aafaab22d3
gnu: r-annotationdbi: Update to 1.38.0.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.0.
2017-04-28 11:04:46 +02:00
b2fff403c8
gnu: r-biobase: Update to 2.36.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.0.
2017-04-28 11:04:44 +02:00
1859712bef
gnu: r-genomicranges: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.0.
2017-04-28 11:04:42 +02:00
17a02f5149
gnu: r-xvector: Update to 0.16.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.16.0.
2017-04-28 11:04:42 +02:00
abf5a14e11
gnu: r-limma: Update to 3.32.0.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.0.
2017-04-28 11:04:41 +02:00
d2d7af9832
gnu: r-variantannotation: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.0.
2017-04-28 11:04:40 +02:00
00ffd55fa1
gnu: r-edger: Update to 3.18.0.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.18.0.
2017-04-28 11:04:39 +02:00
38b99ccc57
gnu: r-genomeinfodb: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): [source] Update to 1.12.0,
[propagated-inputs]: Add r-genomeinfodbdata.
2017-04-28 11:04:37 +02:00
7d9ab5d920
gnu: r-iranges: Update to 2.10.0.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.0.
2017-04-28 11:04:36 +02:00
f1f380185b
gnu: r-s4vectors: Update to 0.14.0.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.0.
2017-04-28 11:04:34 +02:00
9b02d49cb0
gnu: r-dnacopy: Update to 1.50.0.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.0.
2017-04-28 11:04:33 +02:00
2e11beec48
gnu: r-bioccheck: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.12.0.
2017-04-28 11:04:32 +02:00
3bef24c968
gnu: r-biocstyle: Update to 2.4.0.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): [source] Update to 2.4.0.
[propagated-inputs]: Add r-bookdown, r-knitr, r-rmarkdown, r-yaml.
2017-04-28 11:04:31 +02:00
68eac34974
gnu: r-biocviews: Update to 1.44.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.44.0.
2017-04-28 11:04:30 +02:00
3bef15286a
gnu: r-biocinstaller: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.26.0.
2017-04-28 11:04:28 +02:00
28a5b3f2c6
gnu: r-biocgenerics: Update to 0.22.0.
...
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.22.0.
2017-04-28 11:04:26 +02:00
795a604526
gnu: r-grohmm: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.10.0.
2017-04-28 11:04:25 +02:00
026dc7e4fc
gnu: r-systempiper: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.10.0.
2017-04-28 11:04:24 +02:00
34c276f761
gnu: r-shortread: Update to 1.34.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.34.0.
2017-04-28 11:04:22 +02:00
9511773423
gnu: r-gostats: Update to 2.42.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.42.0.
2017-04-28 11:04:21 +02:00
ca0289aee7
gnu: r-category: Update to 2.42.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.0.
2017-04-28 11:04:20 +02:00
c584a07ffd
gnu: r-gseabase: Update to 1.38.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.38.0.
2017-04-28 11:04:19 +02:00
8ab6f241ea
gnu: r-rbgl: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.52.0.
2017-04-28 11:04:16 +02:00
46972a4427
gnu: r-annotationforge: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.0.
2017-04-28 11:04:12 +02:00
3ae74e451c
gnu: r-deseq2: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.0.
2017-04-28 11:04:09 +02:00
b5bc3a3963
gnu: r-genefilter: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.58.0.
2017-04-28 11:04:06 +02:00
97a50e4f34
gnu: r-geneplotter: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.54.0.
2017-04-28 11:03:59 +02:00
dbab99b6d2
gnu: r-annotate: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.54.0.
2017-04-28 11:03:47 +02:00
ffef27f3d2
gnu: Add r-genomeinfodbdata.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): New variable.
2017-04-28 10:17:06 +02:00
71e34e6b5b
gnu: Add r-delayedarray.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): New variable.
2017-04-28 10:15:12 +02:00
2abfc5b827
gnu: Add r-bookdown.
...
* gnu/packages/bioinformatics.scm (r-bookdown): New variable.
2017-04-28 10:09:31 +02:00
833361a483
gnu: linux-libre: Update to 4.10.13.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.13.
(%linux-libre-hash): Update hash.
2017-04-28 00:42:46 -04:00
f28851be95
gnu: linux-libre@4.9: Update to 4.9.25.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.25.
2017-04-28 00:40:48 -04:00
01c58cb3e9
gnu: linux-libre@4.4: Update to 4.4.64.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.64.
2017-04-28 00:39:53 -04:00
244d4f4877
gnu: serf: Update to 1.3.9.
...
