Commit Graph

4422 Commits

Author SHA1 Message Date
Ludovic Courtès 9ff87bb996
Merge branch 'master' into core-updates 2019-09-17 16:27:15 +02:00
Efraim Flashner 74e7465c9b
Revert "build-system/r: Use %bioconductor-version."
This reverts commit 41ca406fa5.

This commit breaks 'guix pull', as reported by Hao Chen.
2019-09-16 14:34:15 +03:00
Ricardo Wurmus 41ca406fa5
build-system/r: Use %bioconductor-version.
* guix/build-system/r.scm (bioconductor-uri): Use %bioconductor-version
instead of hard-coding the version string.
2019-09-16 12:26:25 +02:00
Ricardo Wurmus 76c0b60821
import/cran: Export %bioconductor-version.
* guix/import/cran.scm (%bioconductor-version): Export it.
2019-09-16 12:26:25 +02:00
Ludovic Courtès 0074844366
pack: Provide a meaningful "repository name" for Docker.
Previously, images produced by 'guix pack -f docker' would always show
up as "profile" in the output of 'docker images'.  With this change,
'docker images' shows a name constructed from the packages found in the
image--e.g., "bash-coreutils-grep-sed".

* guix/docker.scm (canonicalize-repository-name): New procedure.
(generate-tag): Remove.
(manifest): Add optional 'tag' parameter and honor it.
(repositories): Likewise.
(build-docker-image): Add #:repository parameter and pass it to
'manifest' and 'repositories'.
* guix/scripts/pack.scm (docker-image)[build]: Compute 'tag' and pass it
as #:repository to 'build-docker-image'.
2019-09-16 10:25:31 +02:00
Ludovic Courtès 9bbaf2ae72
pack: Add packages in the order in which they appear on the command line.
* guix/scripts/pack.scm (guix-pack)[manifest-from-args](packages):
Reverse order of packages taken from OPTS.
2019-09-16 10:25:16 +02:00
Ricardo Wurmus 6e377b8893
import/utils: beautify-description: Recognize more fragments.
* guix/import/utils.scm (beautify-description): Handle additional common
initial sentence fragments in descriptions.
2019-09-14 00:37:47 +02:00
Efraim Flashner 3af85f832d
build-system/cargo: Remove unused function.
* guix/build/cargo-build-system.scm (touch): Remove it.
2019-09-13 15:20:27 +03:00
Efraim Flashner 43ffa11fdc
build-system/cargo: Use 'strip-store-file-name'.
This is a follow-up to f58b2f38e4.

* guix/build/cargo-build-system.scm (configure): Use bespoke
'strip-store-file-name' function.
2019-09-13 15:20:16 +03:00
Ludovic Courtès 5ccec77176
file-systems: Add /var/run/nscd to '%network-file-mappings'.
This allows containers created by "guix environment -CN" or by
"guix system container -N" to talk to the host nscd.

* gnu/system/file-systems.scm (%network-file-mappings): Add
"/var/run/nscd".
* gnu/build/shepherd.scm (default-mounts)[nscd-socket]: Remove.
* gnu/system/linux-container.scm (container-script)[nscd-run-directory]
[nscd-mapping, nscd-os, nscd-specs]: Remove.
[script]: Filter out from SPECS bind-mounts where the device does not
exist.
* guix/scripts/environment.scm (launch-environment/container)
[optional-mapping->fs]: New procedure.
[mappings]: Remove %NETWORK-FILE-MAPPINGS.
[file-systems]: Add %NETWORK-FILE-MAPPINGS here, filtered through
'optional-mapping->fs'.
2019-09-12 23:07:42 +02:00
Efraim Flashner f58b2f38e4
build: cargo-build-system: Strip store hash from vendor-dir.
* guix/build/cargo-build-system.scm (configure): When copying the
sources into the vendor-dir strip off the hash before the package name.
2019-09-12 20:22:46 +03:00
Hartmut Goebel 4eb69bf0d3
import: KDE updater finds packages even in sub-directory.
Fixes <http://issues.guix.gnu.org/issue/30345> and
finally fixes <http://issues.guix.gnu.org/issue/25020>.

