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2173 Commits

Author SHA1 Message Date
Ricardo Wurmus 61f2587db9
gnu: python-rpy2: Move to (gnu packages statistics). 
* gnu/packages/python.scm (python-rpy2): Move from here...
* gnu/packages/statistics.scm (python-rpy2): ...to here.
 2019-01-07 15:55:06 +01:00
Ludovic Courtès 915c6bf60c
gnu: python2-fastlmm: Move to machine-learning.scm. 
This is a step towards removing OCaml modules from the closure
of (gnu packages python).

* gnu/packages/python.scm (python2-fastlmm): Move to...
* gnu/packages/machine-learning.scm (python2-fastlmm): ... here.
 2019-01-07 14:41:01 +01:00
Efraim Flashner 99e61f3022
gnu: python-pyicu: Update to 2.2. 
* gnu/packages/python.scm (python-pyicu): Update to 2.2.
 2019-01-06 11:09:59 +02:00
Efraim Flashner a0bb4af215
gnu: python-pysocks: Update to 1.6.8. 
* gnu/packages/python.scm (python-pysocks): Update to 1.6.8.
 2019-01-06 11:09:58 +02:00
Efraim Flashner 1fb68eefa1
gnu: python-packaging: Update to 18.0. 
* gnu/packages/python.scm (python-packaging): Update to 18.0.
 2019-01-06 11:09:58 +02:00
Efraim Flashner 3cf324665d
gnu: python-astroid: Update to 2.1.0. 
* gnu/packages/python.scm (python-astroid): Update to 2.1.0.
 2019-01-06 11:09:58 +02:00
Efraim Flashner 36df69d6fe
gnu: python-imagesize: Update to 1.1.0. 
* gnu/packages/python.scm (python-imagesize): Update to 1.1.0.
 2019-01-06 11:09:57 +02:00
Efraim Flashner 46930b7ea9
gnu: python-sphinx-alabaster-theme: Update to 0.7.12. 
* gnu/packages/python.scm (python-sphinx-alabaster-theme): Update to 0.7.12.
 2019-01-06 11:09:57 +02:00
Ricardo Wurmus 9fb5771af7
gnu: jupyter: Add missing dependency. 
* gnu/packages/python.scm (jupyter)[propagated-inputs]: Add python-qtconsole.
[home-page]: Use https URL.
[arguments]: Update comment on why tests are disabled.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 38306e1168
gnu: Add python-qtconsole. 
* gnu/packages/python.scm (python-qtconsole): New variable.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 91dd8b3687
gnu: python-notebook: Update to 5.7.4. 
* gnu/packages/python.scm (python-notebook): Update to 5.7.4.
[arguments]: Use INVOKE for tests.
[propagated-inputs]: Remove python-ipython; add python-prometheus-client,
python-send2trash, and python-terminado.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 493e5e6daa
gnu: python-jupyter-console: Fix inputs. 
* gnu/packages/python.scm (python-jupyter-console)[propagated-inputs]: Remove
python-ipython; replace python-prompt-toolkit with python-prompt-toolkit-1.
[native-inputs]: Add python-nose.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 4fc112b452
gnu: python-ipython: Remove dependency on python-jupyter-core-minimal. 
* gnu/packages/python.scm (python-ipython)[propagated-inputs]: Remove
python-jupyter-core-minimal.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 88bf9be38e
gnu: python-ipywidgets: Enable tests. 
* gnu/packages/python.scm (python-ipywidgets)[arguments]: Remove.
[native-inputs]: Add python-nose and python-pytest.
[propagated-inputs]: Remove python-ipykernel.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus fec14302d5
gnu: python-widgetsnbextension: Update to 3.4.2. 
* gnu/packages/python.scm (python-widgetsnbextension): Update to 3.4.2.
[propagated-inputs]: Add python-ipykernel.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus b6fc288e57
gnu: Add python-send2trash. 
* gnu/packages/python.scm (python-send2trash, python2-send2trash): New
