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7559 Commits

Author SHA1 Message Date
Ricardo Wurmus e761beb9a9 gnu: Add r-org-mm-eg-db. 
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): New variable.
 2016-02-24 17:26:39 +01:00
Ricardo Wurmus 16c53a1e26 gnu: Add r-org-dm-eg-db. 
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): New variable.
 2016-02-24 17:26:39 +01:00
Ricardo Wurmus fefedf98cb gnu: Add r-org-ce-eg-db. 
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): New variable.
 2016-02-24 17:26:39 +01:00
Ricardo Wurmus 486da49143 gnu: Add r-org-hs-eg-db. 
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
 2016-02-24 17:26:39 +01:00
Alex Kost 6caa4dfa37 Do not check package freshness during upgrade. 
Fixes <http://bugs.gnu.org/22740>.
Reported by Andreas Enge <andreas@enge.fr>.

* gnu/packages.scm (waiting, ftp-open*, check-package-freshness): Remove.
* guix/scripts/package.scm (options->installable): Adjust accordingly.
* emacs/guix-main.scm (package->manifest-entry*): Likewise.
 2016-02-24 18:24:16 +03:00
Ludovic Courtès da35acf91d gnu: lsh: lshd now supports X11 forwarding. 
Reported by myglc2 <myglc2@gmail.com>.

* gnu/packages/lsh.scm (lsh)[inputs]: Add XAUTH.
[arguments]: Modify 'XAUTH_PROGRAM' macro in 'server_x11.c'.
 2016-02-24 13:11:50 +01:00
Ludovic Courtès 03b93ed70e gnu: lsh: Use 'modify-phases'. 
* gnu/packages/lsh.scm (lsh)[arguments]: Use 'modify-phases' instead of
'alist-cons-before'.
 2016-02-24 13:11:50 +01:00
Andy Wingo ea84bd88da gnu: services: Install policies for polkit service. 
* gnu/services/desktop.scm (polkit-etc-files): Add the polkit package
  itself to the list of packages to scan for .policy files.  This add
  support for pkexec.
 2016-02-24 10:16:54 +01:00
Efraim Flashner ebde7c7a9b mplayer: Use 'modify-phases'. 
* gnu/packages/video.scm (mplayer)[arguments]: Use 'modify-phases'.
[source]: Use https.
[home-page]: Use https.
 2016-02-24 10:33:05 +02:00
Efraim Flashner 778a6a8bf0 gnu: mplayer: Add codecs. 
* gnu/packages/video.scm (mplayer)[inputs]: Add libass, libmpeg2,
  libvdpau, libx264, opus.
 2016-02-24 09:43:51 +02:00
Efraim Flashner dec3e015eb gnu: dropbear: Update to 2015.71. 
* gnu/packages/ssh.scm (dropbear): Update to 2015.71.
 2016-02-24 09:18:14 +02:00
David Thompson dd90ed892a gnu: guile-next: Set correct native search paths. 
* gnu/packages/guile.scm (guile-next): Use the "2.2" directory for the
  load paths.
 2016-02-23 19:39:56 -05:00
Ludovic Courtès f2d8faff04 services: herd: Add missing newlines in error messages. 
* gnu/services/herd.scm (report-action-error): Add missing newlines in
messages.
 2016-02-23 13:03:23 +01:00
Andreas Enge 5a179844e7 gnu: Add xfce4-xkb-plugin. 
* gnu/packages/xfce.scm (xfce4-xkb-plugin): New variable.
  (xfce)[propagated-inputs]: Add it.
 2016-02-23 11:53:03 +01:00
Leo Famulari 8758efe0b0 gnu: telepathy-logger: Disable parallel tests. 
* gnu/packages/freedesktop.scm (telepathy-logger)[arguments]: Disable parallel
tests.
 2016-02-23 01:53:47 -05:00
Roel Janssen c1fc7a67e4 gnu: Add rdmd. 
* gnu/packages/ldc.scm (rdmd): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-23 01:27:19 -05:00
Leo Famulari e9f68a647d gnu: modem-manager: Use HTTPS URL. 
* gnu/packages/freedesktop.scm (modem-manager)[source]: Use HTTPS URL.
 2016-02-23 00:15:05 -05:00
Leo Famulari fae58fe1d1 gnu: mpd: Update to 0.19.12. 
* gnu/packages/mpd.scm (mpd): Update t0 0.19.12.
 2016-02-22 20:16:25 -05:00
Leo Famulari a4c7c57c2c gnu: ncmpcpp: Udate to 0.7.3. 
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.7.3.
[inputs]: Add icu4c.
 2016-02-22 20:16:25 -05:00
Leo Famulari 9913c78a09 gnu: ncmpcpp: Use 'modify-phases'. 
* gnu/packages/mpd.scm (ncmpcpp)[arguments]: Use 'modify-phases'.
 2016-02-22 20:16:25 -05:00
Christopher Allan Webber 944d2b17b5 vm: Only pass "-enable-kvm" to qemu if /dev/kvm is present. 
Fixes <http://bugs.gnu.org/22633>.