Formerly packages living in a path like
/stable/frameworks/5.60/portingAids/kross-5.60.0.tar.xz
have not been found.

* guix/import/kde.scm (uri->kde-path-pattern): New procedure.
  (latest-kde-release): Use pattern to search for file.
2019-09-10 19:04:06 +02:00
Hartmut Goebel d1dce0c363
upstream: Move KDE updater into a separate module.
As it was done for (guix import gnome).

* guix/import/kde.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/gnu-maintenance.scm (%kde-updater) (%kde-file-list-uri)
  (download.kde.org-files) (latest-kde-release): Remove.
2019-09-10 19:04:06 +02:00
Hartmut Goebel 33f53947aa
gnu-maintenance: KDE updater no longer relies on FTP access.
Fetch the ls-lR.bz2 file list for download.kde.org, convert it into a list of
file paths and cache the list.

* guix/gnu-maintenance.scm (%kde-file-list-uri): New variable.
  (download.kde.org-files): New procedure.
  (latest-kde-release): Change to use DOWNLOAD.KDE.ORG-FILES and search
  for files in this list.
2019-09-10 19:04:06 +02:00
Hartmut Goebel da1027a705
guix: Rename and move sans-extension to tarball-sans-extension.
* guix/gnu-maintenance.scm (sans-extension): Move and rename to ...
* guix/utils.scm (tarball-sans-extension): ... here.
2019-09-10 19:04:05 +02:00
Martin Becze fd63ecbe05
import: crate: Allow imports of a specific version.
* guix/import/crate.scm (crate->guix-package): Add optional 'version'
argument and honor it.
* guix/scripts/import/crate.scm (guix-import-crate): Assume the first
argument is a spec and destructure it with
'package-name->name+version'.  Pass both to 'crate->guix-package'.
* doc/guix.texi (Invoking guix import): Document it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-09-10 00:34:40 +02:00
Ludovic Courtès 7c101c4c17
refresh: Distinguish between "no updater" and "failing updater".
Previously, something like "guix refresh texmacs" would report "no
updater".  Now, it reports that the 'gnu-ftp' updater failed to list
releases.

* guix/upstream.scm (lookup-updater): Use 'find' instead of 'any' to
return the <upstream-updater>.
(package-latest-release): Adjust accordingly.
* guix/scripts/refresh.scm (check-for-package-update): When
'package-latest-release' returns #f, distinguish between "no updater"
and "failing updater".
2019-09-10 00:34:40 +02:00
Ludovic Courtès 36eef80d45
packages: 'package-field-location' really catches 'system-error.
This had been wrong since forever (i.e., 2013).

* guix/packages.scm (package-field-location): Catch 'system-error, not
'system.
2019-09-10 00:34:40 +02:00
Ludovic Courtès 982a94e97e
import: github: Fix incorrect no-release case.
This is a followup to 81c3dc3224.

Since that commit, when /releases returned an empty JSON array, we would
not fall back to /tags because of the incorrect match.

* guix/import/github.scm (fetch-releases-or-tags): Match the empty
vector instead of the empty list.
2019-09-08 14:43:41 +02:00
Ludovic Courtès 2e3e5d2198
daemon: Invoke 'guix gc --list-busy' instead of 'list-runtime-roots'.
* nix/scripts/list-runtime-roots.in: Remove.
* guix/store/roots.scm (%proc-directory): New variable.
(proc-file-roots, proc-exe-roots, proc-cwd-roots)
(proc-fd-roots, proc-maps-roots, proc-environ-roots)
(referenced-files, canonicalize-store-item, busy-store-items): New
procedures, taken from 'list-runtime-roots.in'.
* nix/libstore/globals.hh (Settings)[guixProgram]: New field.
* nix/libstore/globals.cc (Settings::processEnvironment): Initialize
'guixProgram'.
* nix/libstore/gc.cc (addAdditionalRoots): Drop code related to
'NIX_ROOT_FINDER'.  Run "guix gc --list-busy".
* nix/local.mk (nodist_pkglibexec_SCRIPTS): Remove
'scripts/list-runtime-roots'.
* config-daemon.ac: Don't output nix/scripts/list-runtime-roots.
* build-aux/pre-inst-env.in: Don't set 'NIX_ROOT_FINDER'.
Set 'GUIX'.
* doc/guix.texi (Invoking guix gc): Document '--list-busy'.
* guix/scripts/gc.scm (show-help, %options): Add "--list-busy".
(guix-gc)[list-busy]: New procedure.
Handle the 'list-busy' action.
2019-09-08 11:49:24 +02:00
Mark H Weaver 65542a8852
Merge branch 'master' into core-updates 2019-09-06 20:46:00 -04:00
Ludovic Courtès bc60349b5b
packages: 'supported-package?' binds '%current-system' for graph traversal.
Previously, (supported-package? coreutils "armhf-linux")
with (%current-system) = "x86_64-linux" would return false.  That's
because 'supported-package?' would traverse the x86_64 dependency graph,
which contains 'tcc-boot0', which supports x86 only.

