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Author SHA1 Message Date
Ricardo Wurmus 43734b4727
gnu: r-ripseeker: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.20.0.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 45bbccf4e7
gnu: r-diffbind: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.8.0.
[propagated-inputs]: Add r-genomicranges, r-ggplot2, and
r-summarizedexperiment.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 72427c721d
gnu: r-regioner: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.12.0.
[propagated-inputs]: Add r-s4vectors.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus 2f5b3d8e90
gnu: r-hpar: Update to 1.22.2. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.22.2.
 2018-06-02 13:39:06 +02:00
Ricardo Wurmus d22546cf80
gnu: r-minimal: Update to 3.5.0. 
* gnu/packages/statistics.scm (r-with-tests): New variable derived from
r-minimal; update to 3.5.0.
[arguments]: Build recommended packages.
(r-minimal): Inherit from r-with-tests.
[arguments]: Disable recommended packages and tests.
 2018-06-02 13:39:06 +02:00
Clément Lassieur d5452aa201
gnu: emacs-elfeed: Update to 3.0.0. 
* gnu/packages/emacs.scm (emacs-elfeed): Update to 3.0.0.
 2018-06-02 13:05:08 +02:00
Mark H Weaver 1a3e3162ac
gnu: icecat: Add more fixes from upstream esr52. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from
the upstream mozilla-esr52 repository.
 2018-06-01 12:51:43 -04:00
Ricardo Wurmus 65a9f6b6cf
gnu: qtbase: Fix build on older kernels. 
* gnu/packages/qt.scm (qtbase)[arguments]: Add configure flags
"-no-feature-getentropy" and "-no-feature-renameat2".
 2018-06-01 17:33:25 +02:00
Ludovic Courtès 9f160a0d3c
vm: Use 'with-extensions'. 
* gnu/system/vm.scm (system-docker-image)[build]: Use
'with-extensions'.  Remove 'add-to-load-path' calls.
 2018-06-01 15:21:28 +02:00
Ludovic Courtès 33d8a87104
bootloader: grub: Use 'with-extensions'. 
* gnu/bootloader/grub.scm (svg->png): Use 'with-extensions'.  Remove
'add-to-load-path' calls.
* gnu/build/svg.scm: Use (rsvg) and (cairo) the normal way.  Remove
'module-autoload!' calls.
 2018-06-01 15:21:28 +02:00
Ludovic Courtès 31a5d694a3
bootloader: grub: Simplify 'svg->png'. 
* gnu/bootloader/grub.scm (svg->png): Remove now unneeded
  #:guile-for-build argument.
 2018-06-01 15:21:28 +02:00
Ludovic Courtès ff913cf514
tests: ssh: Use 'with-extensions'. 
* gnu/tests/ssh.scm (run-ssh-test)[test]: Wrap body in
'with-extensions'.  Remove %load-path manipulation code.
 2018-06-01 15:21:28 +02:00
Robin Templeton 514026d7de
gnu: rust: Add support for building 32-bit packages on 64-bit hosts. 
* gnu/packages/rust.scm (rust-bootstrap, rust-1.23): Use
nix-system->gnu-triplet to determine the system type.
(rust-1.19): Use readelf instead of nm in the atomic-lock-free test.
(rust-1.23): Disable the cargo_test_env test. Disable parallel execution of
tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-01 13:50:27 +02:00
Timothy Sample a078a6ec3b
gnu: Add git-annex. 
* gnu/packages/version-control.scm (git-annex): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-01 13:50:27 +02:00
Timothy Sample 4e5d9bf20e
gnu: Add ghc-disk-free-space. 
* gnu/packages/haskell.scm (ghc-disk-free-space): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-01 13:50:27 +02:00
Timothy Sample 1ea3971992
gnu: ghc-psqueues: Allow building with newer versions of QuickCheck. 