* gnu/build/vm.scm (load-in-linux-vm): Only pass "-enable-kvm" flag to qemu
  if "/dev/kvm" is present.
* gnu/system/vm.scm (common-kvm-options): Same as above.
 2016-02-22 13:28:58 -08:00
Ludovic Courtès 8b16a5e199 gnu: pkg-config: Add non-HTTPS alternate URL. 
* gnu/packages/pkg-config.scm (%pkg-config)[source]: Add non-HTTPS URL.
 2016-02-22 22:11:37 +01:00
Andreas Enge 3297deedd1 gnu: Remove python2-pyqt-4. 
* gnu/packages/qt.scm (python2-pyqt-4): Delete variable. It depends on Qt 4,
  which does not receive security updates any more.
 2016-02-22 21:33:29 +01:00
Andreas Enge dbbb45dd73 gnu: Remove KDE 4. 
* gnu/packages/kde.scm (qjson): Move from here...
* gnu/packages/qt.scm (qjson): ...to here.
* gnu/packages/pumpio.scm: Drop inclusion of (gnu packages kde).
* gnu/packages/kde.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Unregister it.
* gnu/packages/rdf.scm (soprano): Delete variable.

KDE 4 relies on Qt 4, which does not receive security updates any more.
 2016-02-22 21:30:56 +01:00
Efraim Flashner 5ad87e5bb5 gnu: python-patsy: Define 'python2-variant'. 
* gnu/packages/statistics.scm (python-patsy)[properties]: New field.
(python2-patsy): Use 'strip-python2-variant'.
 2016-02-22 21:59:02 +02:00
Efraim Flashner f4cd2ceabd gnu: python-patsy: Update to 0.4.1. 
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Update to 0.4.1.
 2016-02-22 21:59:02 +02:00
Mark H Weaver 5879f0d649 gnu: qemu: Add fixes for CVE-2015-8619, CVE-2016-1981, CVE-2016-2197. 
* gnu/packages/patches/qemu-CVE-2015-8619.patch,
  gnu/packages/patches/qemu-CVE-2016-1981.patch,
  gnu/packages/patches/qemu-CVE-2016-2197.patch,
  gnu/packages/patches/qemu-usb-ehci-oob-read.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
 2016-02-22 10:26:22 -05:00
Rene Saavedra b784b1a9ea gnu: Add gnome-screenshot. 
* gnu/packages/gnome.scm (gnome-screenshot): New variable.
 2016-02-22 19:57:35 +08:00
Roel Janssen 8b15f42c73 gnu: libotf: Use mirror:// URL. 
* gnu/packages/fontutils.scm (libotf): Use mirror://savannah URL.
 2016-02-22 19:57:35 +08:00
Efraim Flashner 066651d412 gnu: c-ares: Update to 1.11.0. 
* gnu/packages/adns.scm (c-ares): Update to 1.11.0.
 2016-02-22 10:43:17 +02:00
Leo Famulari 1034331a11 gnu: parallel: Update to 20160122. 
* gnu/packages/parallel.scm (parallel): Update to 20160122.
 2016-02-22 02:31:38 -05:00
Leo Famulari 50a7963aeb gnu: python-acme: Generate and install documentation. 
* gnu/packages/tls.scm (acme)[arguments]: Add 'docs' phase.
[native-inputs]: Add python-sphinx, python-sphinxcontrib-programoutput,
python-sphinx-rtd-theme, python-setuptools, texinfo.
 2016-02-22 00:40:25 -05:00
Leo Famulari f9263d9a90 gnu: letsencrypt: Generate and install documentation. 
* gnu/packages/tls.scm (letsencrypt)[arguments]: Add 'docs' phase.
[native-inputs]: Add python2-sphinx, python2-sphinx-rtd-theme,
python2-sphinx-repoze-autointerface,
python2-sphinxcontrib-programoutput, texinfo.
 2016-02-22 00:40:25 -05:00
Leo Famulari 548d716539 gnu: Add python-sphinx-repoze-autointerface. 
* gnu/packages/python.scm (python-sphinx-repoze-autointerface,
python2-sphinx-repoze-autointerface): New variables.
 2016-02-22 00:40:25 -05:00
Leo Famulari 3276517cdc gnu: Add python-sphinxcontrib-programoutput. 
* gnu/packages/python.scm (python-sphinxcontrib-programoutput,
python2-sphinxcontrib-programoutput): New variables.
 2016-02-22 00:40:25 -05:00
Christopher Allan Webber 2de98febb3 gnu: python-apipkg: Remove unzip dependency. 
Unzip was never used for this package.