Consequently, 'supported-package?' would match only 53 packages for
"armhf-linux" when running on x86, as is the case during continuous
integration.

* guix/packages.scm (package-transitive-supported-systems): Add an
optional 'system' parameter.  Use 'mlambda' instead of 'mlambdaq' for
memoization.
(supported-package?): Pass 'system' to 'package-transitive-supported-systems'.
* tests/packages.scm ("package-transitive-supported-systems, implicit inputs")
("package-transitive-supported-systems: reduced binary seed, implicit inputs"):
Remove calls to 'invalidate-memoization!', which no longer work and were
presumably introduced to work around the bug we're fixing (see commit
0db65c168f).
* tests/packages.scm ("supported-package?"): Rewrite test to use only
existing system name since otherwise 'bootstrap-executable' raises an
exception.
("supported-package? vs. system-dependent graph"): New test.
2019-09-06 14:41:58 +02:00
Ludovic Courtès 67c2db17bc
download: Pass 'http_proxy' et al. to git, hg, etc.
This allows 'git-fetch' etc. origins to honor the proxy and locale of
the daemon.

* guix/bzr-download.scm (bzr-fetch): Pass #:leaked-env-vars to
'gexp->derivation'.
* guix/cvs-download.scm (cvs-fetch): Likewise.
* guix/git-download.scm (git-fetch): Likewise.
* guix/hg-download.scm (hg-fetch): Likewise.
* guix/svn-download.scm (svn-multi-fetch): Likewise.
2019-09-05 18:33:30 +02:00
Pierre Neidhardt 01e38cc426
build-system/asdf: Add option to compress programs.
* guix/build/lisp-utils.scm (build-program): Add `compress?' key argument.
(generate-executable-for-system): Same.
(generate-executable): Same.
2019-09-05 09:56:21 +02:00
Marius Bakke 56b1977a5d
build-system/julia: Avoid module cycles.
* guix/build-system/julia.scm: Remove unused imports.
(lower)[julia]: Default to (DEFAULT-JULIA).
2019-09-05 00:20:41 +02:00
Ricardo Wurmus 458b07ebe0
build-system/julia: Fix syntax error.
* guix/build-system/julia.scm: Fix invalid module reference.
2019-09-04 23:56:24 +02:00
Julien Lepiller b2f810fe93
import: opam: Use propagated-inputs instead of inputs.
* guix/import/opam.scm (opam->guix-package): Use propagated-inputs instead of inputs.
2019-09-04 23:08:16 +02:00
Julien Lepiller d3366a8ee8
import: opam: Remove initial "v" in some version numbers.
* guix/import/opam.scm (opam-fetch): Remove initial "v" in some version numbers.
2019-09-04 23:07:55 +02:00
nixo a44a535ebe
build: Add julia-build-system.
* guix/build/julia-build-system.scm: New file.
* guix/build-system/julia.scm: New file.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build Systems): Document julia-build-system.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-09-04 22:17:38 +02:00
Ludovic Courtès 191668bc97
import: crate: Correct interpretation of dual-licensing strings.
* guix/import/crate.scm (%dual-license-rx): New variable.
(crate->guix-package)[string->license]: Rewrite to match it.
* tests/crate.scm (test-crate): Adjust "license" field to current
practice.
2019-09-04 13:02:27 +02:00
Ludovic Courtès 2791870d09
import: crate: Separate crates.io API from actual conversion.
This provides a clean separation between bindings to the
https://crates.io/api/v1 API and actual conversion to Guix package
sexps.

