* gnu/packages/bioinformatics.scm (python-pysam)[arguments] <check>:
Use (negate proc) instead of (compose not proc).
* guix/import/cran.scm (recursive-import): Likewise.
* guix/import/elpa.scm (filter-dependencies): Use 'remove' instead of
'(filter (compose not proc) ...)'.
Fixes a regression introduced in
a4f5423415.
Reported by Hartmut Goebel.
* guix/build/download.scm (ftp-fetch): Account for the case where
'uri-userinfo' returns #f. Remove the case where it returns "" since
that cannot happen.
This avoids connections to substitute servers for derivations that are
not substitutable anyway, such as profiles.
Reported by Andy Wingo.
* guix/derivations.scm (substitution-oracle): Skip derivations that do
not pass 'substitutable-derivation?'.
* tests/derivations.scm ("substitution-oracle and #:substitute? #f"):
New test.
* guix/ui.scm (package-field-string): New procedure.
(package-description-string): Use it.
(package-synopsis-string): New procedure.
(package->recutils): Use it.
* guix/scripts/lint.scm (check-synopsis-style)[check-texinfo-markup]:
New procedure. Use it in checks.
* tests/lint.scm: Test it.
* gnu/packages/perl.scm (perl-try-tiny)[synopsis]: Adjust for the
Texinfo markup.
* guix/build/download.scm (open-connection-for-uri): Add note about
same-named binding in Guile 2.2.0.
* guix/http-client.scm: Use 'guix:open-connection-for-uri' for the
procedure coming from (guix build download).
* guix/scripts/lint.scm: Likewise.
* guix/scripts/substitute.scm: Likewise.
* guix/scripts/pack.scm (self-contained-tarball): Add #:target.
(docker-image): Add #:target.
[build]: Pass it to 'build-docker-image'.
(%options, show-help): Add '--target'.
(guix-pack): Pass TARGET to 'profile-derivation' and to 'build-image'.
* guix/docker.scm (build-docker-image): Add #:system parameter and honor it.
* doc/guix.texi (Invoking guix pack): Document '--target'.
(Additional Build Options): Refer to the Autoconf manual instead of the
obsolete 'configure.info' for cross-compilation.
* guix/scripts/pack.scm (<compressor>)[package]: Remove.
[command]: Document as being a gexp with an absolute file name.
(%compressors): Adjust accordingly.
(self-contained-tarball): Simplify PATH expression. Move 'string-join'
for the compressor command on the build side.
(docker-image): Simplify PATH expression.
* tests/pack.scm (%gzip-compressor): Adjust accordingly.
* guix/build/cargo-build-system.scm (configure): Remove proprietary
dependencies. Add rust dependencies and configure Cargo to find them.
(build): Also build libraries, not just applications.
(file-sha256): New variable.
(generate-checksums): New variable. Export it.
(touch): New variable.
(install): Generate checksums so Cargo accepts the package.
* guix/gexp.scm (imported-files)[file-pair]: Add case for pairs where
the cdr is not a string.
(imported-modules): Support '=>' syntax in MODULES.
* tests/gexp.scm ("imported-files with file-like objects")
("gexp->derivation & with-imported-module & computed module"): New tests.
* doc/guix.texi (G-Expressions): Document '=>' syntax for
'with-imported-modules'.
Before that, something like:
(call-with-container
(lambda ()
(match (primitive-fork)
…)))
would hang in 'primitive-fork' as the child process (the one started in
the container) would try to pthread_join the finalization thread in
'stop_finalization_thread' in libguile, not knowing that this thread is
nonexistent.
* guix/build/syscalls.scm (%set-automatic-finalization-enabled?!): New
procedure.
(without-automatic-finalization): New macro.
(clone): Wrap PROC call in 'without-automatic-finalization'.
In 2.2, 'fport_close' no longer swallows EBADF and instead raises a
'system-error' for this. This commit adjusts for 2.2.
* guix/zlib.scm (close-procedure): Remove.
(make-gzip-input-port): Use 'port->fdes' instead of 'fileno'.
Use 'gzclose' instead of 'close-procedure'.
(make-gzip-output-port): Likewise.
* tests/zlib.scm ("compression/decompression pipe"): Don't check whether
PARENT is closed using 'port-closed?'. Instead, use 'seek' on the
underlying FD and check for EBADF.
* guix/scripts/pack.scm (self-contained-tarball): Add #:tar option.
[build](tar-supports-sort?): New variable. Use it.
* tests/pack.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
* guix/scripts/pack.scm (<compressor>)[tar-option]: Remove.
[command]: New field.
