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20596 Commits

Author SHA1 Message Date
Ricardo Wurmus 0d5bc9382a
gnu: r-quantreg: Update to 5.33. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.33.
[propagated-inputs]: Add r-matrix.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus f1a313dfde
gnu: r-compquadform: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-compquadform): Update to 1.4.3.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus 50d0b2c158
gnu: r-zoo: Update to 1.8-0. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 1c21e2cf17
gnu: r-matrixstats: Update to 0.52.2. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.2.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus c9d200e3af
gnu: r-r-rsp: Update to 0.41.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.41.0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 96338a91d5
gnu: r-rtsne: Update to 0.13. 
* gnu/packages/statistics.scm (r-rtsne): Update to 0.13.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 78a237f6b6
gnu: r-rcpparmadillo: Update to 0.7.800.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.800.2.0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 050d41ca87
gnu: r-memoise: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-memoise): Update to 1.1.0.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus aa745eb61f
gnu: r-markdown: Update to 0.8. 
* gnu/packages/statistics.scm (r-markdown): Update to 0.8.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus 958d0ee485
gnu: r-assertthat: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-assertthat): Update to 0.2.0.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus 2219e691bb
gnu: r-rpart: Update to 4.1-11. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-11.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus b3360e09a7
gnu: r-mass: Update to 7.3-47. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-47.
 2017-04-22 23:30:35 +02:00
Ricardo Wurmus 4d76947e50
gnu: r-boot: Update to 1.3-19. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-19.
 2017-04-22 23:30:35 +02:00
Ricardo Wurmus 5ece8321af
gnu: r-curl: Update to 2.5. 
* gnu/packages/web.scm (r-curl): Update to 2.5.
 2017-04-22 23:30:35 +02:00
Ricardo Wurmus 1a84edeb0b
gnu: r-seqminer: Update to 5.9. 
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 5.9.
 2017-04-22 23:30:31 +02:00
Ricardo Wurmus f8fe0e9db7
gnu: Add nss-pam-ldapd. 
* gnu/packages/openldap.scm (nss-pam-ldapd): New variable.
 2017-04-22 23:10:49 +02:00
Manolis Ragkousis cc4faa35f8
gnu: Add the Hurd. 
* gnu/packages/hurd.scm (hurd): New variable.
* gnu/packages/patches/hurd-fix-eth-multiplexer-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-04-22 23:01:30 +03:00
Manolis Ragkousis b005a37ac2
gnu: hurd: Add hurd-source-url procedure. 
* gnu/packages/hurd.scm (hurd-source-url): New procedure.
  (hurd-headers)[source]: Adjust accordingly.
 2017-04-22 23:01:24 +03:00
Danny Milosavljevic 71d0420202
system: Rename operating-system-parameters-file to operating-system-boot-parameters-file. 
* gnu/system.scm (operating-system-parameters-file): Rename to ...
(operating-system-boot-parameters-file): ... this.
(operating-system-directory-base-entries): Adapt call site.
 2017-04-22 20:54:43 +02:00
Danny Milosavljevic af98d25a12
system: Rename operating-system-kernel-arguments to operating-system-user-kernel-arguments. 
* gnu/system.scm (operating-system-kernel-arguments): Rename to ...
(operating-system-user-kernel-arguments): ... this.
(<operating-system>): Adapt accordingly.
(operating-system-bootcfg): Adapt accordingly.
(operating-system-parameters-file): Adapt accordingly.
* gnu/system/vm.scm (system-qemu-image/shared-store-script): Adapt
accordingly.
 2017-04-22 20:54:31 +02:00
Tobias Geerinckx-Rice 10b91ccaaa
gnu: weechat: Update to 1.7.1. 
* gnu/packages/irc.scm (weechat): Update to 1.7.1.
[source, home-page]: Use HTTPS.
 2017-04-22 20:35:50 +02:00
Tobias Geerinckx-Rice d65db1d55d
gnu: weechat: Mention ‘IRC’. 
* gnu/packages/irc.scm (weechat)[description]: Mention the search term
‘IRC’, split into paragraphs, and other small tweaks.
 2017-04-22 20:35:50 +02:00
Kei Kebreau a7086b154f
gnu: hyperrogue: Update to 9.4g. 
* gnu/packages/games.scm (hyperrogue): Update to 9.4g.
 2017-04-22 13:57:55 -04:00
Kei Kebreau 7d873e0c26
gnu: gnuplot: Update to 5.0.6. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.6.
 2017-04-22 13:33:09 -04:00
Ludovic Courtès 25a49294ca
cache: Work around 'time-monotonic' bug in Guile 2.2.2. 
* guix/cache.scm (time-monotonic) [guile-2.2]: New variable.
* tests/cache.scm (time-monotonic) [guile-2.2]: Likewise.
* guix/build/download.scm (time-monotonic) [guile-2.2]: Adjust comment:
it's a 2.2.2 bug.
 2017-04-22 14:42:15 +02:00
Ludovic Courtès 8a8e2d2ed5
derivations: Adjust builder encoding test. 
This is a followup to 9231ef12f2.

