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30691 Commits

Author SHA1 Message Date
Ricardo Wurmus 482959ffa4
gnu: sambamba: Update to 0.6.7-10-g223fa20. 
* gnu/packages/bioinformatics.scm (sambamba)[source]: Fetch from git.
[arguments]: Disable parallel build; rename build phase "place-biod" to
"place-biod-and-undead"; add build phase "fix-ldc-version"; adjust phase
"unbundle-prerequisites".
[native-inputs]: Add python2-minimal; update biod sources; add undead sources.
 2018-04-06 17:12:15 +02:00
Ricardo Wurmus 262ee8eae2
gnu: htslib-for-sambamba: Fix build. 
* gnu/packages/bioinformatics.scm (htslib-for-sambamba)[arguments]: Do not
inherit htslib arguments.
 2018-04-06 17:12:07 +02:00
Marius Bakke 169c658f7f
gnu: tar: Skip racy tests. 
* gnu/packages/base.scm (tar)[arguments]: Skip two more tests in #:make-flags.
 2018-04-06 15:22:24 +02:00
Leo Famulari ae81bf4f99
gnu: certbot: Update to 0.23.0. 
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.23.0.
 2018-04-05 23:20:25 -04:00
Marius Bakke 3359a70834
gnu: make-bootstrap: Inherit tar arguments in %static-inputs. 
* gnu/packages/make-bootstrap.scm (%static-inputs)[tar]: Use
SUBSTITUTE-KEYWORD-ARGUMENTS so #:make-flags are inherited.
 2018-04-05 23:42:26 +02:00
Julien Lepiller cfb55cfc4a
gnu: Add java-native-access-platform. 
* gnu/packages/java.scm (java-native-access-platform): New variable.
 2018-04-05 19:48:06 +02:00
Julien Lepiller a970288c8e
gnu: Add java-native-access. 
* gnu/packages/java.scm (java-native-access): New variable.
 2018-04-05 19:48:00 +02:00
Julien Lepiller f7b512c084
gnu: Add java-jakarta-oro. 
* gnu/packages/java.scm (java-jakarta-oro): New variable.
 2018-04-05 19:47:58 +02:00
Julien Lepiller 5fe981dc83
gnu: Add java-commons-vfs. 
* gnu/packages/java.scm (java-commons-vfs): New variable.
 2018-04-05 19:47:56 +02:00
Julien Lepiller 5f5b31c63f
gnu: Add java-commons-httpclient. 
* gnu/packages/java.scm (java-commons-httpclient): New variable.
 2018-04-05 19:47:54 +02:00
Julien Lepiller afb13a1002
gnu: Add java-commons-bsf. 
* gnu/packages/java.scm (java-commons-bsf): New variable.
 2018-04-05 19:47:52 +02:00
Julien Lepiller 37602dd8ba
gnu: Update java-commons-cli to 1.4. 
* gnu/packages/java.scm (java-commons-cli): Update to 1.4.
 2018-04-05 19:47:50 +02:00
Julien Lepiller 49d743117b
gnu: Add java-jline-2. 
* gnu/packages/java.scm (java-jline-2): New variable.
 2018-04-05 19:47:46 +02:00
Leo Famulari d355245030
gnu: openssh: Update to 7.7p1. 
* gnu/packages/ssh.scm (openssh): Update to 7.7p1.
[arguments]: Set the test suite's working directory in #:make-flags.
 2018-04-05 11:51:55 -04:00
Marius Bakke 44e3e431cd
gnu: make-bootstrap: Adjust gawk patch to 4.2.1. 
* gnu/packages/patches/gawk-shell.patch: Update for 4.2.1.
 2018-04-05 17:07:43 +02:00
David Thompson 6de2af288f
gnu: tiled: Update to 1.1.4. 
* gnu/packages/game-development.scm (tiled): Update to 1.1.4.