* gnu/packages/python.scm (python-apipkg): Remove unzip dependency.
 2016-02-21 19:02:26 -08:00
Christopher Allan Webber 0c3b90d478 gnu: Add python-editor. 
* gnu/packages/python.scm (python-editor, python2-editor): New variables.
 2016-02-21 19:01:16 -08:00
Christopher Allan Webber 97e32948ea gnu: Add python-translitcodec. 
* gnu/packages/python.scm (python-translitcodec, python2-translitcodec):
  New variables.
 2016-02-21 19:01:16 -08:00
Christopher Allan Webber 22df6419f8 gnu: Add python-celery. 
* gnu/packages/python.scm (python-celery, python2-celery): New variables.
 2016-02-21 19:01:16 -08:00
Christopher Allan Webber b6f0b9fb68 gnu: Add python-billiard. 
* gnu/packages/python.scm (python-billiard, python2-billiard):
  New variables.
 2016-02-21 19:01:16 -08:00
Christopher Allan Webber 7d38730507 gnu: Add python-kombu. 
* gnu/packages/python.scm (python-kombu, python2-kombu): New variables.
 2016-02-21 19:01:16 -08:00
Christopher Allan Webber 8dfceab779 gnu: Add python-amqp. 
* gnu/packages/python.scm (python-amqp, python2-amqp): New variables.
 2016-02-21 19:01:13 -08:00
Christopher Allan Webber 4cb122cd8d gnu: Add python-anyjson. 
* gnu/packages/python.scm (python-anyjson, python2-anyjson): New variables.
 2016-02-21 19:00:32 -08:00
Christopher Allan Webber aa6313d699 gnu: Add python-webtest. 
* gnu/packages/python.scm (python-webtest, python2-webtest):
  New variables.
 2016-02-21 18:59:39 -08:00
Christopher Allan Webber 1cf536521d gnu: Add python-pyquery. 
* gnu/packages/python.scm (python-pyquery, python2-pyquery): New variables.
 2016-02-21 18:59:39 -08:00
Christopher Allan Webber bb7518b1e8 gnu: Add python-pastedeploy. 
* gnu/packages/python.scm (python-pastedeploy, python2-pastedeploy):
  New variables.
 2016-02-21 18:59:39 -08:00
Christopher Allan Webber 778a284be5 gnu: Add python-wsgiproxy2. 
* gnu/packages/python.scm (python-wsgiproxy2, python2-wsgiproxy2):
  New variables.
 2016-02-21 18:59:39 -08:00
Christopher Allan Webber ae00a41feb gnu: Add python-waitress. 
* gnu/packages/python.scm (python-waitress, python2-waitress): New variables.
 2016-02-21 18:59:39 -08:00
Christopher Allan Webber b32a1e47a9 gnu: Add python-beautifulsoup4. 
* gnu/packages/python.scm (python-beautifulsoup4, python2-beautifulsoup4):
  New variables.
 2016-02-21 18:59:34 -08:00
Christopher Allan Webber 8fa58fc9a1 gnu: Add python-pytest-xdist. 
* gnu/packages/python.scm (python-pytest-xdist, python2-pytest-xdist):
  New variables.
 2016-02-21 18:59:30 -08:00