variables.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus abe50aa369
gnu: Add python-prometheus-client. 
* gnu/packages/python.scm (python-prometheus-client,
python2-prometheus-client): New variables.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus ffabccb22f
gnu: python-jupyter-client: Update to 5.2.4. 
* gnu/packages/python.scm (python-jupyter-client): Update to 5.2.4.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 75246daff2
gnu: python-ipython: Break dependency on python-ipykernel. 
* gnu/packages/python.scm (python-ipython)[propagated-inputs]: Remove
python-ipykernel.
[arguments]: Delete more broken tests.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus f0eb442c20
gnu: python-ipykernel: Update to 5.1.0. 
* gnu/packages/python.scm (python-ipykernel): Update to 5.1.0.
[arguments]: Enable tests.
[propagated-inputs]: Add python-ipython.
[native-inputs]: Add python-pytest and python-nose.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 92a9f93615
gnu: python-ipython: Update to 5.8.0. 
* gnu/packages/python.scm (python-ipython): Update to 5.8.0.
[propagated-inputs]: Replace python-prompt-toolkit with
python-prompt-toolkit-1.
[arguments]: Use INVOKE in the "check" phase; return #T from the "fix-tests"
phase.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus 464cb5b55d
gnu: Add python-prompt-toolkit-1. 
* gnu/packages/python.scm (python-prompt-toolkit-1, python2-prompt-toolkit-1):
New variables.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus 80486d6673
gnu: python-prompt-toolkit: Update to 2.0.7. 
* gnu/packages/python.scm (python-prompt-toolkit): Update to 2.0.7.
[arguments]: Enable tests; add phase "post-install-check" and delete "check"
phase.
[native-inputs]: Add python-pytest.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus eecaf17086
gnu: python-hy: Use INVOKE. 
* gnu/packages/python.scm (python-hy)[arguments]: Use INVOKE.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus 13e7c884c7
gnu: python-clint: Use INVOKE. 
* gnu/packages/python.scm (python-clint)[arguments]: Use INVOKE.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus ec933e05a2
gnu: python-configargparse: Use INVOKE. 
* gnu/packages/python.scm (python-configargparse)[arguments]: Use INVOKE.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus cd70798a23
gnu: python-docopt: Use INVOKE. 
* gnu/packages/python.scm (python-docopt)[arguments]: Use INVOKE.
 2019-01-02 16:33:53 +01:00
Leo Famulari eff366b469
gnu: python-lxml: Update to 4.2.5 [fixes CVE-2018-19787]. 
* gnu/packages/python.scm (python-lxml, python2-lxml): Update to 4.2.5.
 2018-12-31 10:36:43 -05:00
Efraim Flashner fb075e2fda
gnu: python-apache-libcloud: Update to 2.4.0. 
* gnu/packages/python.scm (python-apache-libcloud): Update to 2.4.0.
 2018-12-26 12:29:45 +02:00
Vagrant Cascadian 9f23f6bc2f
gnu: python-pyelftools: Fix tests with python 3.7. 
* gnu/packages/python.scm (python-pyelftools)
  [native-inputs]: Remove python-setuptools.
  [arguments]: Add set-pythonpath phase.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2018-12-16 11:55:13 +02:00
Christopher Baines 95ae013092
gnu: python-celery: Update to 4.2.1. 
This is an attempt to get the package building after the update to Python
3.7. I'm not sure this totally works, as the tests detect an incompatibility
with Python 3.7 due to use of "async". But with the tests disabled, you can at
least import the celery module, which is a start.