* gnu/packages/patches/serf-comment-style-fix.patch,
gnu/packages/patches/serf-deflate-buckets-test-fix.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/web.scm (serf): Update to 1.3.9.
[source]: Remove patches.
2017-04-27 17:58:43 +02:00
decb4c26fa
gnu: serf: Disable expired SSL tests.
...
Fixes <https://bugs.gnu.org/26671 >.
* gnu/packages/web.scm (serf)[arguments]<#:phases>: Add 'disable-broken-tests'.
2017-04-27 17:58:43 +02:00
0d29f5aac5
gnu: kodi: Update to 18.0_alpha-3-749c61e.
...
* gnu/packages/kodi.scm (kodi): Update to 18.0_alpha-3-749c61e.
2017-04-27 17:58:43 +02:00
6373cddf42
gnu: tor: Update to 0.3.0.6.
...
* gnu/packages/tor.scm (tor): Update to 0.3.0.6.
2017-04-27 13:00:45 +02:00
baca533370
gnu: simple-scan: Update to 3.24.1.
...
* gnu/packages/gnome.scm (simple-scan): Update to 3.24.1.
2017-04-27 09:37:32 +02:00
d39a84e80c
gnu: Add mdbtools.
...
* gnu/packages/databases.scm (mdbtools): New variable.
2017-04-27 10:15:51 +05:30
2018eea07b
Merge branch 'staging'
2017-04-27 00:33:06 -04:00
be58ffa4aa
gnu: owncloud-client: Update to 2.3.1.
...
* gnu/packages/sync.scm (owncloud-client): Update to 2.3.1.
[arguments]: Enable more tests.
2017-04-26 22:04:01 +03:00
c9ba67a5f2
gnu: synergy: Update to 1.8.8.
...
* gnu/packages/synergy.scm (synergy): Update to 1.8.8.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-04-27 00:03:20 +05:30
b63106089a
gnu: Add Xfce Notification Daemon.
...
* gnu/packages/xfce.scm (xfce4-notifyd): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-04-26 16:32:24 +02:00
2766f9e84f
gnu: Add volk.
...
Fixes <http://bugs.gnu.org/26614 >.
* gnu/packages/engineering.scm (volk): New variable.
2017-04-26 15:59:09 +02:00
fadae857b7
gnu: nss-pam-ldapd: Add Kerberos support.
...
* gnu/packages/openldap.scm (nss-pam-ldapd)[inputs]: Add mit-krb5.
2017-04-26 13:10:00 +02:00
289a89801a
gnu: nss-pam-ldapd: Look for nslcd.conf in global /etc/ directory.
...
* gnu/packages/openldap.scm (nss-pam-ldapd)[arguments]: Set
"--with-ldap-conf-file" to look for global configuration file; add build phase
to install example configuration file in the package output directory.
2017-04-26 13:09:13 +02:00
efba832751
gnu: ethtool: Update to 4.10.
...
* gnu/packages/networking.scm (ethtool): Update to 4.10.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-04-26 11:42:16 +02:00
ce09f04ea0
gnu: ceph: Update to 12.0.2.
...
* gnu/packages/storage.scm (ceph): Update to 12.0.2.
[arguments]<#:phases>: Disable new test.
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust.
2017-04-26 11:39:33 +02:00
011b858b94
gnu: vte-ng: Update to 0.48.2.a.
...
* gnu/packages/gnome.scm (vte-ng): Update to 0.48.2.a.
[native-inputs]: Change GPERF-3.0 to GPERF.
2017-04-26 11:39:31 +02:00
b27aacbfe2
gnu: Add gcompris-qt.
...
* gnu/packages/education.scm (gcompris-qt): New variable.
2017-04-26 12:04:26 +03:00
4ad70ad8de
gnu: qtkeychain: Update to 0.8.0.
...
* gnu/packages/qt.scm (qtkeychain): Update to 0.8.0.
2017-04-26 09:42:13 +03:00
cd48a54902
gnu: fuse: Patch conflicting headers with the kernel.
...
* gnu/packages/linux.scm (fuse)[source]: Add patch.
* gnu/packages/patches/fuse-overlapping-headers.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-04-26 08:45:24 +03:00
d26ae96c3d
gnu: Add guile-sjson.
...
* gnu/packages/guile.scm (guile-sjson): Add guile-sjson.
2017-04-25 22:44:52 -05:00
623fb4d162
gnu: Add freexl.
...
* gnu/packages/xml.scm (freexl): New variable.
2017-04-25 22:15:34 +02:00
b8ebbefee2
gnu: duplicity: Update to 0.7.12.
...
