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Author SHA1 Message Date
Jeremiah@pdp10.guru e7041c8ef8
gnu: python: Allow building on low-memory systems. 
* gnu/packages/python.scm (python-3.7)[source]: Delete memory-intensive test.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-06-20 23:56:59 +02:00
Marius Bakke fc9e5973d6
gnu: expat: Update to 2.2.7. 
* gnu/packages/xml.scm (expat): Update to 2.2.7.
[source](uri): Use XZ compressed archive.
 2019-06-20 23:56:59 +02:00
Marius Bakke d0828b0757
gnu: xorgproto: Update to 2019.1. 
* gnu/packages/xorg.scm (xorgproto): Update to 2019.1.
 2019-06-20 23:56:59 +02:00
Marius Bakke 78b036ddce
gnu: libxi: Update to 1.7.10. 
* gnu/packages/xorg.scm (libxi): Update to 1.7.10.
 2019-06-20 23:56:58 +02:00
Marius Bakke 8449cc133a
gnu: isl: Update to 0.21. 
* gnu/packages/gcc.scm (isl): Update to 0.21.
 2019-06-20 23:56:58 +02:00
Marius Bakke 9f1da6ced3
gnu: isl: Fix fallback URL. 
* gnu/packages/gcc.scm (isl, isl-0.18, isl-0.11)[source](uri): Use '.bz2' tarball.
 2019-06-20 23:56:58 +02:00
Marius Bakke 1bd364364d
gnu: ncurses: Update to 6.1-20190909. 
* gnu/packages/ncurses.scm (ncurses): Update to 6.1-20190609.
[arguments]: Reinstate 'apply-rollup-patch' phase.  Move
'remove-unneeded-shebang' phase later to prevent conflict with patch.
[native-inputs]: Add "rollup-patch" origin.
 2019-06-20 23:56:58 +02:00
Marius Bakke 2b5e412b30
gnu: commencement: Return #t from all phases. 
While at it, remove useless (and ...) indirections, because the procedures
never return #f anyway: instead they would raise an exception upon failure.

* gnu/packages/commencement.scm (mes-boot, tcc-boot0, tcc-boot,
diffutils-mesboot, binutils-mesboot0, gcc-core-mesboot, gcc-mesboot0,
glibc-headers-mesboot, glibc-mesboot, gnu-make-boot0): Return #t from phases
and remove (and ...) blocks.
 2019-06-20 23:56:58 +02:00
Marius Bakke 70530036b8
gnu: meson: Update to 0.51.0. 
* gnu/packages/build-tools.scm (meson): Update to 0.51.0.
 2019-06-20 23:56:57 +02:00
Marius Bakke ac3842ef3e
gnu: util-linux: Update to 2.34. 
* gnu/packages/linux.scm (util-linux): Update to 2.34.
 2019-06-20 23:56:57 +02:00
Marius Bakke 74c1c8daf5
gnu: libx11: Update to 1.6.8. 
* gnu/packages/xorg.scm (libx11): Update to 1.6.8.
 2019-06-20 23:56:57 +02:00
Marius Bakke c69959f054
gnu: Replace uses of 'cmake' with 'cmake-minimal'. 
This follows up commit 2f33a7321e which
introduced a new CMAKE-MINIMAL variant for use in package inputs.

