93b83eb31e
services: Add hpcguix-web.
...
* gnu/service/web.scm (<hpcguix-web-configuration>): New record-type.
(%hpcguix-web-accounts): New variable.
(%hpcguix-web-activation,hpcguix-web-shepherd-service,
hpcguix-web-service-type): New procedures.
* gnu/tests/web.scm (run-hpcguix-web-server-test): New procedure.
(%hpcguix-web-specs, %hpcguix-web-os, %test-hpcguix-web): New variable.
* doc/guix.texi (Web Services): Add 'hpcguix-web'.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
d6a4dfec90
gnu: Add hpcguix-web.
...
* gnu/package/web.scm (hpcguix-web): New variable.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-06-01 13:50:26 +02:00
7a4e2eaab3
marionette: Add 'wait-for-tcp-port'.
...
* gnu/build/marionette.scm (wait-for-tcp-port): New procedure.
* gnu/tests/dict.scm (run-dicod-test)["connect inside"]: Use it instead
of the inline loop.
2018-06-01 13:50:26 +02:00
5ede50b850
gnu: emacs-w3m: Update and allow builds with Emacs 26.
...
* gnu/packages/emacs.scm (emacs-w3m)[source]: Grab the source from
github.com.
[native-inputs]: Add TEXINFO.
[arguments]: Add 'support-emacs!' phase. In 'patch-exec-paths' phase,
make w3m.el and w3m-image.el writable. Remove substitution for
'w3m-image-viewer', which no longer exists.
2018-06-01 13:50:26 +02:00
8674abb1dd
gnu: sddm: Fix CMake build.
...
* gnu/packages/display-managers.scm (sddm): Fix CMake build.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch: New file.
Signed-off-by: Rutger Helling <rhelling@mykolab.com>
2018-06-01 12:17:00 +02:00
8fc3a971b0
scripts: system: Sort profile generations in reverse order.
...
* guix/scripts/system.scm (profile-boot-parameters): Reverse
generation-numbers list. This allows old generations to be listed from most
recent to oldest in bootloaders configuration files.
2018-06-01 09:40:07 +02:00
e90322d201
gnu: prosody: Update to 0.10.2 [fixes CVE-2018-10847].
...
* gnu/packages/messaging.scm (prosody): Update to 0.10.2.
2018-05-31 20:31:46 -04:00
555ab0853b
gnu: Add emacs-zotxt.
...
* gnu/packages/emacs.scm (emacs-zotxt): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:09 +02:00
45dca193a4
gnu: Add emacs-org-caldav.
...
* gnu/packages/emacs.scm (emacs-org-caldav): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
ec8a9892d1
gnu: Add python-bigfloat.
...
* gnu/packages/python.scm (python-bigfloat, python2-bigfloat): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
73d854232f
gnu: bear: Fix python path.
...
* gnu/packages/build-tools.scm (bear)
[inputs]: Add python-wrapper.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
9768848af8
records: Make a couple of procedures available at expansion time.
...
* guix/records.scm (current-abi-identifier, abi-check): Wrap in
'eval-when'.
2018-05-31 18:13:08 +02:00
b1059b38b2
system: 'read-boot-parameters' provides a more meaningful warning.
...
'system' here was bound to Guile's 'system' procedure.
* gnu/system.scm (read-boot-parameters): Fix argument for fallback
warning.
2018-05-31 18:13:08 +02:00
69a05eab35
file-systems: Always wait for devices to show up.
...
Previously, 'canonicalize-device-spec' would wait for devices when they
were specified as a label or UUID, but would not wait when the user
passed a "/dev" file name directly. This could cause problems when
the /dev node takes a while to show up.
* gnu/build/file-systems.scm (canonicalize-device-spec): Add 'resolve'
call in the 'string?' case.
2018-05-31 18:13:08 +02:00
e13240f598
self: Reduce the set of dependencies.
...
By mistake we were adding more dependencies than needed to the Scheme
derivations.
* guix/self.scm (compiled-guix)[dependencies]: Use
'package-transitive-propagated-inputs', not 'package-transitive-inputs'.
2018-05-31 18:13:08 +02:00
404e5c7d7d
gnu: r-servr: Update to 0.10.
...
* gnu/packages/web.scm (r-servr): Update to 0.10.
[native-inputs]: Remove r-rcpp.
2018-05-31 13:21:31 +02:00
ce8b9e3b1c
gnu: r-seurat: Update to 2.3.1.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.1.
[propagated-inputs]: Remove r-gridextra; add r-reticulate.
2018-05-31 13:21:31 +02:00
508dd24abe
gnu: r-shiny: Update to 1.1.0.
...
* gnu/packages/web.scm (r-shiny): Update to 1.1.0.
[source]: Fetch from git.
[propagated-inputs]: Add r-crayon.
2018-05-31 13:21:31 +02:00
eb0d599a67
gnu: r-rjson: Update to 0.2.19.
...
* gnu/packages/web.scm (r-rjson): Update to 0.2.19.
2018-05-31 13:21:31 +02:00
71644c0ee8
gnu: r-htmltable: Update to 1.12.
...
* gnu/packages/web.scm (r-htmltable): Update to 1.12.