* gnu/packages/haskell.scm (ghc-psqueues)[arguments]: Add configure
flag to allow newer versions of QuickCheck.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-01 13:50:27 +02:00
Timothy Sample 6950a45073
gnu: Add ghc-safesemaphore. 
* gnu/packages/haskell.scm (ghc-safesemaphore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-01 13:50:27 +02:00
Timothy Sample 92c2097bc2
gnu: Add ghc-esqueleto. 
* gnu/packages/haskell.scm (ghc-esqueleto): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-01 13:50:26 +02:00
Timothy Sample a39e6faee9
gnu: Add ghc-ifelse. 
* gnu/packages/haskell.scm (ghc-ifelse): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-01 13:50:26 +02:00
Timothy Sample e3aae496f9
gnu: Add ghc-feed. 
* gnu/packages/haskell.scm (ghc-feed): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-01 13:50:26 +02:00
Timothy Sample 4c798726b4
gnu: Add ghc-bloomfilter. 
* gnu/package/haskell.scm (ghc-bloomfilter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-01 13:50:26 +02:00
Rouby Pierre-Antoine 93b83eb31e
services: Add hpcguix-web. 
* gnu/service/web.scm (<hpcguix-web-configuration>): New record-type.
  (%hpcguix-web-accounts): New variable.
  (%hpcguix-web-activation,hpcguix-web-shepherd-service,
  hpcguix-web-service-type): New procedures.
* gnu/tests/web.scm (run-hpcguix-web-server-test): New procedure.
  (%hpcguix-web-specs, %hpcguix-web-os, %test-hpcguix-web): New variable.
* doc/guix.texi (Web Services): Add 'hpcguix-web'.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-01 13:50:26 +02:00
Rouby Pierre-Antoine d6a4dfec90
gnu: Add hpcguix-web. 
* gnu/package/web.scm (hpcguix-web): New variable.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-06-01 13:50:26 +02:00
Ludovic Courtès 7a4e2eaab3
marionette: Add 'wait-for-tcp-port'. 
* gnu/build/marionette.scm (wait-for-tcp-port): New procedure.
* gnu/tests/dict.scm (run-dicod-test)["connect inside"]: Use it instead
of the inline loop.
 2018-06-01 13:50:26 +02:00
Ludovic Courtès 5ede50b850
gnu: emacs-w3m: Update and allow builds with Emacs 26. 
* gnu/packages/emacs.scm (emacs-w3m)[source]: Grab the source from
github.com.
[native-inputs]: Add TEXINFO.
[arguments]: Add 'support-emacs!' phase.  In 'patch-exec-paths' phase,
make w3m.el and w3m-image.el writable.  Remove substitution for
'w3m-image-viewer', which no longer exists.
 2018-06-01 13:50:26 +02:00
Stefan Stefanović 8674abb1dd
gnu: sddm: Fix CMake build. 
* gnu/packages/display-managers.scm (sddm): Fix CMake build.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch: New file.

Signed-off-by: Rutger Helling <rhelling@mykolab.com>
 2018-06-01 12:17:00 +02:00
Leo Famulari e90322d201
gnu: prosody: Update to 0.10.2 [fixes CVE-2018-10847]. 
* gnu/packages/messaging.scm (prosody): Update to 0.10.2.
 2018-05-31 20:31:46 -04:00
Konrad Hinsen 555ab0853b
gnu: Add emacs-zotxt. 
* gnu/packages/emacs.scm (emacs-zotxt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-05-31 18:13:09 +02:00
Konrad Hinsen 45dca193a4
gnu: Add emacs-org-caldav. 
* gnu/packages/emacs.scm (emacs-org-caldav): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-05-31 18:13:08 +02:00
Konrad Hinsen ec8a9892d1
gnu: Add python-bigfloat. 
* gnu/packages/python.scm (python-bigfloat, python2-bigfloat): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-05-31 18:13:08 +02:00
Fis Trivial 73d854232f
gnu: bear: Fix python path. 