* tests/derivations.scm ("build-expression->derivation and builder
encoding"): Set '%default-port-encoding' to "UTF-8".
 2017-04-22 14:07:46 +02:00
Marius Bakke 611924eb87
gnu: xf86-video-nouveau: Update to 1.0.15. 
* gnu/packages/xorg.scm (xf86-video-nouveau): Update to 1.0.15.
[home-page]: Use HTTPS.
 2017-04-22 12:13:36 +02:00
Marius Bakke 1f8c4c53db
gnu: emacs: Update to 25.2. 
* gnu/packages/emacs.scm (emacs, emacs-minimal, emacs-no-x,
emacs-no-x-toolkit): Update to 25.2.
 2017-04-22 12:13:36 +02:00
Marius Bakke fa8a585e0f
gnu: xdg-utils: Update to 1.1.1. 
* gnu/packages/freedesktop.scm (xdg-utils): Update to 1.1.1.
[source]: Adjust file name.
[native-inputs]: Add DOCBOOK-XSL, DOCBOOK-XML-4.1.2, LIBXSLT, W3M and XMLTO.
[arguments]<#:phases>: Add 'patch-hardcoded-paths' and 'locate-catalog-files'
phases. New parameter.
[home-page]: Update to new home.
 2017-04-22 12:13:36 +02:00
Mark H Weaver 1efcd3d672
gnu: linux-libre: Update to 4.10.12. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.12.
(%linux-libre-hash): Update hash.
 2017-04-21 22:06:10 -04:00
Mark H Weaver 7b7770f205
gnu: linux-libre@4.9: Update to 4.9.24. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.24.
 2017-04-21 22:05:33 -04:00
Mark H Weaver bd5424d487
gnu: linux-libre@4.4: Update to 4.4.63. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.63.
 2017-04-21 22:04:48 -04:00
Ludovic Courtès befbaebf72
gnu: Add guile2.2-ssh. 
* gnu/packages/ssh.scm (guile2.2-ssh): New variable.
 2017-04-22 01:25:22 +02:00
Ludovic Courtès 1fe958d62a
download: Work around Guile 2.2 bug with 'time-monotonic' objects. 
* guix/build/download.scm (time-monotonic) [guile-2.2]: New variable.
 2017-04-22 01:25:22 +02:00
Ricardo Wurmus 6ef94ecbaa
gnu: Add policycoreutils. 
* gnu/packages/selinux.scm (policycoreutils): New variable.
 2017-04-22 00:36:43 +02:00
Ricardo Wurmus 41da8dbe12
gnu: Add python-setools. 
* gnu/packages/selinux.scm (python-setools): New variable.
 2017-04-22 00:36:43 +02:00
Ricardo Wurmus 42c939a859
gnu: Add python-ipy. 
* gnu/packages/networking.scm (python-ipy): New variable.
 2017-04-22 00:36:43 +02:00
Ricardo Wurmus d7e2d273e1
gnu: Add python-sepolgen. 
* gnu/packages/selinux.scm (python-sepolgen): New variable.
 2017-04-22 00:36:43 +02:00
Ricardo Wurmus c837027d38
gnu: Add secilc. 
* gnu/packages/selinux.scm (secilc): New variable.
 2017-04-22 00:36:43 +02:00
Ricardo Wurmus 32be66011a
gnu: Add libsemanage. 
* gnu/packages/selinux.scm (libsemanage): New variable.
 2017-04-22 00:36:42 +02:00
Ricardo Wurmus 4724d7297f
gnu: Add libselinux. 
* gnu/packages/selinux.scm (libselinux): New variable.
 2017-04-22 00:36:42 +02:00
Ricardo Wurmus 66af08fb5a
gnu: Add checkpolicy. 
* gnu/packages/selinux.scm (checkpolicy): New variable.
 2017-04-22 00:36:42 +02:00
Ricardo Wurmus f269ad2536
gnu: Add libsepol. 
* gnu/packages/selinux.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2017-04-22 00:36:42 +02:00
Ricardo Wurmus ba85174035
gnu: ibus-libpinyin: Update to 1.9.0. 
* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.9.0.
 2017-04-22 00:09:27 +02:00
Ricardo Wurmus 49d49b69f8
gnu: libpinyin: Adjust indentation. 
* gnu/packages/ibus.scm (libpinyin)[arguments]: Adjust indentation.
 2017-04-22 00:09:26 +02:00
Ricardo Wurmus 31e619385a
gnu: libpinyin: Update to 2.0.0. 
* gnu/packages/ibus.scm (libpinyin): Update to 2.0.0.
 2017-04-22 00:09:26 +02:00
Leo Famulari 04b9067991
gnu: Remove unused patches. 
* gnu/packages/patches/gcc-libiberty-printf-decl.patch,
gnu/packages/patches/grub-CVE-2015-8370.patch,
gnu/packages/patches/grub-freetype.patch,
gnu/packages/patches/grub-gets-undeclared.patch,
gnu/packages/patches/guile-arm-fixes.patch,
gnu/packages/patches/mplayer2-theora-fix.patch,
gnu/packages/patches/soprano-find-clucene.patch,
gnu/packages/patches/util-linux-CVE-2017-2616.patch,
gnu/packages/patches/xf86-video-intel-compat-api.patch,
gnu/packages/patches/xf86-video-intel-glibc-2.20.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2017-04-21 18:03:04 -04:00
Ludovic Courtès 904c6c42eb
tests: Adjust to the addition of a new Coreutils version. 
* tests/scripts-build.scm ("options->transformation, with-input"): Use
'specification->package' rather than refer to Coreutils by its
variable.  This is a followup to e162050dfc.
 2017-04-21 22:53:59 +02:00
Ludovic Courtès 9231ef12f2
derivations: Restore UTF-8 encoding of build scripts. 
Reported by Mark H Weaver <mhw@netris.org>
at <https://lists.gnu.org/archive/html/guix-devel/2017-04/msg00457.html>.

* guix/derivations.scm (build-expression->derivation): Use a string
output port for the expression.  This reverts part of
2dce88d5bb.
* tests/derivations.scm ("build-expression->derivation and builder
encoding"): New test.
 2017-04-21 22:45:29 +02:00
Leo Famulari 0a3bed8819
gnu: libsodium: Update to 1.0.12. 
* gnu/packages/crypto.scm (libsodium): Update to 1.0.12.
 2017-04-21 16:37:37 -04:00