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17746 Commits

Author SHA1 Message Date
Ben Woodcroft a751afb217
gnu: r-mgcv: Update to 1.8-15. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-15.
 2016-10-08 22:29:58 +10:00
Ben Woodcroft d91cb67dd7
gnu: ruby-sequel: Update to 4.39.0. 
* gnu/packages/ruby.scm (ruby-sequel): Update to 4.39.0.
 2016-10-08 22:29:55 +10:00
Ricardo Wurmus 7fd30d1be4
gnu: yoshimi: Update to 1.4.1. 
* gnu/packages/music.scm (yoshimi): Update to 1.4.1.
[arguments]: Add build phase "find-ncurses".
 2016-10-08 14:03:56 +02:00
Ben Woodcroft 9602e3cce9
gnu: python2-dendropy: Fix tests. 
* gnu/packages/bioinformatics.scm (python2-dendropy)[source]: Use unpatched
source.
[arguments]: Use nose to run tests.
[native-inputs]: Add python2-nose.
 2016-10-08 21:38:17 +10:00
Leo Famulari f803f775d2
gnu: vigra: Workaround rounding error in test suite on 32-bit CPUs. 
* gnu/packages/image.scm (vigra)[arguments]: Pass '-ffloat-store' to
C_FLAGS and CXX_FLAGS.
 2016-10-07 22:44:30 -04:00
Ricardo Wurmus 382aacc5a3
gnu: drumstick: Update to 1.1.0. 
* gnu/packages/music.scm (drumstick): Update to 1.1.0.
 2016-10-08 00:15:53 +02:00
Ricardo Wurmus c8ebb4c472
doc: Remove GHC from examples for propagation. 
* doc/guix.texi (package Reference): Remove GHC from the list of
languages for which library run-time dependencies must be propagated.
 2016-10-08 00:03:29 +02:00
Ricardo Wurmus e35ce6893c
gnu: tbb: Update to 2017_20160916. 
* gnu/packages/tbb.scm (tbb): Update to 2017_20160916.
 2016-10-08 00:03:24 +02:00
Ludovic Courtès e052c7e1d5
gnu: gcc@4.8: Use an older Texinfo. 
* gnu/packages/gcc.scm (gcc-4.8)[native-inputs]: New field.
(gcc-4.9): Inherit from GCC-4.7.
 2016-10-07 22:12:16 +02:00
Eric Bavier b8b129ebd8
utils: Support defaults in substitute-keyword-arguments. 
* guix/utils.scm (collect-default-args, expand-default-args): New
syntax.
(substitute-keyword-arguments): Allow default value declarations.
* tests/utils.scm (substitute-keyword-arguments): New test.
 2016-10-07 07:42:05 -05:00
Eric Bavier 347df60158
utils: Fix default-keyword-arguments. 
* guix/utils.scm (default-keyword-arguments): Properly test for present
keywords.
* tests/utils.scm (default-keyword-arguments): New test.
 2016-10-07 07:41:57 -05:00
Efraim Flashner fb29e737d4
gnu: ncdu: Update to 1.12. 
* gnu/packages/ncdu.scm (ncdu): Update to 1.12.
[source]: Use https.
[license]: Use https.
[home-page]: Use https.
 2016-10-07 14:26:12 +03:00
Efraim Flashner 2ff746dcd2
gnu: isl: Add support for aarch64. 
* gnu/packages/gcc.scm (isl)[source]: Add patch.
* gnu/packages/patches/isl-0.11.1-aarch64-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-10-07 12:26:44 +03:00
Efraim Flashner 21e5e1e070
gnu: cmake: Build 'ccmake' binary. 
* gnu/packages/cmake.scm (cmake)[inputs]: Add ncurses.
 2016-10-07 12:26:36 +03:00
Ricardo Wurmus b314360f30
gnu: abbaye: Update source URL. 
* gnu/packages/games.scm (abbaye)[source]: Update tarball URL.
 2016-10-07 09:22:44 +02:00
Leo Famulari ae336f8b84
gnu: khal: Update to 0.8.4. 
* gnu/packages/calendar.scm (khal): Update to 0.8.4.
 2016-10-07 01:48:45 -04:00
John Darrington c8f354588e
gnu: tzdata: Use modify-phases 
* gnu/packages/base.scm (tzdata)[arguments]: Replace alist- procedures
with modify-phases
 2016-10-07 06:59:49 +02:00
John Darrington 12b85b3787
gnu: tzdata: Fix dangling symbolic link. 
* gnu/packages/base.scm (tzdata)[arguments]: Replace dangling symbolic link
with the correct path.
 2016-10-07 06:59:42 +02:00
Leo Famulari 1d8de185b8
gnu: openssl: Update to 1.0.2j. 