2018-05-31 13:21:31 +02:00
beb0878fe5
gnu: r-directlabels: Update to 2018.05.22.
...
* gnu/packages/statistics.scm (r-directlabels): Update to 2018.05.22.
2018-05-31 13:21:31 +02:00
089e037638
gnu: r-ranger: Update to 0.10.0.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.10.0.
2018-05-31 13:21:31 +02:00
14bb6f5f83
gnu: r-tclust: Update to 1.4-1.
...
* gnu/packages/statistics.scm (r-tclust): Update to 1.4-1.
2018-05-31 13:21:31 +02:00
9fad62743c
gnu: r-caret: Update to 6.0-80.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-80.
2018-05-31 13:21:31 +02:00
9bcc68fbf6
gnu: r-quantreg: Update to 5.36.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.36.
2018-05-31 13:21:31 +02:00
13dc492435
gnu: r-rrcov: Update to 1.4-4.
...
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-4.
2018-05-31 13:21:31 +02:00
6f96c2d89e
gnu: r-ggthemes: Update to 3.5.0.
...
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.5.0.
2018-05-31 13:21:31 +02:00
366dd8d7cb
gnu: r-runit: Update to 0.4.32.
...
* gnu/packages/statistics.scm (r-runit): Update to 0.4.32.
2018-05-31 13:21:31 +02:00
edb29f2986
gnu: r-purrr: Update to 0.2.5.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.5.
2018-05-31 13:21:31 +02:00
e94d827440
gnu: r-tidyr: Update to 0.8.1.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.1.
2018-05-31 13:21:31 +02:00
1957c20e0c
gnu: r-synchronicity: Update to 1.3.4.
...
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.4.
2018-05-31 13:21:31 +02:00
7da0790e2a
gnu: r-rngtools: Update to 1.3.1.
...
* gnu/packages/statistics.scm (r-rngtools): Update to 1.3.1.
2018-05-31 13:21:31 +02:00
3a6051659d
gnu: r-pkgmaker: Update to 0.27.
...
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.27.
[propagated-inputs]: Add r-bibtex, r-magrittr, r-stringi, and r-withr.
2018-05-31 13:21:31 +02:00
b4ca0076bd
gnu: r-lambda-r: Update to 1.2.3.
...
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.3.
2018-05-31 13:21:31 +02:00
a52bb97a79
gnu: r-plotrix: Update to 3.7-2.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-2.
2018-05-31 13:21:31 +02:00
1ce6be5ee2
gnu: r-data-table: Update to 1.11.4.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.4.
2018-05-31 13:21:31 +02:00
2d7758c1d6
gnu: r-rlang: Update to 0.2.1.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.2.1.
2018-05-31 13:21:31 +02:00
624283a107
gnu: r-knitrbootstrap: Update to 1.0.2.
...
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.2.
[propagated-inputs]: Add r-markdown.
2018-05-31 13:21:31 +02:00
22cdc16fa4
gnu: r-pheatmap: Update to 1.0.10.
...
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.10.
2018-05-31 13:21:31 +02:00
99b225f3eb
gnu: r-bit: Update to 1.1-14.
...
* gnu/packages/statistics.scm (r-bit): Update to 1.1-14.
2018-05-31 13:21:31 +02:00
3c441be0f3
gnu: r-kernlab: Update to 0.9-26.
...
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-26.
2018-05-31 13:21:31 +02:00
ad016826c9
gnu: r-rmysql: Update to 0.10.15.
...
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.15.
2018-05-31 13:21:31 +02:00
aea3be250c
gnu: r-mice: Update to 3.0.0.
...
* gnu/packages/cran.scm (r-mice): Update to 3.0.0.
[propagated-inputs]: Add r-broom, r-dplyr, r-mitml, and r-rlang.
2018-05-31 13:21:31 +02:00
6034a62a1b
gnu: r-callr: Update to 2.0.4.
...
* gnu/packages/cran.scm (r-callr): Update to 2.0.4.
[propagated-inputs]: Add r-processx; remove r-assertthat, r-crayon, r-debugme,
and r-testthat.
2018-05-31 13:21:31 +02:00
a8b4677b7c
gnu: r-openxlsx: Update to 4.1.0.
...
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.
[propagated-inputs]: Add r-zip.
2018-05-31 13:21:31 +02:00
e86d3cc501
gnu: r-shinyace: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.1.
[propagated-inputs]: Add r-jsonlite.
2018-05-31 13:21:31 +02:00
a80606308a
gnu: r-processx: Update to 3.1.0.
...
* gnu/packages/cran.scm (r-processx): Update to 3.1.0.
[propagated-inputs]: Remove r-debugme; add r-testthat.
2018-05-31 13:21:31 +02:00
9944399ae3
gnu: r-ggally: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-ggally): Update to 1.4.0.
[inputs]: Add libressl.
[propagated-inputs]: Add r-rlang.
2018-05-31 13:21:31 +02:00
13079c143b
gnu: r-psych: Update to 1.8.4.
...
* gnu/packages/cran.scm (r-psych): Update to 1.8.4.
2018-05-31 13:21:31 +02:00
aadb9ee6df
gnu: r-pillar: Update to 1.2.3.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.2.3.
2018-05-31 13:21:31 +02:00
Rouby Pierre-Antoine