(%compressors): Provide complete commands. Use '-9' or equivalent for
each compressor; use '-n' for gzip.
(self-contained-tarball)[build]: Adjust accordingly.
* guix/scripts/pack.scm (self-contained-tarball): Add #:localstatedir?
parameter and honor it.
(%options, show-help): Add '--localstatedir'.
(guix-pack): Honor it.
* gnu/build/install.scm (populate-single-profile-directory): Add
#:register? parameter and honor it.
* doc/guix.texi (Binary Installation): Use '--localstatedir' in
example.
(Invoking guix pack): Document it.
* guix/build/syscalls.scm (define-bits): Do not define NAMES... as
top-level variables since that prevents literal matches in 2.2.
Instead, determine constant values at expansion time.
Fixes a regression introduced in 7447aa36e1.
Reported by Ricardo Wurmus.
* guix/utils.scm: Revert 7447aa36e1. Use
#:prefix for (ice-9 iconv) to support both 2.0 and 2.2.
In Guile 2.2, (rnrs io ports) exports 'bytevector->string', which
conflicts with that of (ice-9 iconv).
* guix/utils.scm: Hide 'bytevector->string' from (rnrs io ports).
* guix/ui.scm (right-arrow): Call 'set-port-encoding!' to set PORT's
encoding; remove use of 'with-fluids'. This is for compatibility with
Guile 2.2 where the encoding of string ports is not influenced by
%DEFAULT-PORT-ENCODING.
* tests/ui.scm ("show-manifest-transaction"): Likewise.
* guix/ui.scm (fill-paragraph): Don't use '_' as a pattern variable
since that is shadowed by the top-level '_' binding on Guile 2.2.
(show-manifest-transaction): Likewise.
Fixes <http://bugs.gnu.org/25775>.
Reported by Sirgazil, Ricardo Wurmus, Andy Wingo, and others.
* guix/download.scm (in-band-download): Always use GUILE. This reverts
9f05908fb1.
* gnu/packages/bash.scm (url-fetch/reset-patch-level): Remove #:guile.
Pass %BOOTSTRAP-GUILE as #:guile to 'url-fetch'. Remove #:guile-for-build
argument in 'gexp->derivation' call.
In glibc-2.25 a dependency on "linux/falloc.h" was added.
This also reverts commit 8f8f250bdc
which is no longer needed. This commit was not compatible with
the glibc version Hurd is using. See
<https://lists.gnu.org/archive/html/guix-devel/2017-02/msg01046.html>
* guix/build/make-bootstrap.scm (make-stripped-libc): Copy "falloc.h"
to the new system.
* gnu/packages/patches/glibc-bootstrap-system.patch: Remove part
that touches fcntl-linux.h.
Problem reported by Andreas Enge <andreas@enge.fr>.
Fixes <http://bugs.gnu.org/25775>.
* guix/download.scm (in-band-download): Use %bootstrap-guile as a
fall-back when using older daemons that do not have a built-in
downloader.
Written-by: Ricardo Wurmus <rekado@elephly.net>
It doesn't make sense to run non-test executables (which is what "dub run"
would do).
The "check" function already invokes "dub test" and that's enough.
* guix/build/dub-build-system.scm (build): Remove "dub run" invocation.
Fixes <https://bugs.gnu.org/25635>.
Reported by Sergei Trofimovich <slyfox@inbox.ru>.
* guix/import/pypi.scm (guix-package->pypi-name)[url->pypi-name]: New
procedure.
Rewrite body to match lists in addition to strings.
* tests/pypi.scm ("guix-package->pypi-name, several URLs"): New test.
Gtk+3 now have multiple outputs, so the gtk-query-immodules-3.0 should be find
in output "bin" instead of "out".
* guix/profiles.scm (gtk-im-modules): Pass the path of gtk-query-immodules-x.x
as 'query' argument to the 'build' procedure.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
* guix/download.scm (url-fetch/tarbomb): Fall back to ‘file-name’ if
‘name’ is #f, like the regular ‘url-fetch’ does.
* gnu/packages/bioinformatics.scm (muscle)[source]: Remove ‘file-name’.
* gnu/packages/engineering.scm (fastcap)[source]: Likewise.
* gnu/packages/scheme.scm (scmutils)[source]: Likewise.
* guix/scripts/environment.scm (launch-environment/container): Include the
file name in the call to string=? when deciding if the file should be
writable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* guix/serialization.scm (write-bytevector): New procedure.
(write-string): Rewrite in terms of 'write-bytevector'.
* guix/store.scm (write-arg): Add 'bytevector' case.
