Commit Graph

19375 Commits

Author SHA1 Message Date
Ben Woodcroft cda0f9a4a9
gnu: diamond: Update to 0.8.34.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.34.
2017-01-21 17:28:11 +10:00
Mark H Weaver 5aa0932eaf
gnu: linux-libre: Update to 4.9.5.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.5.
2017-01-20 21:56:02 -05:00
Mark H Weaver 523fe6a3ab
gnu: linux-libre@4.4: Update to 4.4.44.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.44.
2017-01-20 21:54:47 -05:00
Mark H Weaver 13c0eccbbb
gnu: linux-libre@4.1: Update to 4.1.38.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.38.
2017-01-20 21:48:43 -05:00
Ludovic Courtès 079f013be2
gnu: gnutls: Add 'guile2.2-gnutls'.
Suggested by Chris Webber.

* gnu/packages/tls.scm (gnutls/guile-2.2): New variable.
2017-01-20 21:39:17 +01:00
Ludovic Courtès be051880c4
services: Reindent vpn.scm.
This fixes indentation of 'match' forms.

* gnu/services/vpn.scm: Pass through 'indent-code.el'.
2017-01-20 21:39:17 +01:00
Ludovic Courtès 830d4c1fcd
etc: indent-code.el: Add indentation info for non-Guix Scheme constructs.
* etc/indent-code.el.in (guix-syntax--scheme-indent): New macro.
Use it.
2017-01-20 21:39:17 +01:00
Marius Bakke a50e030141
gnu: python-scipy, python-matplotlib: Fix build after Sphinx update.
* gnu/packages/python.scm (python-sphinx-1.2.3, python2-sphinx-1.2.3): New
variables.
(python-matplotlib)[native-inputs]: Change 'python-sphinx' to 'python-sphinx-1.2.3'.
(python2-matplotlib)[native-inputs]: New field.
(python-scipy)[native-inputs]: Change 'python-sphinx' to 'python-sphinx-1.2.3'.
(python2-scipy)[native-inputs]: New field.
2017-01-20 20:18:07 +01:00
Feng Shu 7386a0481c
gnu: Add fcitx-configtool.
* gnu/packages/fcitx.scm (fcitx-configtool): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-20 19:35:47 +01:00
Marius Bakke ff99fe6505
gnu: datamash: Update to 1.1.1.
* gnu/packages/datamash.scm (datamash): Update to 1.1.1.
2017-01-20 19:35:47 +01:00
Marius Bakke 53b8ee2881
gnu: gd: Fix source URL.
This is a followup to 3f0603ea65.

* gnu/packages/gd.scm (gd-2.2.4)[source]: Fix URL.
2017-01-20 19:35:46 +01:00
Leo Famulari 3f0603ea65
gnu: gd: Replace with gd-2.2.4 [fixes CVE-2016-{6912,9317} and others].
'CHANGELOG.md' in the development repository lists several fixed bugs with
potential security implications:

https://github.com/libgd/libgd/blob/gd-2.2.4/CHANGELOG.md

* gnu/packages/gd.scm (gd)[replacement]: New field.
(gd-2.2.4): New variable.
2017-01-20 10:30:08 -05:00
Ricardo Wurmus 2923f3e5b9
gnu: r-msnid: Expand abbreviation in description.
* gnu/packages/bioinformatics.scm (r-msnid)[description]: Expand "MS/MS"
to "tandem mass spectrometry".
2017-01-20 15:38:03 +01:00
Ricardo Wurmus e614d6398a
gnu: r-msnbase: Expand abbreviation in description.
* gnu/packages/bioinformatics.scm (r-msnbase)[description]: Expand "MS"
to "mass spectrometry".
2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal e431eb670d
gnu: Add r-fastica.
* gnu/packages/statistics.scm (r-fastica): New variable.
2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal 793f2edbbc
gnu: Add r-lars.
* gnu/packages/statistics.scm (r-lars): New variable.
2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal efba686c80
gnu: Add r-mixtools.
* gnu/packages/statistics.scm (r-mixtools): New variable.
2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal c6017f7222
gnu: Add r-cowplot.
* gnu/packages/statistics.scm (r-cowplot): New variable.
2017-01-20 15:38:02 +01:00
Christopher Baines b726096bc5
services: network-manager: Use record for configuration.
* gnu/services/network-manager.scm (<network-manager-configuration>): New
record type.
(network-manager-shpeherd-service): Change to use the
network-manager-configuration record, rather than a package.  Generate a
simple configuration file from the network-manager-configuration record.
(network-manager-service-type): Update extensions to take the
network-manager-configuration rather than a package.
(network-manager-service): Remove function, the network-manager-service-type
can be used instead, and this avoids keeping the function signature and value
coresponding to the service type in sync.
* doc/guix.texi (Networking Services): Remove documentation for the removed
network-manager-service procedure, and add documentation of the
network-manager-service-type variable and network-manager-configuration
record.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-01-20 21:45:56 +08:00
Efraim Flashner 4f98c3c553
gnu: obs: Update to 17.0.2.
* gnu/packages/video.scm (obs): Update to 17.0.2.
[inputs]: Add alsa-lib, fontconfig, speex.
2017-01-20 11:33:19 +02:00
Leo Famulari 10a8746968
gnu: mariadb: Update to 10.1.21 [security fixes].
Fixes CVE-2016-3238 and CVE-2017-{3238,3243,3244,3257,3258,3265,3291,3312,3317,
3318}.