* gnu/packages/tls.scm (openssl): Update to 1.0.2j.
[replacement]: Remove field
[source]: Remove 'openssl-CVE-2016-2177.patch' and
'openssl-CVE-2016-2178.patch'.
(openssl-1.0.2j): Remove variable.
(openssl-next)[replacement]: Remove field.
* gnu/packages/patches/openssl-CVE-2016-2177.patch,
gnu/packages/patches/openssl-CVE-2016-2178.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-10-06 17:50:17 -04:00
Leo Famulari 17b56c06e9
gnu: tzdata: Update to 2016g. 
* gnu/packages/base.scm (tzdata): Update to 2016g.
 2016-10-06 17:45:27 -04:00
Leo Famulari 7ca97fae36
gnu: lvm2: Make sure compiled objects are stripped. 
* gnu/packages/linux.scm (lvm2)[arguments]: Add 'make-objects-writeable' phase.
 2016-10-06 17:43:44 -04:00
Leo Famulari 123c0ffb87
gnu: lvm2: Update to 2.02.166. 
* gnu/packages/linux.scm (lvm2): Update to 2.02.166.
 2016-10-06 17:43:44 -04:00
Leo Famulari 3afbc6b3c3
gnu: lvm2: Use 'modify-phases'. 
* gnu/packages/linux.scm (lvm2)[arguments]: Use 'modify-phases'.
 2016-10-06 17:43:39 -04:00
Ludovic Courtès af0ba93825
guix system: Return two values when failing to talk to shepherd. 
Before that, when 'guix system reconfigure' failed to talk to shepherd
and a 'system-error' was raised, we would get a "too few values returned
to continuation" error, which would prevent GRUB from being installed.

Reported by fps on #guix.

* guix/scripts/system.scm (warn-on-system-error): Remove.
(with-shepherd-error-handling): Inline former 'warn-on-system-error'.
Return two values when 'system-error' is raised.
 2016-10-06 22:59:47 +02:00
Efraim Flashner 59fed2b609
gnu: nginx: Update to 1.11.4. 
* gnu/packages/web.scm (nginx): Update to 1.11.4.
[source] Use https.
[home-page]: Use https.
 2016-10-06 22:01:00 +03:00
Thomas Danckaert 0f43f8354c
gnu: Add hdf-eos5. 
* gnu/packages/maths.scm (hdf-eos5): New variable.
* gnu/packages/patches/hdf-eos5-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos5-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos5-fix-szip.patch: New file.
* gnu/packages/patches/hdf-eos5-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-06 18:14:45 +02:00
Ludovic Courtès b282c78192
nls: Update 'de' translation. 2016-10-06 18:14:45 +02:00
8p8c b94ee996ce
gnu: font-hack: Remove empty doc directory. 
* gnu/packages/fonts.scm (font-hack)[arguments]: Remove superfluous code
in #:builder.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-10-06 20:59:05 +08:00
8p8c 3126fd8820
services: xorg: Add ATI video driver to the default modules. 
* gnu/services/xorg.scm (%default-xorg-modules): Add xf86-video-ati.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-10-06 20:46:50 +08:00
Andy Patterson fb7dc6d647
gnu: ecl: Honour XDG_DATA_DIRS/ecl-bundle-systems. 
* gnu/packages/lisp.scm (ecl)[source]: Add snippet.
[native-search-paths]: Add XDG_DATA_DIRS.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-10-06 20:33:55 +08:00
Andy Patterson 8d0489aeb6
gnu: sbcl: Honour XDG_DATA_DIRS/sbcl-bundle-systems. 
* gnu/packages/lisp.scm (asdf-substitutions): New variable.
(sbcl)[source]: Add snippet.
[native-search-paths]: Add XDG_DATA_DIRS.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-10-06 20:33:55 +08:00
Ricardo Wurmus eb0ff8a382
gnu: Add ghc-pandoc-citeproc. 
* gnu/packages/haskell.scm (ghc-pandoc-citeproc): New variable.
 2016-10-06 14:18:25 +02:00
Ricardo Wurmus bfdfb0f63f
gnu: Add ghc-xml-conduit. 
* gnu/packages/haskell.scm (ghc-xml-conduit): New variable.
 2016-10-06 14:18:25 +02:00
Ricardo Wurmus e9ef2c51d5
gnu: Add ghc-xml-types. 
* gnu/packages/haskell.scm (ghc-xml-types): New variable.
 2016-10-06 14:18:25 +02:00
Ricardo Wurmus 1aa45bbf6f
gnu: Add ghc-conduit-extra. 
* gnu/packages/haskell.scm (ghc-conduit-extra): New variable.
