9b4ea95bbe
gnu: emacs-evil-owl: Update to 0.0.1-3.24e5f43.
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* gnu/packages/emacs-xyz.scm (emacs-evil-owl): Update to 0.0.1-3.24e5f43.
[source]: Enable tests.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-09-06 12:25:19 +03:00
473d636072
gnu: emacs-evil-multiedit: Enable tests.
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* gnu/packages/emacs-xyz.scm (emacs-evil-multiedit): Enable tests.
[inputs]: Add emacs-ert-runner.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-09-06 12:24:59 +03:00
248965c91c
gnu: Add guile-cv.
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* gnu/packages/guile-xyz.scm (guile-cv): New variable.
2019-09-05 22:45:48 +02:00
813ed0bd3d
gnu: texlive-union: Fix font map generation.
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* gnu/packages/tex.scm (texlive-union)[arguments]: Exclude sed and coreutils
from union; add sed to the PATH; run updmap-sys twice; delete ls-R to avoid
lookup failures.
2019-09-05 22:45:48 +02:00
09e2f25842
gnu: texlive-latex-base: Ensure that extra sources are installed.
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* gnu/packages/tex.scm (texlive-latex-base): Use simple-texlive-package to
install additional files.
2019-09-05 22:45:48 +02:00
66d2133500
gnu: Add texlive-booktabs.
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* gnu/packages/tex.scm (texlive-booktabs): New variable.
2019-09-05 22:45:42 +02:00
69f0c8cf55
gnu: Add texlive-siunitx.
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* gnu/packages/tex.scm (texlive-siunitx): New variable.
2019-09-05 22:45:42 +02:00
11ecf9f48f
gnu: Add texlive-standalone.
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* gnu/packages/tex.scm (texlive-standalone): New variable.
2019-09-05 22:45:42 +02:00
f16e09487b
gnu: texlive-latex-xkeyval: Fix build.
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* gnu/packages/tex.scm (texlive-latex-xkeyval)[arguments]: Add various custom
build phases to fix the build.
[native-inputs]: Add texlive-latex-base, texlive-cm, texlive-lm, texlive-url,
texlive-graphics-def, texlive-xcolor, texlive-latex-footmisc,
texlive-latex-listings, texlive-iftex, texlive-pstricks, texlive-pst-text,
texlive-tools, and texlive-latex-pgf.
2019-09-05 22:45:41 +02:00
99b143655b
gnu: Add texlive-tools.
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* gnu/packages/tex.scm (texlive-tools): New variable.
2019-09-05 22:45:41 +02:00
51bf1c5188
gnu: Add texlive-iftex.
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* gnu/packages/tex.scm (texlive-iftex): New variable.
2019-09-05 22:45:41 +02:00
a72d343aea
gnu: Add texlive-pst-text.
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* gnu/packages/tex.scm (texlive-pst-text): New variable.
2019-09-05 22:45:41 +02:00
e5c081291e
gnu: Add texlive-pstricks.
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* gnu/packages/tex.scm (texlive-pstricks): New variable.
2019-09-05 22:45:41 +02:00
73ce44218b
gnu: Add texlive-ydoc.
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* gnu/packages/tex.scm (texlive-ydoc): New variable.
2019-09-05 22:45:41 +02:00
266e07421e
gnu: Add texlive-xcolor.
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* gnu/packages/tex.scm (texlive-latex-xcolor): Bind to deprecated package
pointing...
(texlive-color): ...to this variable; implement in terms of
simple-texlive-package.
[arguments]: Add phase "move-files" to install xcolor.pro to the expected
location.
2019-09-05 22:45:41 +02:00
f1a46c9025
gnu: texlive-fonts-iwona: Use double spacing in description.
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* gnu/packages/tex.scm (texlive-fonts-iwona)[description]: Use double spacing.
2019-09-05 22:45:41 +02:00
4526bd07f7
gnu: vigra-c: Update to 0.0.0-1.66ff4fa.
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* gnu/packages/image.scm (vigra-c): Update to 0.0.0-1.66ff4fa.
