native-inputs]: Don't add vulkan-headers.
(qttools)[native-inputs]: Add vulkan-headers.
2018-10-28 09:51:56 +02:00
d28af1991a
gnu: qt: Use system sqlite.
...
* gnu/packages/databases.scm (sqlite-with-column-metadata): New
variable.
* gnu/packages/qt.scm (qt, qtbase)[source]: Remove bundled sqlite.
[inputs]: Add sqlite-with-column-metadata.
[arguments]: Add configure-flag to use system sqlite.
2018-10-28 09:51:25 +02:00
7930cfc989
gnu: qt: Update to 5.11.2.
...
* gnu/packages/qt.scm (qt, qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel,
qtwebglplugin, qtwebview, qtlocation, qttools, qtscript,
qtquickcontrols, qtquickcontrols2, qtgraphicaleffects, qtgamepad,
qtscxml, qtpurchasing, qtcanvas3d, qtcharts, qtdatavis3d, qtnetworkauth,
qtremoteobjects, qtspeech): Update to 5.11.2.
2018-10-28 09:51:05 +02:00
2b9b4b1fe3
gnu: hashcat-utils: Update to 1.9.
...
And trim lines to 80 characters.
* gnu/packages/password-utils.scm (hashcat-utils): Update to 1.9.
[source]: Parametrise.
2018-10-28 02:34:07 +01:00
2792d8a865
gnu: fzy: Update to 1.0.
...
* gnu/packages/shellutils.scm (fzy): Update to 1.0.
2018-10-28 02:34:07 +01:00
31b619566d
gnu: fzy: Don't use unstable tarball.
...
* gnu/packages/shellutils.scm (fzy)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-10-28 02:34:07 +01:00
6135735b52
gnu: perl-www-mechanize: Update to 1.89.
...
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.89.
2018-10-28 02:34:06 +01:00
fc82538c15
gnu: perl-xml-xpath: Update to 1.44.
...
* gnu/packages/xml.scm (perl-xml-xpath): Update to 1.44.
2018-10-28 02:34:06 +01:00
Ricardo Wurmus