* gnu/packages/build-tools.scm (bear)
[inputs]: Add python-wrapper.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-05-31 18:13:08 +02:00
Ludovic Courtès b1059b38b2
system: 'read-boot-parameters' provides a more meaningful warning. 
'system' here was bound to Guile's 'system' procedure.

* gnu/system.scm (read-boot-parameters): Fix argument for fallback
warning.
 2018-05-31 18:13:08 +02:00
Ludovic Courtès 69a05eab35
file-systems: Always wait for devices to show up. 
Previously, 'canonicalize-device-spec' would wait for devices when they
were specified as a label or UUID, but would not wait when the user
passed a "/dev" file name directly.  This could cause problems when
the /dev node takes a while to show up.

* gnu/build/file-systems.scm (canonicalize-device-spec): Add 'resolve'
call in the 'string?' case.
 2018-05-31 18:13:08 +02:00
Ricardo Wurmus 404e5c7d7d
gnu: r-servr: Update to 0.10. 
* gnu/packages/web.scm (r-servr): Update to 0.10.
[native-inputs]: Remove r-rcpp.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus ce8b9e3b1c
gnu: r-seurat: Update to 2.3.1. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.1.
[propagated-inputs]: Remove r-gridextra; add r-reticulate.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 508dd24abe
gnu: r-shiny: Update to 1.1.0. 
* gnu/packages/web.scm (r-shiny): Update to 1.1.0.
[source]: Fetch from git.
[propagated-inputs]: Add r-crayon.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus eb0d599a67
gnu: r-rjson: Update to 0.2.19. 
* gnu/packages/web.scm (r-rjson): Update to 0.2.19.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 71644c0ee8
gnu: r-htmltable: Update to 1.12. 
* gnu/packages/web.scm (r-htmltable): Update to 1.12.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus beb0878fe5
gnu: r-directlabels: Update to 2018.05.22. 
* gnu/packages/statistics.scm (r-directlabels): Update to 2018.05.22.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 089e037638
gnu: r-ranger: Update to 0.10.0. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.10.0.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 14bb6f5f83
gnu: r-tclust: Update to 1.4-1. 
* gnu/packages/statistics.scm (r-tclust): Update to 1.4-1.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9fad62743c
gnu: r-caret: Update to 6.0-80. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-80.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9bcc68fbf6
gnu: r-quantreg: Update to 5.36. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.36.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 13dc492435
gnu: r-rrcov: Update to 1.4-4. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-4.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 6f96c2d89e
gnu: r-ggthemes: Update to 3.5.0. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.5.0.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 366dd8d7cb
gnu: r-runit: Update to 0.4.32. 
* gnu/packages/statistics.scm (r-runit): Update to 0.4.32.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus edb29f2986
gnu: r-purrr: Update to 0.2.5. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.5.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus e94d827440
gnu: r-tidyr: Update to 0.8.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.1.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 1957c20e0c
gnu: r-synchronicity: Update to 1.3.4. 
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.4.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 7da0790e2a
gnu: r-rngtools: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-rngtools): Update to 1.3.1.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 3a6051659d
gnu: r-pkgmaker: Update to 0.27. 
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.27.
[propagated-inputs]: Add r-bibtex, r-magrittr, r-stringi, and r-withr.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus b4ca0076bd
gnu: r-lambda-r: Update to 1.2.3. 
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.3.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus a52bb97a79
gnu: r-plotrix: Update to 3.7-2. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-2.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 1ce6be5ee2
gnu: r-data-table: Update to 1.11.4. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.4.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 2d7758c1d6
gnu: r-rlang: Update to 0.2.1. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.2.1.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 624283a107
gnu: r-knitrbootstrap: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.2.
[propagated-inputs]: Add r-markdown.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 22cdc16fa4
gnu: r-pheatmap: Update to 1.0.10. 
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.10.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 99b225f3eb
gnu: r-bit: Update to 1.1-14. 