* gnu/packages/python.scm (python-celery): Update to 4.2.1.
[arguments]: Switch to py.test, from nose, disable the tests and loosen the
requirements on pytest.
[native-inputs]: Remove python-nose, add python-pytest and python-case.
[home-page]: Change from HTTP to HTTPS.
 2018-12-12 09:03:28 +01:00
Christopher Baines ae218b75f6
gnu: python-billiard: Update to 3.5.0.5. 
This is to enable updating python-celery.

* gnu/packages/python.scm (python-billiard): Update to 3.5.0.5.
[native-inputs]: Remove python-nose, add python-case and python-pytest.
 2018-12-12 09:03:27 +01:00
Christopher Baines f6c19fe8ce
gnu: python-kombu: Update to 4.2.2. 
This fixes the build, that probably broke with a Python update.

* gnu/packages/python.scm (python-kombu): Update to 4.2.2..
 2018-12-12 09:03:27 +01:00
Christopher Baines a65a33d070
gnu: python-amqp: Update to 2.3.2. 
This is needed to update python-kombu to 4.2.2.

* gnu/packages/python.scm (python-amqp): Update to 2.3.2.
 2018-12-12 09:03:27 +01:00
Christopher Baines 9253c42973
gnu: Add python-pyro4. 
This is needed to update python-kombu to 4.2.2

* gnu/packages/python.scm (python-pyro4): New variable.
 2018-12-12 09:03:27 +01:00
Christopher Baines 2cfcab3aef
gnu: Add python-vine. 
This is needed to update python-amqp to 2.3.2.

* gnu/packages/python.scm (python-vine): New variable.
 2018-12-12 09:03:27 +01:00
Christopher Baines 679c979f25
gnu: Add python-case. 
This is required to update python-amqp and python-kombu, as well as adding
python-vine.

* gnu/packages/python.scm (python-case): New variable.
 2018-12-12 09:03:27 +01:00
Christopher Baines 053f3d4857
gnu: Add python-serpent. 
This is required for python-pyro4, which is needed to update python-amqp and
python-kombu.

* gnu/packages/python.scm (python-serpent): New variable.
 2018-12-12 09:03:26 +01:00
Rutger Helling 799f5d0df0
gnu: python-gevent: Remove unreliable test. 
* gnu/packages/python.scm (python-gevent): Add 'skip-timer-test phase from
python2-gevent.
* gnu/packages/python.scm (python2-gevent): Remove 'skip-timer-test phase,
inherit from python-gevent instead.
 2018-12-11 11:47:34 +01:00
Maxim Cournoyer 584d5556d4
gnu: python-jedi: Update to 0.13.1 and disable the tests. 
Jedi test suite fails when run with Python 3.7.

* gnu/packages/python.scm (python-jedi): Update to 0.13.1
[tests?] Disable.
[phases] Add condition check for the tests? argument to run the tests.
 2018-12-09 16:18:18 -05:00
Marius Bakke 08861d259b
gnu: python-pyaml: Update to 18.11.0. 
* gnu/packages/python.scm (python-pyaml): Update to 18.11.0.
 2018-12-08 19:37:47 +01:00
Leo Famulari ca45e49404
gnu: python-unidecode: Update to 1.0.23. 
* gnu/packages/python.scm (python-unidecode, python2-unidecode): Update to
1.0.23.
 2018-12-03 18:54:50 -05:00
Marius Bakke 635d29c244
gnu: python-scikit-image: Propagate six and numpy. 
* gnu/packages/python.scm (python-scikit-image)[native-inputs]: Move
PYTHON-NUMPY and PYTHON-SIX ...
[propagated-inputs]: ... here.
 2018-12-03 17:44:14 +01:00
Marius Bakke fcb5409438
gnu: python-scikit-image: Update to 0.14.1. 
Also add explicit Python2 variants for its dependency closure.

* gnu/packages/python.scm (python-scikit-image): Update to 0.14.1.
[source](uri): Use PYPI-URI.
[propagated-inputs]: Add PYTHON-CLOUDPICKLE, PYTHON-DASK, PYTHON-MATPLOTLIB
and PYTHON-PYWAVELETS.
(python2-toolz, python2-cloudpickle, python2-locket, python2-blosc,
python2-partd, python2-dask): New public variables.
 2018-12-03 17:44:14 +01:00
Marius Bakke 947ee67d4b
gnu: python-dask: Update to 1.0.0. 
* gnu/packages/python.scm (python-dask): Update to 1.0.0.
[arguments]: Disable one test for Python2, and override 'check' phase.
 2018-12-03 17:44:14 +01:00
Marius Bakke 03bfbe2f10
gnu: python-cloudpickle: Update to 0.6.1. 
* gnu/packages/python.scm (python-cloudpickle): Update to 0.6.1.
 2018-12-03 17:44:14 +01:00
Marius Bakke 36c90dda38
gnu: Add python-pywavelets. 
* gnu/packages/python.scm (python-pywavelets, python2-pywavelets): New public
variables.
 2018-12-03 17:44:14 +01:00
Marius Bakke aefcdea199
gnu: python-greenlet: Update to 0.4.15. 
* gnu/packages/python.scm (python-greenlet): Update to 0.4.15.
 2018-12-03 17:44:13 +01:00
Ludovic Courtès 194451347d
Merge branch 'core-updates' 2018-12-03 08:52:17 +01:00
Nicolas Goaziou b7ed32107b
gnu: python-pip: Update to 18.1. 
* gnu/packages/python.scm (python-pip): Update to 18.1.
 2018-12-02 09:47:16 +01:00