(add-data-to-store): New procedure, from former 'add-text-to-store'.
(add-text-to-store): Rewrite in terms of 'add-data-to-store'.
* tests/store.scm ("add-data-to-store"): New test.
* guix/build-system/python.scm (package-with-explicit-python): Use
'mlambdaq' instead of 'mlambda'. This does not change the <package>
graph and has no visible impact on performance.
* guix/packages.scm (package-upstream-name): New procedure.
* guix/gnu-maintenance.scm (gnu-package?, ftp-server/directory)
(latest-release*, latest-gnome-release)
(latest-kde-release): Use it instead of the inline expression.
* gnu/build/activation.scm (make-file-writable): Move this to ...
* guix/build/utils.scm (make-file-writable): ... here. Export it.
* guix/build/gnu-build-system.scm (strip): Use it.
This avoids a situation where the "debug" output would contain separate
(and different) .debug files for "libfoo.so" and "libfoo.so.0.0", even
though "libfoo.so" is actually a symlink to "libfoo.so.0.0".
* guix/build/gnu-build-system.scm (strip): Remove 'file-exists?' call in
'for-each' lambda. Pass a predicate to 'find-files' to restrict the
result to regular files.
* guix/scripts/copy.scm (open-ssh-session): Replace userauth-agent! by
userauth-public-key/auto!. This way, if ssh-agent is not run,
default ssh key (~/.ssh/id_rsa) will be used as a fallback.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* guix/scripts/container/exec.scm (guix-container-exec): Capture the value of
the TERM environment variable, and pass it through to the container. This
means some applications now work where they did not before (e.g. htop), and
others have more functionality, providing that the terminal was capable of
enabling that functionality in the first place.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Fixes <http://bugs.gnu.org/24886>.
Previously, the grafting derivation of, say, brdf-explorer would pull in
qt:doc even though brdf-explorer depends only on qt:out, not qt:doc.
* guix/grafts.scm (with-cache): Use 'vhash-assoc' and 'vhash-cons'
instead of 'vhash-assq' and 'vhash-consq'.
(cumulative-grafts): Pass #:outputs to 'graft-derivation/shallow'. Use
OUTPUTS instead of (derivation-output-names drv).
(graft-derivation): Add #:outputs parameter; pass it to
'cumulative-grafts'.
* tests/grafts.scm (make-derivation-input): New variable.
("graft-derivation, replaced derivation has multiple outputs"): Make
sure P2:zzz is not part of the outputs of P3D.
("graft-derivation with #:outputs")
("graft-derivation, unused outputs not depended on"): New tests.
This adds support for single-entry search paths.
Fixes <http://bugs.gnu.org/25422>.
Reported by Leo Famulari <leo@famulari.name>.
* guix/search-paths.scm (<search-path-specification>)[separator]:
Document as string or #f.
(evaluate-search-paths): Add case for SEPARATOR as #f.
(environment-variable-definition): Handle SEPARATOR being #f.
* guix/build/utils.scm (list->search-path-as-string): Add case for
SEPARATOR as #f.
(search-path-as-string->list): Likewise.
* guix/build/profiles.scm (abstract-profile): Likewise.
* tests/search-paths.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
* tests/packages.scm ("--search-paths with single-item search path"):
New test.
* gnu/packages/version-control.scm (git)[native-search-paths](separator):
New field.
* guix/build/syscalls.scm (<utmpx-entry>): New record type.
(%utmpx): New C struct.
(login-type): New bits.
(setutxent, endutxent, getutxent, utmpx-entries): New procedures.
* guix/import/github.scm (json-fetch*): Catch 403 HTTP error that may be
raised if a github token has not been set.
Signed-off-by: Mathieu OTHACEHE <m.othacehe@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Reported by Chris Webber.
* guix/scripts/build.scm (register-root): If ROOT is absolute, keep it
as is.
* guix/scripts/environment.scm (register-gc-root): Likewise.
* tests/guix-environment.sh (expected): Add test.
Before this commit, we'd lose the cache across recursive calls to
'cumulative-grafts', which isn't great performance-wise.
This bug was already present before
d38bc9a9f6.
* guix/grafts.scm (with-cache): In the miss case, call 'current-state'
after EXP has been evaluated.
This fixes a regression introduced in
d38bc9a9f6 whereby the cache was
effectively disabled.
Reported by Thomas Danckaert <thomas.danckaert@gmail.com>.
* guix/grafts.scm (with-cache): In the cache miss case, wrap body in
'mbegin'.