* gnu/packages/backup.scm (duplicity): Update to 0.7.12.
2017-04-25 21:04:04 +02:00
b5f57f60d5
Update name on email address for Mathieu Othacehe.
2017-04-26 00:11:17 +05:30
39d2d9a7ab
Merge branch 'master' into staging
2017-04-25 14:27:03 -04:00
c2bae4a219
gnu: cmst: Update to 2017.03.18.
...
* gnu/packages/connman.scm (cmst): Update to 2017.03.18.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-04-25 23:33:08 +05:30
31c374e081
gnu: python-pysam: Disable tests.
...
* gnu/packages/bioinformatics.scm (python-pysam): Disable tests.
2017-04-25 14:05:59 +02:00
43ba5dd4eb
gnu: mpv: Update to 0.25.0.
...
* gnu/packages/video.scm (mpv): Update to 0.25.0.
[arguments]: Add explicit configure-flags to enable cdda, dvdread and dvdnav.
2017-04-24 22:38:14 +03:00
a2a15f6b21
gnu: speedtest-cli: Update to 1.0.5.
...
* gnu/packages/networking.scm (speedtest-cli): Update to 1.0.5.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-04-24 21:25:14 +03:00
b2955e224e
gnu: python-pysam: Fix tests, again.
...
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nosetests
explicitly with a single process.
2017-04-24 18:46:28 +02:00
c136240efc
gnu: diamond: Enable building on all architectures.
...
* gnu/packages/bioinformatics.scm (diamond)[supported-systems]: Remove
field.
2017-04-24 19:30:10 +03:00
f0ef7b47d3
gnu: libevent: Disable regress tests.
...
* gnu/packages/libevent.scm (libevent)[arguments]: Disable the 'regress'
tests.
2017-04-24 19:30:02 +03:00
0611abff32
gnu: wmfire: Update source code for new GDK versions.
...
* gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnustep.scm (wmfire)[source]: Add patch.
2017-04-24 11:23:31 -04:00
094f4b53af
gnu: unionfs-fuse: Enable tests.
...
* gnu/packages/linux.scm (unionfs-fuse)[arguments]: Replace 'check phase.
[native-inputs]: Add python, python-pytest.
2017-04-24 12:11:55 +03:00
2f861edf5c
gnu: unionfs-fuse: Update to 2.0.
...
* gnu/packages/linux.scm (unionfs-fuse): Update to 2.0.
[home-page]: Update to Github page.
2017-04-24 12:10:32 +03:00
092b7b3e69
gnu: wiredtiger: Enable building on aarch64-linux.
...
* gnu/packages/databases.scm (wiredtiger)[supported-systems]: Add
aarch64-linux to supported-systems.
2017-04-24 11:35:43 +03:00
0aa872eadf
gnu: reptyr: Remove aarch64 from supported systems.
...
* gnu/packages/screen.scm (reptyr)[supported-systems]: Remove
aarch64-linux from supported-systems.
2017-04-24 11:35:39 +03:00
8df1ee3f33
gnu: sdl-gfx: Enable building on all architectures.
...
* gnu/packages/sdl.scm (sdl-gfx)[arguments]: On non-Intel architectures
disable mmx processor instructions.
[supported-systems]: Remove field.
2017-04-24 11:35:35 +03:00
b9af056408
gnu: libsmpeg: Set source file-name.
...
* gnu/packages/video.scm (libsmpeg)[source]: Add file-name field.
2017-04-24 10:30:21 +03:00
43acfcb2c7
libcroco: Fix CVE-2017-{7960,7961}.
...
* gnu/packages/gnome.scm (libcroco)[replacement]: New field.
(libcroco/fixed): New variable.
* gnu/packages/patches/libcroco-CVE-2017-7960.patch,
gnu/packages/patches/libcroco-CVE-2017-7961.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-04-24 01:10:23 -04:00
8030679397
gnu: xorg-server@1.19.3: Correct hash.
...
This hash got reset back to 1.19.2 when 1f49cd546e1524851f58
2017-04-24 00:55:28 +02:00
638787307e
gnu: Add emacs-google-maps.
...
* gnu/packages/emacs.scm (emacs-google-maps): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-04-23 16:52:06 -04:00
a71d769d1e
gnu: r-minimal: Update to 3.4.0.
...
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.0.
[arguments]: Set timezone to UTC+1 in "set-timezone" phase to avoid regression
test failure.
2017-04-23 22:48:19 +02:00
d28fa5cc70
gnu: Add font-linuxlibertine.
...
* gnu/packages/fonts.scm (font-linuxlibertine): New variable.