 2018-04-05 09:41:24 -04:00
Pierre Neidhardt f27f264e51
gnu: Add subdl. 
* gnu/packages/video.scm (subdl): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-04-05 02:29:28 -04:00
Tobias Geerinckx-Rice fadc55330d
gnu: iptables: Remove trailing newline from description. 
...introduced in be5dc5fb18.

* gnu/packages/linux.scm (iptables)[description]: Remove trailing newline.
 2018-04-05 06:39:02 +02:00
Tobias Geerinckx-Rice 4bac91e1d8
gnu: perl-db-file: Update to 1.841. 
* gnu/packages/databases.scm (perl-db-file): Update to 1.841.
 2018-04-05 06:39:02 +02:00
Tobias Geerinckx-Rice 7b3a95e5d4
gnu: licensecheck: Update to 3.0.34. 
* gnu/packages/license.scm (licensecheck): Update to 3.0.34.
 2018-04-05 06:39:01 +02:00
Tobias Geerinckx-Rice 4b23535351
gnu: cppcheck: Update to 1.83. 
* gnu/packages/check.scm (cppcheck): Update to 1.83.
 2018-04-05 06:39:01 +02:00
Tobias Geerinckx-Rice 65cbfa7ebf
gnu: gama: Update to 1.22. 
* gnu/packages/gps.scm (gama): Update to 1.22.
 2018-04-05 06:39:01 +02:00
Tobias Geerinckx-Rice f560acf8d9
gnu: lmdb: Update to 0.9.22. 
* gnu/packages/databases.scm (lmdb): Update to 0.9.22.
 2018-04-05 06:39:01 +02:00
Tobias Geerinckx-Rice 36e8cfa19a
gnu: getmail: Update to 5.6. 
* gnu/packages/mail.scm (getmail): Update to 5.6.
 2018-04-05 06:39:00 +02:00
Tobias Geerinckx-Rice ada3b94ffb
gnu: jpegoptim: Use HTTPS home page. 
* gnu/packages/image.scm (jpegoptim)[home-page]: Use HTTPS.
 2018-04-05 06:39:00 +02:00
Tobias Geerinckx-Rice e8da8bb1cc
gnu: jpegoptim: Update to 1.4.5. 
* gnu/packages/image.scm (jpegoptim): Update to 1.4.5.
 2018-04-05 06:39:00 +02:00
Tobias Geerinckx-Rice 07922c501d
gnu: debootstrap: Update to 1.0.95. 
* gnu/packages/debian.scm (debootstrap): Update to 1.0.95.
 2018-04-05 06:39:00 +02:00
Tobias Geerinckx-Rice 00172e171c
gnu: czmq: Update to 4.1.1. 
* gnu/packages/networking.scm (czmq): Update to 4.1.1.
 2018-04-05 06:39:00 +02:00
Tobias Geerinckx-Rice ce9ae8a1c3
gnu: musescore: Update to 2.2.1. 
* gnu/packages/music.scm (musescore): Update to 2.2.1.
 2018-04-05 06:38:59 +02:00
Tobias Geerinckx-Rice 9767800687
gnu: mate-themes: Update to 3.22.16. 
* gnu/packages/mate.scm (mate-themes): Update to 3.22.16.
 2018-04-05 06:38:59 +02:00
Tobias Geerinckx-Rice fb5f8f0135
gnu: asymptote: Update to 2.42. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.42.
 2018-04-05 06:38:59 +02:00
Tobias Geerinckx-Rice 408626774b
gnu: Use HTTPS for statnet.org home pages. 
* gnu/packages/cran.scm (r-network, r-statnet-common, r-sna)[home-page]:
Use HTTPS and canonical domain name.
 2018-04-05 06:38:59 +02:00
Tobias Geerinckx-Rice 92edaaea27
gnu: r-network: Update to 1.13.0.1. 
* gnu/packages/cran.scm (r-network): Update to 1.13.0.1.