[inputs]: Add hdf5.
2019-09-05 22:45:41 +02:00
f480133c4e
gnu: libbigwig: Update to 0.4.4.
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* gnu/packages/bioinformatics.scm (libbigwig): Update to 0.4.4.
2019-09-05 22:45:41 +02:00
067ea2989f
gnu: python-pyfaidx: Remove python-setuptools as an input.
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As this is provided by the build system, and I'm assuming that it's not
necessary to have it as a propagated input.
* gnu/packages/bioinformatics.scm (python-pyfaidx)[propagated-inputs]: Remove
python-setuptools.
2019-09-05 18:35:47 +02:00
5f9fe21d49
gnu: umi-tools: Remove python-setuptools as an input.
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As this is provided by the build system.
* gnu/packages/bioinformatics.scm (umi-tools)[inputs,native-inputs]: Remove
python-setuptools.
2019-09-05 18:35:42 +02:00
e1e3fe0848
guix-install.sh: Work around locale issues in 'guix-daemon.service'.
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* etc/guix-install.sh (sys_enable_guix_daemon): Modify
'guix-daemon.service' to work around locale issues not fixed in 1.0.1.
2019-09-05 18:33:30 +02:00
67c2db17bc
download: Pass 'http_proxy' et al. to git, hg, etc.
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This allows 'git-fetch' etc. origins to honor the proxy and locale of
the daemon.
* guix/bzr-download.scm (bzr-fetch): Pass #:leaked-env-vars to
'gexp->derivation'.
* guix/cvs-download.scm (cvs-fetch): Likewise.
* guix/git-download.scm (git-fetch): Likewise.
* guix/hg-download.scm (hg-fetch): Likewise.
* guix/svn-download.scm (svn-multi-fetch): Likewise.
2019-09-05 18:33:30 +02:00
d550845840
gnu: Syncthing: Update to 1.2.2.
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* gnu/packages/syncthing.scm (syncthing): Update to 1.2.2.
[inputs]: Remove go-github-com-calmh-du and add go-github-com-shirou-gopsutil.
2019-09-05 11:09:36 -04:00
9a2f23341d
gnu: Add go-github-com-shirou-gopsutil.
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* gnu/packages/syncthing.scm (go-github-com-shirou-gopsutil): New variable.
2019-09-05 11:09:36 -04:00
a8ad05d40c
gnu: go-github-com-urfave-cli: Update to 1.21.0.
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* gnu/packages/golang.scm (go-github-com-urfave-cli): Update to 1.21.0.
2019-09-05 11:09:32 -04:00
31885f444f
gnu: emacs-org-contrib: Update to 20190904.
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* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 20190904.
2019-09-05 16:02:27 +02:00
be285c3dc0
gnu: emacs-org: Update to 9.2.6.
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* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.2.6.
2019-09-05 15:57:02 +02:00
51072ed8ac
gnu: emacs-org-caldav: Update to 0.0.0-1.
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* gnu/packages/emacs-xyz.scm (emacs-org-caldav): Update to latest commit,
since there is no release yet.
[description]: Remove alpha status, no longer specified in README.
2019-09-05 15:55:50 +02:00
0575fe681c
Revert "gnu: next: Compress the executable."
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Some essential references (e.g. libfixposix) are lost in the process.
This reverts commit 0e8b91dbc4
2019-09-05 14:52:48 +02:00
6b4ed9ad97
gnu: gama: Update to 2.07.
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* gnu/packages/gps.scm (gama): Update to 2.07.
2019-09-05 14:46:42 +03:00
79c6d8781b
gnu: bwa-meth: Capture one more reference to "bwa".
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Reported by: Alexander.Blume <Alexander.Blume@mdc-berlin.de>
* gnu/packages/bioinformatics.scm (bwa-meth)[arguments]: Capture invocation of
"bwa index" to retain reference to "bwa" package.
2019-09-05 12:06:43 +02:00
0e8b91dbc4
gnu: next: Compress the executable.