As a side-effect, it fixes things like "guix import blake2-rfc", "guix
refresh -t crates", etc.

* guix/import/crate.scm (<crate>, <crate-version>, <crate-dependency>):
New record types.
(lookup-crate, crate-version-dependencies): New procedures.
(crate-fetch): Remove.
(crate->guix-package): Rewrite to use the new API.
(latest-release): Likewise.
* guix/build-system/cargo.scm (%crate-base-url): New variable.
* tests/crate.scm (test-crate): Update accordingly.

fixlet
2019-09-04 13:02:27 +02:00
Ludovic Courtès a85a74ce6c
ci: Use (guix json) and adjust for Guile-JSON 3.x.
This is in part a followup to 81c3dc3224.

* guix/ci.scm (<build>, <checkout>, <evaluation>): Define using
'define-json-mapping'.
(json->build, json->checkout, json->evaluation): Remove.
(queued-builds, latest-builds, latest-evaluations): Pass JSON arrays
through 'vector->list' to adjust for Guile-JSON 3.x.
(evaluations-for-commit): Fix typo to really export.
2019-09-04 13:02:27 +02:00
Ludovic Courtès 76073d29e1
Add (guix json).
* guix/swh.scm (define-json-reader, define-json-mapping): Move to...
* guix/json.scm: ... here.  New file.
* Makefile.am (MODULES): Add it.
2019-09-04 13:02:27 +02:00
Ludovic Courtès 91300526b7
deploy: Add missing store options.
* guix/scripts/deploy.scm (%default-options): Add missing options such
as 'print-build-trace?', etc.
2019-09-04 13:02:27 +02:00
Ludovic Courtès 55549c7b9b
lint: Add 'archival' checker.
* guix/lint.scm (check-archival): New procedure.
(%network-dependent-checkers): Add 'archival' checker.
* tests/lint.scm ("archival: missing content")
("archival: content available")
("archival: missing revision")
("archival: revision available")
("archival: rate limit reached"): New tests.
* doc/guix.texi (Invoking guix lint): Document it.
2019-09-02 15:25:01 +02:00
Ludovic Courtès d370cc7319
swh: Make 'commit-id?' public.
* guix/swh.scm (commit-id?): Make public.
2019-09-02 15:25:01 +02:00
Ludovic Courtès ba1c1853a7
swh: Add hooks for rate limiting handling.
* guix/swh.scm (%allow-request?, %save-rate-limit-reset-time)
(%general-rate-limit-reset-time): New variables.
(request-rate-limit-reached?, update-rate-limit-reset-time!): New
procedures.
(call): Call '%allow-request?'.  Change 'swh-error' protocol to pass
METHOD in addition to URL.
* tests/swh.scm ("rate limit reached")
("%allow-request? and request-rate-limit-reached?"): New tests.
2019-09-02 15:25:01 +02:00
Ludovic Courtès 9323ab550f
tests: 'with-http-server' accepts multiple responses.
* guix/tests/http.scm (call-with-http-server): Replace 'code' and 'data'
parameters with 'responses+data'.  Compute RESPONSES as a function of
that.  Remove #:headers parameter.
[http-write]: Quit only when RESPONSES is empty.
[server-body]: Get the response and data from RESPONSES, and set it to
point to the rest.
(with-http-server): Adjust accordingly.
* tests/derivations.scm ("'download' built-in builder")
("'download' built-in builder, invalid hash")
("'download' built-in builder, not found")
("'download' built-in builder, check mode"): Adjust to new
'with-http-server' interface.
* tests/lint.scm ("home-page: 200")
("home-page: 200 but short length")
("home-page: 404", "home-page: 301, invalid"):
("home-page: 301 -> 200", "home-page: 301 -> 404")
("source: 200", "source: 200 but short length")
("source: 404", "source: 404 and 200")
("source: 301 -> 200", "source: 301 -> 404"):
("github-url", github-url): Likewise.
* tests/swh.scm (with-json-result)
("lookup-origin, not found"): Likewise.
2019-09-02 15:25:01 +02:00
Ricardo Wurmus 8786fec485
import: cran: Only use the git import with what looks like a URL.
* guix/import/cran.scm (fetch-description): Abort if the argument does not
look like a URL.
2019-09-02 14:46:04 +02:00
Ricardo Wurmus c7358ac4fc
import: cran: Retry failed git imports on Bioconductor.
* guix/import/cran.scm (cran->guix-package): Retry failed git imports on
Bioconductor.
2019-09-02 14:45:17 +02:00
Efraim Flashner 2f43e5db1c
build/cargo-build-system: Use invoke.
* guix/build/cargo-build-system.scm (crate-src?, build, check,
install): Use 'invoke'.
2019-09-02 11:07:53 +03:00
Ludovic Courtès 900e0fbcc4
lint: Gracefully handle errors from 'connect' & co.
* guix/lint.scm (call-with-networking-fail-safe): Add case for
'system-error' as typically raised by 'connect' & co.
2019-08-31 21:04:09 +02:00
Ludovic Courtès c3e59de9b1
guix system: Reinstalling the bootloader preserves extra menu entries.
Fixes <https://bugs.gnu.org/36876>.
Reported by Jesse Gibbons <jgibbons2357@gmail.com>.