* gnu/packages/databases.scm (mariadb): Update to 10.1.21.
2017-01-19 21:24:25 -05:00
Ludovic Courtès caa7816673
services: Create /var/run/utmpx upon activation.
This fixes a bug whereby /var/run/utmpx would never be created, and thus
accounting information would be missing.

* gnu/services.scm (activation-script): Create /var/run/utmpx.
* gnu/tests/base.scm (run-basic-test)["utmpx entry"]: New test.
2017-01-19 23:45:11 +01:00
Ludovic Courtès 150309726f
syscalls: Add utmpx procedures and data structure.
* guix/build/syscalls.scm (<utmpx-entry>): New record type.
(%utmpx): New C struct.
(login-type): New bits.
(setutxent, endutxent, getutxent, utmpx-entries): New procedures.
2017-01-19 23:21:25 +01:00
Ludovic Courtès 57f068bec5
syscalls: Extract 'bytes->string'.
* guix/build/syscalls.scm (bytes->string): New procedure.
(bytevector->string-list): Use it.
2017-01-19 23:20:57 +01:00
Marius Bakke db967b6462
gnu: python-scipy: Fix expression after changing to 'modify-phases'.
This is a followup to 16ca6aaac8.

* gnu/packages/python.scm (python-scipy)[arguments]: Fix parens.
2017-01-19 18:48:37 +01:00
Ludovic Courtès 0691c9c05d
gnu: ansible: Update to 2.2.1 [fixes CVE-2016-9587].
* gnu/packages/admin.scm (ansible): Update to 2.2.1.
2017-01-19 17:59:23 +01:00
Mathieu OTHACEHE d18b79fed8
import: github: Catch HTTP 403 error during fetch.
* guix/import/github.scm (json-fetch*): Catch 403 HTTP error that may be
  raised if a github token has not been set.

