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49155 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice 2608d3ea5b
gnu: perl-async-interrupt: Update to 1.25. 
* gnu/packages/perl.scm (perl-async-interrupt): Update to 1.25.
 2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice 0be9038c95
gnu: maxflow: Use HTTPS home page. 
* gnu/packages/maths.scm (maxflow)[home-page]: Use HTTPS.
 2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice bdc63012d1
gnu: licensecheck: Update to 3.0.37. 
* gnu/packages/license.scm (licensecheck): Update to 3.0.37.
 2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice aa714a06db
gnu: perl-regexp-pattern-license: Update to 3.1.94. 
* gnu/packages/license.scm (perl-regexp-pattern-license): Update to 3.1.94.
 2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice 1c8d6d6d7a
gnu: qucs-s: Update to 0.0.21. 
* gnu/packages/engineering.scm (qucs-s): Update to 0.0.21.
 2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice 0af12a1367
gnu: maxflow: Correct version to 3.0.5. 
This won't be picked up by ‘guix package -u’, but the code is identical
anyway.  By changing this now, fewer installations will fail to upgrade
at all if upstream ever release a new <3.4.

* gnu/packages/maths.scm (maxflow)[version]: Change to 3.0.5.
[source]: Use version tag instead of raw matching commit.
 2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice 2dc0a6cf36
gnu: maxflow: Use GIT-FILE-NAME. 
* gnu/packages/maths.scm (maxflow)[source]: Use GIT-FILE-NAME.
 2019-10-08 05:29:28 +02:00
Tobias Geerinckx-Rice 248f218e44
gnu: lynis: Update to 2.7.5. 
* gnu/packages/admin.scm (lynis): Update to 2.7.5.
 2019-10-08 05:29:28 +02:00
Eric Bavier edaa616736
gnu: ncmpc: Fix manual install. 
The default manual installation directory was fixed upstream in version 0.34.

* gnu/packages/mpd.scm (ncmpc)[arguments]: Remove #:configure-flags.
 2019-10-07 19:51:08 -05:00
Arun Isaac 4cced9895e
gnu: emacs-linum-relative: Update to 0.6. 
* gnu/packages/emacs-xyz.scm (emacs-linum-relative): Update to 0.6.
 2019-10-07 21:19:41 +05:30
Ludovic Courtès 4d8d2fbaf3
Merge branch 'master' into core-updates 2019-10-07 17:06:13 +02:00
Ricardo Wurmus fa984fa678
gnu: jack-2: Update to 1.9.13. 
* gnu/packages/audio.scm (jack-2): Update to 1.9.13.
[arguments]: Don't build with python-2.
[inputs]: Replace python2-dbus with python-dbus.
 2019-10-07 16:37:01 +02:00
Pierre Neidhardt fa4bbd9f34
gnu: Add trivial-macroexpand-all. 
* gnu/packages/lisp.scm (cl-trivial-macroexpand-all,
  ecl-trivial-macroexpand-all, sbcl-trivial-macroexpand-all): New variables.
 2019-10-07 13:50:07 +02:00
Pierre Neidhardt c6dd9cf7ff
gnu: Add trivial-file-size. 
* gnu/packages/lisp.scm (cl-trivial-file-size, ecl-trivial-file-size,
  sbcl-trivial-file-size): New variables.
 2019-10-07 13:49:42 +02:00
Pierre Neidhardt 003a714e7e
gnu: Add global-vars. 
* gnu/packages/lisp.scm (cl-global-vars, ecl-global-vars, sbcl-global-vars):
  New variables.
 2019-10-07 13:49:28 +02:00
Pierre Neidhardt 3658db3fd7
gnu: Add string-case. 
* gnu/packages/lisp.scm (cl-string-case, ecl-string-case, sbcl-string-case):
  New variables.
 2019-10-07 13:48:23 +02:00
Pierre Neidhardt 6fdb5b7947
gnu: Add cl-fare-quasiquote-extras. 
* gnu/packages/lisp.scm (cl-fare-quasiquote-extras): New variable.
 2019-10-07 13:48:00 +02:00
Pierre Neidhardt 7b9cb9c01c
gnu: Add cl-fare-quasiquote-readtable. 
* gnu/packages/lisp.scm (cl-fare-quasiquote-readtable): New variable.
 2019-10-07 13:47:46 +02:00
Pierre Neidhardt 06e2da719e
gnu: Add fare-quasiquote-optima. 
* gnu/packages/lisp.scm (cl-fare-quasiquote-optima,
  sbcl-fare-quasiquote-optima): New variables.
 2019-10-07 13:46:55 +02:00
Pierre Neidhardt 7baaf7f358
gnu: Add cl-fare-quasiquote. 
* gnu/packages/lisp.scm (cl-fare-quasiquote): New variable.
 2019-10-07 13:46:36 +02:00
Pierre Neidhardt 85747bab82
gnu: sbcl-optima: Fix version number 
* gnu/packages/lisp.scm (sbcl-optima)[version]: It's actually 1.0.
 2019-10-07 13:45:53 +02:00
Vagrant Cascadian 7d82e92071
gnu: linux-libre: Update to 5.3.4. 
* gnu/packages/linux (linux-libre-5.3-version): Update to 5.3.4.
  (deblob-scripts-5.3): Update to 5.3.4.
 2019-10-07 01:55:46 -07:00
Ludovic Courtès 048d21a873
gnu: icedtea-7: Avoid massive rebuild. 
Reported by Efraim Flashner.