 2016-10-06 14:18:25 +02:00
Ricardo Wurmus 9ce764b689
gnu: Add ghc-rfc5051. 
* gnu/packages/haskell.scm (ghc-rfc5051): New variable.
 2016-10-06 14:18:24 +02:00
Ricardo Wurmus 37e02bf65b
gnu: Add ghc-hs-bibutils. 
* gnu/packages/haskell.scm (ghc-hs-bibutils): New variable.
 2016-10-06 14:18:24 +02:00
Ricardo Wurmus b376463552
gnu: ghc-streaming-commons: Remove standard packages from inputs. 
The "directory" and "transformers" modules are part of GHC and should
not be among the inputs to avoid conflicts.

* gnu/packages/haskell.scm (ghc-streaming-commons)[inputs]: Remove
"ghc-directory" and "ghc-transformers".
 2016-10-06 14:18:21 +02:00
Ricardo Wurmus fc47c7d635
gnu: Add r-bsgenome-celegans-ucsc-ce10. 
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): New
variable.
 2016-10-06 10:33:43 +02:00
Leo Famulari 6a4cbc6f12
gnu: nss-certs and nss: Update to 3.27.1. 
* gnu/packages/certs.scm (nss-certs): Update to 3.27.1.
* gnu/packages/gnuzilla.scm (nss): Update to 3.27.1.
 2016-10-05 20:04:50 -04:00
Leo Famulari 22f08f0605
gnu: libxvmc: Update to 1.0.10. 
* gnu/packages/xorg.scm (libxvmc): Update to 1.0.10.
[replacement]: Remove field.
(libxvmc/fixed): Remove variable.
* gnu/packages/patches/libxvmc-CVE-2016-7953.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-05 19:36:26 -04:00
Leo Famulari 62ad505603
gnu: libxv: Update to 1.0.11. 
* gnu/packages/xorg.scm (libxv): Update to 1.0.11.
[replacement]: Remove field.
(libxv/fixed): Remove variable.
* gnu/packages/patches/libxv-CVE-2016-5407.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-05 19:36:25 -04:00
Leo Famulari 82e6a4341b
gnu: libxtst: Update to 1.2.3. 
* gnu/packages/xorg.scm (libxtst): Update to 1.2.3.
[replacement]: Remove field.
(libxtst/fixed): Remove variable.
* gnu/packages/patches/libxtst-CVE-2016-7951-CVE-2016-7952.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-05 19:36:25 -04:00
Leo Famulari 9eb76bd3e5
gnu: libxrender: Update to 0.9.10. 
* gnu/packages/xorg.scm (libxrender): Update to 0.9.10.
[replacement]: Remove field.
(libxrender/fixed): Remove variable.
* gnu/packages/patches/libxrender-CVE-2016-7949.patch,
gnu/packages/patches/libxrender-CVE-2016-7950.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-10-05 19:36:25 -04:00
Leo Famulari 2e81b0b5bf
gnu: libxrandr: Update to 1.5.1. 
* gnu/packages/xorg.scm (libxrandr): Update to 1.5.1.
[replacement]: Remove field.
(libxrandr/fixed): Remove variable.
* gnu/packages/patches/libxrandr-CVE-2016-7947-CVE-2016-7948.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-05 19:36:24 -04:00
Leo Famulari 571fa535cd
gnu: libxi: Update to 1.7.7. 
* gnu/packages/xorg.scm (libxi): Update to 1.7.7.
[replacement]: Remove field.
(libxi/fixed): Remove variable.
* gnu/packages/patches/libxi-CVE-2016-7945-CVE-2016-7946.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-05 19:36:24 -04:00
Leo Famulari 3e1ed70f74
gnu: libxfixes: Update to 5.0.3. 
* gnu/packages/xorg.scm (libxfixes): Update to 5.0.3.
[replacement]: Remove field.
(libxfixes/fixed): Remove variable.
* gnu/packages/patches/libxfixes-CVE-2016-7944.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-05 19:36:24 -04:00
Leo Famulari 4dd841c1dc
gnu: libx11: Update to 1.6.4. 
* gnu/packages/xorg.scm (libx11): Update to 1.6.4.
[replacement]: Remove field.
(libx11/fixed): Remove variable.
* gnu/packages/patches/libx11-CVE-2016-7942.patch,
gnu/packages/patches/libx11-CVE-2016-7943.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-10-05 19:36:24 -04:00
Leo Famulari b19c7989b7
Merge branch 'master' into core-updates 2016-10-05 19:15:25 -04:00
Leo Famulari 1459476089
gnu: e2fsprogs: Fix typo in comment. 
* gnu/packages/linux.scm (e2fsprogs)[arguments]: Fix typo in comment.
 2016-10-05 18:59:29 -04:00