Previously 'guix system delete-generations' or 'switch-generation' would
lose the extra bootloader menu entries specified in the current system's
configuration.  This fixes that.

* guix/scripts/system.scm (reinstall-bootloader): Turn PARAMS into a
single <boot-parameters>.  Adjust ENTRIES to include extra menu entries
specified in PARAMS.
2019-08-30 01:33:45 +02:00
Ludovic Courtès 7d09f2e85f
lint: formatting: Reporters return #f or a warning.
* guix/lint.scm (report-tabulations, report-trailing-white-space)
(report-long-line, report-lone-parentheses): Return #f instead
of *unspecified* when there are no warnings.
(report-formatting-issues): Use 'filter-map' instead of 'map' + 'filter'.
2019-08-30 01:33:45 +02:00
Mark H Weaver 0481289cbc
Merge branch 'master' into core-updates 2019-08-29 17:19:18 -04:00
Ricardo Wurmus ad553ec4b1
import: cran: Add support for git repositories.
* guix/import/cran.scm (vcs-file?): New procedure.
(download): Support downloading from git.
(fetch-description): Add a clause for the 'git repository type.
(files-match-pattern?): New procedure.
(tarball-files-match-pattern?): Implement in terms of FILES-MATCH-PATTERN?.
(directory-needs-fortran?, directory-needs-zlib?,
directory-needs-pkg-config?): New procedures.
(needs-fortran?, needs-zlib?, needs-pkg-config?): Rename these procedures...
(tarball-needs-fortran?, tarball-needs-zlib?, tarball-needs-pkg-config?):
...to this, and use them.
(file-hash): New procedure.
(description->package): Handle the 'git repository type.
* guix/import/utils.scm (package->definition): Handle package expression
inside of a let.
* guix/scripts/import.scm (guix-import): Handle let expressions.
* doc/guix.texi (Invoking guix import): Document it.
2019-08-29 11:38:12 +02:00
Ricardo Wurmus 54ddd85220
import: cran: guix-import-cran: Use (guix import utils).
* guix/scripts/import/cran.scm (guix-import-cran): Use PACKAGE->DEFINITION
from (guix import utils) instead of custom procedure.
2019-08-29 08:06:54 +02:00
Ludovic Courtès dae950ca50
deploy: Do not quote error messages.
* guix/scripts/deploy.scm (guix-deploy): Do not quote the message.
2019-08-28 18:52:52 +02:00
Ludovic Courtès e09c7f4ae4
remote, ssh: Show the command exit status upon failure.
* guix/remote.scm (remote-pipe-for-gexp): Show the exit status in error
message.
* guix/ssh.scm (remote-inferior): Likewise.
2019-08-28 18:52:52 +02:00
Ludovic Courtès d229215051
diagnostics: Avoid highlighting complete messages.
* guix/diagnostics.scm (%highlight-argument): Don't highlight ARG if it
contains white space.
2019-08-28 18:52:52 +02:00