* gnu/packages/databases.scm (python-pyarrow)[native-inputs]: Replace CMAKE
with CMAKE-MINIMAL.
* gnu/packages/emacs-xyz.scm (emacs-scel)[native-inputs]: Likewise.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[native-inputs]: Likewise.
* gnu/packages/games.scm (0ad, the-butterfly-effect)[native-inputs]: Likewise.
* gnu/packages/gnome.scm (deja-dup)[native-inputs]: Likewise.
* gnu/packages/ibus.scm (ibus-rime)[native-inputs]: Likewise.
* gnu/packages/rust.scm (rust-1.19)[native-inputs]: Likewise.
* gnu/packages/simulation.scm (fenics)[native-inputs]: Likewise.
* gnu/packages/squirrel.scm (squirrel)[native-inputs]: Likewise.
* gnu/packages/video.scm (handbrake)[native-inputs]: Likewise.
* gnu/packages/virtualization.scm (xen)[native-inputs]: Likewise.
* gnu/packages/vulkan.scm (shaderc)[native-inputs]: Likewise.
 2019-06-20 23:56:57 +02:00
Marius Bakke a9a78d8bfb
gnu: dbus: Update to 1.12.16. 
* gnu/packages/patches/dbus-CVE-2019-12749.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/glib.scm (dbus): Update to 1.12.16.
[replacement]: Remove.
(dbus/fixed): Remove variable.
 2019-06-20 23:40:52 +02:00
Marius Bakke 6cb1ef9ea2
Merge branch 'staging' into core-updates 2019-06-20 23:38:56 +02:00
Marius Bakke 010689e706
gnu: python-sphinx: Update to 2.1.2. 
* gnu/packages/sphinx.scm (python-sphinx): Update to 2.1.2.
 2019-06-20 23:19:09 +02:00
Marius Bakke 651478aa18
Merge branch 'master' into staging 2019-06-20 23:08:16 +02:00
Marius Bakke 9a2e5fe5fd
gnu: ungoogled-chromium: Disable parallel build. 
* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Set
  #:parallel-build? #f.  Adjust 'build' phase to account for it.
 2019-06-20 22:49:32 +02:00
Marius Bakke 0605d939a9
gnu: samba: Update to 4.10.5 [fixes CVE-2019-12435, CVE-2019-12436]. 
* gnu/packages/samba.scm (samba): Update to 4.10.5.
 2019-06-20 22:49:32 +02:00
Marius Bakke cee835897b
gnu: ungoogled-chromium: Update to 75.0.3770.100-0.5d8abc3. 
* gnu/packages/chromium.scm (%chromium-version): Set to 75.0.3770.100.
(%chromium-origin): Update hash.
 2019-06-20 22:49:32 +02:00
Marius Bakke e4386b334a
gnu: openh264: Update to 2.0.0. 
* gnu/packages/video.scm (openh264): Update to 2.0.0.
[source](uri): Adjust file name.
 2019-06-20 22:49:32 +02:00
Alex Griffin 3df7b15e6c
gnu: ungoogled-chromium: Install icons. 
* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Install icons.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-06-20 22:49:32 +02:00
Marius Bakke b549a05353
gnu: Use HTTPS for sphinx-doc.org. 
* gnu/packages/sphinx.scm (python-sphinx,
python-sphinxcontrib-websupport)[home-page]: Use HTTPS.
 2019-06-20 22:49:31 +02:00
Marius Bakke bd9d72067e
gnu: python-unidecode: Update to 1.1.0. 
* gnu/packages/python-xyz.scm (python-unidecode): Update to 1.1.0.
 2019-06-20 22:49:31 +02:00
Marius Bakke 377bd155ea
gnu: dbus: Fix CVE-2019-12749. 
* gnu/packages/patches/dbus-CVE-2019-12749.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/glib.scm (dbus)[replacement]: New field.
(dbus/fixed): New variable.
 2019-06-20 22:49:31 +02:00
Ricardo Wurmus 28618b05f0
gnu: pigx-rnaseq: Update to 0.0.7. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.7.
[inputs]: Add coreutils and sed.
 2019-06-20 22:29:43 +02:00
Andreas Enge eacf29835d
gnu: Add iml. 
* gnu/packages/algebra.scm (iml): New variable.
 2019-06-20 17:36:39 +02:00
Andreas Enge 264334716f
gnu: Add ppl. 
* gnu/packages/maths.scm (ppl): New variable.
 2019-06-20 16:46:37 +02:00
Kristofer Buffington ace8e269a4
services: opensmtpd: Extend the PAM service. 
* gnu/services/mail.scm (%opensmtpd-pam-services): New variable.
(opensmtpd-service-type)[extensions]: Add it, extending
PAM-ROOT-SERVICE-TYPE.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-06-20 15:54:51 +02:00
Ricardo Wurmus 30adfd3600
gnu: ngs-sdk: Update to 2.9.6. 
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.6.
 2019-06-20 14:33:57 +02:00
Ricardo Wurmus 20874b7044
gnu: sra-tools: Update to 2.9.6. 
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.6.
 2019-06-20 14:33:57 +02:00
Ricardo Wurmus 7cb44fb571
gnu: ncbi-vdb: Update to 2.9.6. 
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.6.
[arguments]: Pass HAVE_HDF5 make flag; add build phase "patch-krypto-flags".
 2019-06-20 14:33:57 +02:00
Ludovic Courtès c050f18700
gnu: guile: Add 2.2.5. 
* gnu/packages/guile.scm (guile-2.2.5): New variable.
 2019-06-20 14:07:01 +02:00
Ricardo Wurmus becb9cbfe1
gnu: python-jupyter-console: Update to 6.0.0. 
* gnu/packages/python-xyz.scm (python-jupyter-console): Update to 6.0.0.
[arguments]: Enable tests.
[propagated-inputs]: Replace python-prompt-toolkit-1 with
python-prompt-toolkit.
 2019-06-20 13:14:16 +02:00
Ricardo Wurmus 8e590c8153
gnu: python2-jupyter-console: Split from python-jupyter-console. 
* gnu/packages/python-xyz.scm (python2-jupyter-console): Implement without
package-with-python2.
 2019-06-20 13:14:16 +02:00
Nicolas Goaziou e2ab228b46
Revert "gnu: Add libgd." 
This reverts commit 059e4c9a15.
 2019-06-20 12:39:21 +02:00
Andreas Enge 197ebc36be
gnu: Add lrcalc. 
* gnu/packages/algebra.scm (lrcalc): New variable.
 2019-06-20 12:21:11 +02:00
Andreas Enge 66c67e7ba1
gnu: Add eclib. 
* gnu/packages/algebra.scm (eclib): New variable.
 2019-06-20 12:21:04 +02:00
Andreas Enge 6cbedbd2f2
gnu: Add m4rie. 
* gnu/packages/algebra.scm (m4rie): New variable.
 2019-06-20 12:20:11 +02:00
Josh Holland 9553a41dbe
gnu: weechat: update to 2.5 
* gnu/packages/irc.scm (weechat): update to 2.5