2017-04-23 22:48:19 +02:00
f3bd17281a
gnu: obs: Mark as supported only on Intel systems.
...
* gnu/packages/video.scm (obs)[supported-systems]: New field.
[arguments]: Remove armhf and mips specific substitutions.
2017-04-23 22:16:46 +03:00
769df80ded
gnu: nss: Further increase test timeouts on armhf.
...
* gnu/packages/gnuzilla.scm (nss)[arguments]<#:phases>: Add a substitution
when target platform is armhf.
2017-04-23 11:34:45 +02:00
fd6ec6bd99
gnu: coreutils@8.27: Do not apply 'coreutils-cut-huge-range-test.patch'.
...
This patch is not needed in 8.27.
Reported by Mark H Weaver <mhw@netris.org>.
* gnu/packages/base.scm (coreutils-8.27)[arguments]: New field.
2017-04-23 01:24:57 +02:00
b59af0c0ce
gnu: Add aspell-dict-pt-br.
...
* gnu/packages/aspell.scm (aspell-dict-pt-br): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-23 01:24:42 +02:00
946742e3e5
gnu: guile-bytestructures: Update to 91d042e
...
* gnu/packages/guile.scm (guile-bytestructures): Update to 91d042e.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-23 01:00:39 +02:00
1524851f58
Merge branch 'master' into staging
2017-04-22 18:27:12 -04:00
ed9fb46b16
gnu: emacs-guix: Adjust to both 2.2 and 2.0.
...
* gnu/packages/emacs.scm (emacs-guix)[arguments]: In #:configure-flags,
use 'find-files' to determine the --with-guix-site-dir argument.
2017-04-23 00:03:17 +02:00
ab2419e56a
gnu: guix: Honor the effective Guile version.
...
* gnu/packages/package-management.scm (guix-0.12.0)[arguments]: In
'wrap-program' phase, use the effective Guile version rather than "2.0".
Add #:modules argument.
2017-04-23 00:03:17 +02:00
38f10b0c4e
gnu: guix: Update development snapshot.
...
* gnu/packages/package-management.scm (guix-devel): Update to 25a4929
2017-04-23 00:03:17 +02:00
3b74b7a283
gnu: r-caret: Update to 6.0-76.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-76.
[propagated-inputs]: Add r-lattice and r-nlme.
2017-04-22 23:30:38 +02:00
96071a6db2
gnu: r-lme4: Update to 1.1-13.
...
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-13.
[propagated-inputs]: Add r-lattice and r-matrix.
2017-04-22 23:30:38 +02:00
0d5bc9382a
gnu: r-quantreg: Update to 5.33.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.33.
[propagated-inputs]: Add r-matrix.
2017-04-22 23:30:38 +02:00
f1a313dfde
gnu: r-compquadform: Update to 1.4.3.
...
* gnu/packages/statistics.scm (r-compquadform): Update to 1.4.3.
2017-04-22 23:30:38 +02:00
50d0b2c158
gnu: r-zoo: Update to 1.8-0.
...
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-0.
2017-04-22 23:30:37 +02:00
1c21e2cf17
gnu: r-matrixstats: Update to 0.52.2.
...
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.2.
2017-04-22 23:30:37 +02:00
c9d200e3af
gnu: r-r-rsp: Update to 0.41.0.
...
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.41.0.
2017-04-22 23:30:37 +02:00
96338a91d5
gnu: r-rtsne: Update to 0.13.
...
* gnu/packages/statistics.scm (r-rtsne): Update to 0.13.
2017-04-22 23:30:37 +02:00
78a237f6b6
gnu: r-rcpparmadillo: Update to 0.7.800.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.800.2.0.
2017-04-22 23:30:37 +02:00
050d41ca87
gnu: r-memoise: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-memoise): Update to 1.1.0.
2017-04-22 23:30:36 +02:00
aa745eb61f
gnu: r-markdown: Update to 0.8.
...
* gnu/packages/statistics.scm (r-markdown): Update to 0.8.
2017-04-22 23:30:36 +02:00
958d0ee485
gnu: r-assertthat: Update to 0.2.0.
...
* gnu/packages/statistics.scm (r-assertthat): Update to 0.2.0.
2017-04-22 23:30:36 +02:00
2219e691bb
gnu: r-rpart: Update to 4.1-11.
...
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-11.
2017-04-22 23:30:36 +02:00
b3360e09a7
gnu: r-mass: Update to 7.3-47.
...
* gnu/packages/statistics.scm (r-mass): Update to 7.3-47.
2017-04-22 23:30:35 +02:00
Roel Janssen