 2018-04-05 06:38:58 +02:00
Tobias Geerinckx-Rice ba578d937d
gnu: r-lmtest: Update to 0.9-36. 
* gnu/packages/cran.scm (r-lmtest): Update to 0.9-36.
 2018-04-05 06:38:58 +02:00
Tobias Geerinckx-Rice 14b78ca6dc
gnu: r-broom: Update to 0.4.4. 
* gnu/packages/cran.scm (r-broom): Update to 0.4.4.
 2018-04-05 06:38:58 +02:00
Tobias Geerinckx-Rice e155c6034b
gnu: r-ggthemes: Update to 3.4.2. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.4.2.
 2018-04-05 06:38:58 +02:00
Tobias Geerinckx-Rice 184020432b
gnu: r-caret: Update to 6.0-79. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-79.
 2018-04-05 06:38:57 +02:00
Tobias Geerinckx-Rice 0cb4fb81da
gnu: r-viridis: Update to 0.5.1. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.5.1.
 2018-04-05 06:38:57 +02:00
Tobias Geerinckx-Rice ec2a2682fe
gnu: r-matrix: Update to 1.2-13. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-13.
 2018-04-05 06:38:57 +02:00
Tobias Geerinckx-Rice 9ed1824eeb
gnu: r-cluster: Update to 2.0.7. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.7.
 2018-04-05 06:38:57 +02:00
Tobias Geerinckx-Rice 4c44dd7aca
gnu: r-glmnet: Update to 2.0-16. 
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-16.
 2018-04-05 06:38:56 +02:00
Tobias Geerinckx-Rice d22d746822
gnu: python-gst: Update to 1.12.5. 
* gnu/packages/gstreamer.scm (python-gst): Update to 1.12.5.
 2018-04-05 06:38:56 +02:00
Tobias Geerinckx-Rice dc944249d9
gnu: sshuttle: Update to 0.78.4. 
* gnu/packages/vpn.scm (sshuttle): Update to 0.78.4.
 2018-04-05 06:38:56 +02:00
Tobias Geerinckx-Rice bc32521a5b
gnu: nginx-documentation: Update to 2018-04-04-2131-dbaf3950f8e9. 
* gnu/packages/web.scm (nginx-documentation): Update to
2018-04-04-2131-dbaf3950f8e9.
 2018-04-05 06:38:55 +02:00
Tobias Geerinckx-Rice c70935a939
gnu: nginx: Update to 1.13.11. 
* gnu/packages/web.scm (nginx): Update to 1.13.11.
 2018-04-05 06:38:55 +02:00
Adam Massmann b357ccdd8b
gnu: xapers: Fix man page and xapers-adder installation 
* gnu/packages/search.scm (xapers)[arguments]: Adjust install-file
destinations in install-doc phase.

Signed-off-by: Eric Bavier <bavier@member.fsf.org>
 2018-04-04 21:19:08 -05:00
Leo Famulari b4eadf7e7f
gnu: syncthing: Update to 0.14.46. 
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.46.
 2018-04-04 18:31:12 -04:00
Leo Famulari dc0ec9914c
gnu: go-github-com-zillode-notify: Update to 0.0.0-3.53dd687. 
* gnu/packages/syncthing.scm (go-github-com-zillode-notify): Update to
0.0.0-3.53dd687.
[source]: Update URL.
[arguments]: Update #:import-path.
 2018-04-04 18:31:12 -04:00
Ludovic Courtès 81c63cfc6f
doc: Recommend nano during installation. 
* doc/guix.texi (Preparing for Installation)
(Proceeding with the Installation): Recommend nano.
 2018-04-04 23:14:36 +02:00
Ludovic Courtès 76a77ccaed
system: Add default '.nanorc' with syntax highlighting. 
* gnu/system/shadow.scm (default-skeletons): Add ".nanorc".
 2018-04-04 23:14:35 +02:00