* gnu/packages/java.scm (icedtea-7)[arguments]: Change 'lib-path'
definition in 'install-libjvm' to avoid the rebuilds that commit
1b6f99ea53 would otherwise entail.
 2019-10-07 10:44:10 +02:00
Efraim Flashner 7b6a8e23b0
gnu: aria2: Update to 1.35.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.35.0.
[source]: Use new upstream uri. Remove patch.
* gnu/packages/patches/aria2-CVE-2019-3500.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-10-07 11:37:21 +03:00
Ludovic Courtès d3e22bcc11
gnu: icedtea-7: Support non-Intel systems. 
This is a followup to 1b6f99ea53.

* gnu/packages/java.scm (icedtea-7)[arguments]: In 'install-libjvm'
phase, match armhf and aarch64.
[supported-systems]: New field.
 2019-10-07 09:52:31 +02:00
Oleg Pykhalov 4261a9d162
gnu: emacs-mbsync: Update to 0.1.2-4.b62491c. 
* gnu/packages/emacs-xyz.scm (emacs-mbsync): Update to 0.1.2-4.b62491c.
 2019-10-07 10:24:36 +03:00
Brian Leung 4f2a3fbe88
gnu: emacs-evil-nerd-commenter: Update to 3.3.8. 
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.3.8.
 2019-10-07 08:20:50 +02:00
Brian Leung 3f68853557
gnu: emacs-evil-traces: Update to 0.0.1-2.1931e3e. 
* gnu/packages/emacs-xyz.scm (emacs-evil-traces): Update to 0.0.1-2.1931e3e.
 2019-10-07 05:15:55 +02:00
Brian Leung 47467ce75a
gnu: Add emacs-peg. 
* gnu/packages/emacs-xyz.scm (emacs-peg): New variable.
 2019-10-07 04:34:59 +02:00
Brian Leung b44271350b
gnu: emacs-deadgrep: Update to 0.8-2.3fc7ca1. 
* gnu/packages/emacs-xyz.scm (emacs-deadgrep): Update to 0.8-2.3fc7ca1.
 2019-10-07 01:43:37 +02:00
Ricardo Wurmus 326746e14c
gnu: r-variancepartition: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.14.1.
[propagated-inputs]: Add r-biocparallel.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus eb796f53ef
gnu: r-mixomics: Update to 6.8.5. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.5.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 1c2e573302
gnu: r-regioner: Update to 1.16.5. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.5.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 07d0645b6b
gnu: r-backports: Update to 1.1.5. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.5.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus f817005bfe
gnu: r-gargle: Update to 0.4.0. 
* gnu/packages/cran.scm (r-gargle): Update to 0.4.0.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 9b112f4030
gnu: r-rcppparallel: Update to 4.4.4. 
* gnu/packages/cran.scm (r-rcppparallel): Update to 4.4.4.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 770321180f
gnu: r-hdf5r: Update to 1.3.0. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.0.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 2e6ccd6c2d
gnu: r-promises: Update to 1.1.0. 
* gnu/packages/cran.scm (r-promises): Update to 1.1.0.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus ab99236eba
gnu: r-later: Update to 1.0.0. 
* gnu/packages/cran.scm (r-later): Update to 1.0.0.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus b7e7c320a2
gnu: r-maptools: Update to 0.9-8. 
* gnu/packages/cran.scm (r-maptools): Update to 0.9-8.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus ff74344597
gnu: r-htmlwidgets: Update to 1.5. 
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.5.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 82acc94fbf
gnu: r-htmltools: Update to 0.4.0. 
* gnu/packages/cran.scm (r-htmltools): Update to 0.4.0.
[arguments]: Remove field.
[propagated-inputs]: Add r-rlang.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 33651044c6
gnu: r-seurat: Update to 3.1.1. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.1.
[propagated-inputs]: Add r-httr.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 94638cbe77
gnu: r-rsamtools: Update to 2.0.2. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.2.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus 122c1b3ce7
gnu: r-biomart: Update to 2.40.5. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.5.
 2019-10-06 23:08:46 +02:00
Brian Leung d050fdf4c6
gnu: emacs-helm-ag: Fix version. 
* gnu/packages/emacs-xyz.scm (emacs-helm-ag): Fix version.
 2019-10-06 22:08:27 +02:00
Brian Leung cb2197508a
gnu: Add emacs-helm-org. 
* gnu/packages/emacs-xyz.scm (emacs-helm-org): New variable.
 2019-10-06 22:08:27 +02:00
Brian Leung 45d04b2a7d
gnu: emacs-helm: Update to 3.5.0. 
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.5.0.
 2019-10-06 22:08:27 +02:00
Ricardo Wurmus 4722330d68
gnu: nss-pam-ldapd: Update to 0.9.11. 
* gnu/packages/openldap.scm (nss-pam-ldapd): Update to 0.9.11.
[inputs]: Replace python-2 with python.
 2019-10-06 22:07:07 +02:00
Ricardo Wurmus e08902d3cb
Merge branch 'master' into core-updates 2019-10-06 22:02:20 +02:00