Signed-off-by: Mathieu OTHACEHE <m.othacehe@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-19 17:17:16 +01:00
Marius Bakke 16ca6aaac8
gnu: python-scipy: Use 'modify-phases' syntax.
* gnu/packages/python.scm (python-scipy)[arguments]: Use 'modify-phases'.
2017-01-19 16:59:28 +01:00
Danny Milosavljevic c8d7e063d0
gnu: Add python-reno.
* gnu/packages/openstack.scm (python-reno, python-reno2): New variables.
2017-01-19 16:36:38 +01:00
Danny Milosavljevic 7adb90311f
gnu: python-testtools: Update to 1.4.0.
* gnu/packages/python.scm (python-testtools): Update to 1.4.0.
  [source]: Use pypi-uri.
  [arguments]: New field.
2017-01-19 16:29:56 +01:00
Danny Milosavljevic d83d872259
gnu: Add python-dulwich.
* gnu/packages/python.scm (python-dulwich, python2-dulwich): New variables.
2017-01-19 15:34:46 +01:00
Ludovic Courtès 11f3885bb5
tests: Add 'nginx-service-type' test.
* gnu/tests/web.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2017-01-19 14:44:59 +01:00
Ludovic Courtès dc72a7f7f7
services: nginx: Add default values for <nginx-configuration> fields.
* gnu/services/web.scm (<nginx-configuration>)[nginx, log-directory]
[run-directory, server-blocks, upstream-blocks, file]: Add default
values.
2017-01-19 14:44:59 +01:00
Christopher Baines 9c557a69ae
services: nginx: Add support for 'location' blocks.
* gnu/services/web.scm (<nginx-server-configuration>): Add field 'locations'.
(<nginx-location-configuration>): New record type.
(<nginx-named-location-configuration>): New record type.
(nginx-location-config): New function.
(default-nginx-server-config): Include locations.
* doc/guix.texi (Web Services): Document the new nginx-location-configuration
and nginx-named-location-configuration data types, as well as the changes to
the nginx-server-configuration.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-19 14:44:59 +01:00
Christopher Baines cb341293fa
services: nginx: Add support the 'upstream' module.
* gnu/services/web.scm (<nginx-upstream-configuration>): New record type.
(<nginx-configuration>): Add new field upstream-blocks.
(nginx-upstream): New function.
(default-nginx-config): Add upstream-list parameter.
(nginx-service): Add optional upstream list keyword argument.
* doc/guix.texi (Web Services): Document the new nginx-upstream-configuration
data type and changes to the nginx function.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-19 14:44:59 +01:00
Christopher Baines cb6d322afc
gnu: dnsmasq: Enable dbus support.
* gnu/pacakges/dns.scm (dnsmasq): Enable dbus support to allow for
NetworkManager to use dnsmasq.
[native-inputs]: Add pkg-config.
[inputs]: Add dbus.
[arguments]: Add COPTS="-DHAVE_DBUS" to make-flags.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-01-19 20:05:24 +08:00
Ricardo Wurmus e87cb754a6
gnu: Add libgig.
* gnu/packages/music.scm (libgig): New variable.
2017-01-19 09:54:15 +01:00
Leo Famulari 8a9cffb202
doc: Show how to deploy any version of Guix.
* doc/guix.texi (Invoking guix pull): Give some examples of how to deploy
arbitrary Guix versions with the --url option.
2017-01-18 22:01:30 -05:00
Danny Milosavljevic b585e36184
gnu: Add python-fastimport.
* gnu/packages/python.scm (python-fastimport, python2-fastimport):
  New variables.
2017-01-19 00:39:49 +01:00
Danny Milosavljevic 376c4619cf
gnu: python-mox3: Remove python-oslosphinx dependency (since the tests don't run anyway).
* gnu/packages/openstack.scm (python-mox3)[native-inputs]: Remove python-oslosphinx.
2017-01-19 00:38:53 +01:00
Danny Milosavljevic c227458ac8
gnu: python-sphinx: Update to 1.5.1 and enable tests.
* gnu/packages/python.scm (python-sphinx): Update to 1.5.1.
  [arguments]: New field.
  [native-inputs]: Add graphviz, python-html5lib, python-mock, python-nose,
  python-requests.
  (python2-sphinx)[native-inputs]: Add python2-enum34.
2017-01-19 00:32:35 +01:00
Ludovic Courtès 840f38ba37
guix environment, build: Allow absolute file names with '--root'.
Reported by Chris Webber.

* guix/scripts/build.scm (register-root): If ROOT is absolute, keep it
as is.
* guix/scripts/environment.scm (register-gc-root): Likewise.
* tests/guix-environment.sh (expected): Add test.
2017-01-19 00:11:15 +01:00
Ludovic Courtès 67fee545cc
gnu: Add Heimdal.
* gnu/packages/kerberos.scm (heimdal): New variable.
2017-01-19 00:11:15 +01:00
Ludovic Courtès 89e34644d9
gnu: Move Kerberos implemetations to (gnu packages kerberos).
* gnu/packages/mit-krb5.scm: Remove.
* gnu/packages/shishi.scm: Remove.
* gnu/packages/kerberos.scm: New file, from the concatenation of these
two.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
* gnu/packages/admin.scm, gnu/packages/cyrus-sasl.scm,
gnu/packages/gnome.scm, gnu/packages/gnuzilla.scm,
gnu/packages/gsasl.scm, gnu/packages/java.scm,
gnu/packages/networking.scm, gnu/packages/nfs.scm,
gnu/packages/onc-rpc.scm, gnu/packages/ssh.scm,
gnu/packages/web.scm: Adjust accordingly.
2017-01-19 00:11:15 +01:00
ng0 877c6163fa
gnu: stagit: Update to 0.5.
* gnu/packages/version-control.scm (stagit): Update to 0.5.
2017-01-18 22:46:50 +01:00
Efraim Flashner 9ca1972767
gnu: qemu: Fix CVE-2017-5525, CVE-2017-5526.
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
* gnu/packages/patches/qemu-CVE-2017-5525.patch,
gnu/packages/patches/qemu-CVE-2017-5526.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-01-18 23:32:49 +02:00
Marius Bakke df893a3855
gnu: Add python-cram.
* gnu/packages/python.scm (python-cram, python2-cram): New variables.
2017-01-18 21:28:59 +01:00
Marius Bakke b9f771a795
gnu: Add leveldb.
* gnu/packages/databases.scm (leveldb): New variable.
2017-01-18 21:23:23 +01:00
ng0 cd4a232dd5
gnu: Add mcabber.
* gnu/packages/messaging.scm (mcabber): New variable.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-01-18 20:24:18 +01:00
ng0 fdfb4b9604
gnu: Add loudmouth.
* gnu/packages/messaging.scm (loudmouth): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-18 20:24:16 +01:00