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* gnu/packages/web-browsers.scm (next)[arguments]: Compressing the executable
brings it from about 95 MiB to 22 MiB.
2019-09-05 11:55:58 +02:00
33a42f67ce
gnu: emacs-evil-collection: Update to 0.0.2.
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* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 0.0.2.
2019-09-05 11:55:58 +02:00
6b5f59c7a6
gnu: Add r-bigmelon.
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* gnu/packages/bioconductor.scm (r-bigmelon): New variable.
2019-09-05 11:46:29 +02:00
7d2cb646f7
gnu: Add r-gdsfmt.
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* gnu/packages/bioconductor.scm (r-gdsfmt): New variable.
2019-09-05 11:46:29 +02:00
38babeaaa4
gnu: Add r-watermelon.
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* gnu/packages/bioconductor.scm (r-watermelon): New variable.
2019-09-05 11:46:29 +02:00
46721deaf8
gnu: Add r-illuminahumanmethylation450kanno-ilmn12-hg19.
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* gnu/packages/bioconductor.scm
(r-illuminahumanmethylation450kanno-ilmn12-hg19): New variable.
2019-09-05 11:46:29 +02:00
db316d7376
gnu: Add r-roc.
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* gnu/packages/bioconductor.scm (r-roc): New variable.
2019-09-05 11:46:29 +02:00
7d57bc4d0d
gnu: efl: Update to 1.22.4.
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* gnu/packages/enlightenment.scm (efl): Update to 1.22.4.
2019-09-05 12:42:50 +03:00
a3439b0c70
gnu: sbcl: Use CLISP instead of unboostrappable CCL to build.
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* gnu/packages/lisp.scm (sbcl)[arguments]: Build with CLISP.
2019-09-05 11:41:35 +02:00
9e737b31cb
gnu: sbcl: Update to 1.5.6.
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* gnu/packages/lisp.scm (sbcl): Update to 1.5.6.
2019-09-05 10:25:02 +02:00
01e38cc426
build-system/asdf: Add option to compress programs.
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* guix/build/lisp-utils.scm (build-program): Add `compress?' key argument.
(generate-executable-for-system): Same.
(generate-executable): Same.
2019-09-05 09:56:21 +02:00
2b332c51db
gnu: dolphin-emu: Update to commit a974540.
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* gnu/packages/emulators.scm (dolphin-emu): Update to commit a974540.
[source]: Delete unneeded MoltenVK map.
[arguments]: Properly hardcode libvulkan path.
2019-09-05 08:22:34 +02:00
b8e7e20841
gnu: docker: Add support for tini.
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* gnu/packages/docker.scm (docker)[inputs]: Add tini.
[phases]{patch-paths}: Patch the path of the default init binary.
2019-09-05 09:38:23 +09:00
92086eeda3
gnu: Add tini.
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* gnu/packages/docker.scm (tini): New variable.
2019-09-05 09:38:22 +09:00
9bf589867b
gnu: nginx: Update to 1.17.3 [security fixes].
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This release fixes CVE-2019-9511, CVE-2019-9513, and CVE-2019-9516.
* gnu/packages/web.scm (nginx): Update to 1.17.3.
2019-09-05 00:21:43 +02:00
fbcbafdcaa
gnu: miniupnpc: Update to 2.1.20190824.
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* gnu/packages/upnp.scm (miniupnpc): Update to 2.1.20190824.
2019-09-05 00:21:43 +02:00
56ac8ca3c8
gnu: varnish: Update to 6.2.1.
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* gnu/packages/web.scm (varnish): Update to 6.2.1.
2019-09-05 00:21:43 +02:00
276e7739b9
gnu: libnl: Update to 3.5.0.
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* gnu/packages/linux.scm (libnl): Update to 3.5.0.
2019-09-05 00:21:43 +02:00
309721b324
gnu: samba: Update to 4.10.8 [fixes CVE-2019-10197].
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* gnu/packages/samba.scm (samba): Update to 4.10.8.
2019-09-05 00:21:42 +02:00
Brian Leung