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
 2019-06-20 11:55:09 +02:00
Nicolas Goaziou 25cbaa9e70
gnu: Add python-fpylll. 
* gnu/packages/algebra.scm (python-fpylll): New variable.
 2019-06-20 11:07:12 +02:00
Nicolas Goaziou 1de48e8f8a
gnu: fplll: Update to 5.2.1. 
* gnu/packages/algebra.scm (fplll): Update to 5.2.1.
[source]: Use Github tagged release: the original tarball no longer exists.
[native-inputs]: Add Autoconf and al.
[homepage]: Update it, the previous one no longer exists.
[description]: Expound description.
 2019-06-20 11:03:37 +02:00
Tobias Geerinckx-Rice f7dbf186b4
services: Fix typo in (gnu services mail) exports. 
* gnu/services/mail.scm (define-module):
Re-spell ‘%default-imap4d-config-file’.
 2019-06-20 10:43:25 +02:00
Nicolas Goaziou 75a73bb024
gnu: Add symmetrica. 
* gnu/packages/algebra.scm (symmetrica): New variable.
* gnu/packages/patches/symmetrica-bruch.patch:
* gnu/packages/patches/symmetrica-int32.patch:
* gnu/packages/patches/symmetrica-return_values.patch:
* gnu/packages/patches/symmetrica-sort_sum_rename.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add patches.
 2019-06-20 10:19:12 +02:00
Alex Griffin a42cb6f1f1
gnu: zathura: Install icons. 
* gnu/packages/pdf.scm (zathura)[native-inputs]: Add librsvg to build and
install the application icons.

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
 2019-06-20 10:10:31 +02:00
Nicolas Goaziou 059e4c9a15
gnu: Add libgd. 
* gnu/packages/image.scm (libgd): New variable.
 2019-06-20 10:09:17 +02:00
Nicolas Goaziou ab398380eb
gnu: Move ratpoints into a different module. 
* gnu/packages/maths.scm (ratpoints): Move...
* gnu/packages/algebra.scm: ...here.
 2019-06-20 09:20:29 +02:00
Meiyo Peng 5543d3bb09
gnu: spdlog: Clarify license. 
* gnu/packages/logging.scm (spdlog): Clarify license of the bundled fmt
  library.

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
 2019-06-20 05:38:58 +02:00
Tobias Geerinckx-Rice c5c51bda0b
gnu: bind: Update to 9.14.3 [fixes CVE-2019-6471]. 
* gnu/packages/dns.scm (isc-bind): Update to 9.14.3.
 2019-06-20 00:28:14 +02:00
Andreas Enge 80ee7c4a48
gnu: zn_poly: Rename to zn-poly, according to our naming conventions. 
Reported by Nicolas Goaziou <mail@nicolasgoaziou.fr>.

This is a follow-up to commit 01822e3ebf.
* gnu/packages/sagemath.scm (zn_poly): Rename to...
* gnu/packages/sagemath.scm (zn-poly): ...this.
 2019-06-20 00:03:46 +02:00
Andreas Enge a1dcaacb7b
gnu: Add brial. 
* gnu/packages/sagemath.scm (brial): New variable.
 2019-06-19 23:57:49 +02:00