* guix/profiles.scm: Export ca-certificate-bundle, such that it can be used in
other G-expressions. This is useful where these G-expressions run programs
that require a ca-certificate-bundle, e.g. git.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This lets the daemon use its own default settings unless otherwise
specified.
* guix/scripts/build.scm (set-build-options-from-command-line): Do not
provide default values for #:build-cores and #:max-build-jobs.
(%default-options): Remove 'max-silent-time'.
Fixes <http://bugs.gnu.org/20217>.
* nix/libstore/worker-protocol.hh (PROTOCOL_VERSION): Bump to 0x161.
* nix/nix-daemon/nix-daemon.cc (performOp): "build-max-jobs",
"build-max-silent-time", and "build-cores" are no longer read upfront;
instead, read them from the key/value list at the end.
* nix/nix-daemon/guix-daemon.cc (main): Explicitly set
'settings.maxBuildJobs'.
* guix/store.scm (%protocol-version): Bump to #x161.
(set-build-options): #:max-build-jobs, #:max-silent-time, and
#:build-cores now default to #f. Adjust handshake to new protocol.
* tests/store.scm ("build-cores"): New test.
* tests/guix-daemon.sh: Add test for default "build-cores" value.
* guix/scripts/challenge.scm (summarize-report): Add #:verbose?
parameter.
[report-hashes]: New procedure. Use it.
Honor VERBOSE? in the 'match case.
(show-help, %options): Add '--verbose'.
(guix-challenge): Honor it.
This makes it easier to distinguish between matches, mismatches, and the
various cases of inconclusive reports.
* guix/scripts/challenge.scm (<discrepancy>): Rename to...
(<comparison-report>): ... this. Add 'result' field.
(comparison-report): New macro.
(comparison-report-predicate, comparison-report-mismatch?)
(comparison-report-match?)
(comparison-report-inconclusive?): New procedures.
(discrepancies): Rename to...
(compare-contents): ... this. Change to return a list of
<comparison-report>. Remove calls to 'warning'.
(summarize-discrepancy): Rename to...
(summarize-report): ... this. Adjust to <comparison-report>.
(guix-challenge): Likewise.
* tests/challenge.scm ("no discrepancies")
("one discrepancy"): Adjust to new API.
("inconclusive: no substitutes")
("inconclusive: no local build"): New tests.
Fixes a regression introduced in
62bd24db39, which introduced a call to
'hash-table->alist'.
* guix/import/github.scm (json-fetch*): New procedure.
(latest-released-version): Use it.
* guix/ui.scm (augmented-system-error-handler): New procedure.
(error-reporting-wrapper): New macro.
(symlink, copy-file): Define using 'error-reporting-wrapper'.
This is meant to ease transition for people running an older guix-daemon
invoking a recent 'guix perform-download' with only one argument.
This is a followup to 9b5364a3af.
* guix/scripts/perform-download.scm (perform-download): Make 'output'
optional. Bind 'output*' from DRV's "out" and honor it.
(guix-perform-download): Add clause with one argument.
* guix/utils.scm (package-name->name+version): Add optional 'delimiter'
parameter.
* guix/scripts/package.scm (store-item->manifest-entry): Pass #\- as the
delimiter for 'package-name->name+version'. Use "out" instead of #f for
the 'output' field.
* tests/guix-package.sh: Add test.
Fixes <http://bugs.gnu.org/25409>.
Reported by Ben Woodcroft <b.woodcroft@uq.edu.au>.
* guix/scripts/archive.scm: Use 'module-autoload!' instead of #:use-module
to (guix docker).
This allows users to type:
guix archive -f docker emacs
as was already the case for the 'nar' format.
Reported by David Thompson.
* guix/scripts/archive.scm (%default-options): Add 'format'.
(export-from-store): Dispatch based on the 'format' key in OPTS.
(guix-archive): Call 'export-from-store' in all cases when the 'export'
key is in OPTS.
* guix/docker.scm: New file.
* Makefile.am (MODULES): Register it.
* guix/scripts/archive.scm (show-help, %options, guix-archive): Add
support for "--format".
* doc/guix.texi (Invoking guix archive): Document it.
This leads a 13% speedup on 'guix build libreoffice -d' and 18% on
'guix build gnome -d'.
* guix/derivations.scm (%derivation-cache): New variable.
(read-derivation): Use it instead of the private 'cache' variable.
(derivation): Populate %DERIVATION-CACHE before returning.
* guix/derivations.scm (write-derivation)[write-input]: Use 'display'
instead of 'write' for PATH.
Use 'simple-format' instead of 'format', and '~a' instead of '~s' for
SYSTEM and BUILDER.
Tobias Geerinckx-Rice