* gnu/packages/statistics.scm (r-bit): Update to 1.1-14.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 3c441be0f3
gnu: r-kernlab: Update to 0.9-26. 
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-26.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus ad016826c9
gnu: r-rmysql: Update to 0.10.15. 
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.15.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus aea3be250c
gnu: r-mice: Update to 3.0.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.0.0.
[propagated-inputs]: Add r-broom, r-dplyr, r-mitml, and r-rlang.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 6034a62a1b
gnu: r-callr: Update to 2.0.4. 
* gnu/packages/cran.scm (r-callr): Update to 2.0.4.
[propagated-inputs]: Add r-processx; remove r-assertthat, r-crayon, r-debugme,
and r-testthat.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus a8b4677b7c
gnu: r-openxlsx: Update to 4.1.0. 
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.
[propagated-inputs]: Add r-zip.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus e86d3cc501
gnu: r-shinyace: Update to 0.3.1. 
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.1.
[propagated-inputs]: Add r-jsonlite.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus a80606308a
gnu: r-processx: Update to 3.1.0. 
* gnu/packages/cran.scm (r-processx): Update to 3.1.0.
[propagated-inputs]: Remove r-debugme; add r-testthat.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9944399ae3
gnu: r-ggally: Update to 1.4.0. 
* gnu/packages/cran.scm (r-ggally): Update to 1.4.0.
[inputs]: Add libressl.
[propagated-inputs]: Add r-rlang.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 13079c143b
gnu: r-psych: Update to 1.8.4. 
* gnu/packages/cran.scm (r-psych): Update to 1.8.4.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus aadb9ee6df
gnu: r-pillar: Update to 1.2.3. 
* gnu/packages/cran.scm (r-pillar): Update to 1.2.3.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 65ea783f6c
gnu: r-utf8: Update to 1.1.4. 
* gnu/packages/cran.scm (r-utf8): Update to 1.1.4.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus c36745cf95
gnu: r-ggjoy: Update to 0.4.1. 
* gnu/packages/cran.scm (r-ggjoy): Update to 0.4.1.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus cda93e8399
gnu: r-dtw: Update to 1.20-1. 
* gnu/packages/cran.scm (r-dtw): Update to 1.20-1.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus fabf09934b
gnu: r-ica: Update to 1.0-2. 
* gnu/packages/cran.scm (r-ica): Update to 1.0-2.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 1e31e8bc74
gnu: r-sm: Update to 2.2-5.5. 
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.5.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus da5cca36b7
gnu: r-hardyweinberg: Update to 1.6.1. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.1.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 0759d87dfc
gnu: r-ggrepel: Update to 0.8.0. 
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.0.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus b13b56743b
gnu: r-cvst: Update to 0.2-2. 
* gnu/packages/cran.scm (r-cvst): Update to 0.2-2.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 975ea10d6f
gnu: r-energy: Update to 1.7-4. 
* gnu/packages/cran.scm (r-energy): Update to 1.7-4.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 90f1ecb939
gnu: r-emdbook: Update to 1.3.10. 
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.10.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 0acbf8bbb7
gnu: r-inline: Update to 0.3.15. 
* gnu/packages/cran.scm (r-inline): Update to 0.3.15.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 207c497e14
gnu: r-ff: Update to 2.2-14. 
* gnu/packages/cran.scm (r-ff): Update to 2.2-14.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus c81497b141
gnu: r-rcpp: Update to 0.12.17. 
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.17.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 5479e3e639
gnu: r-abbyyr: Update to 0.5.4. 
* gnu/packages/cran.scm (r-abbyyr): Update to 0.5.4.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 11de8673d1
gnu: Add r-bibtex. 
* gnu/packages/cran.scm (r-bibtex): New variable.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9f56ceecf3
gnu: Add r-reticulate. 
* gnu/packages/cran.scm (r-reticulate): New variable.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus d182828f53
gnu: Add r-zip. 
* gnu/packages/cran.scm (r-zip): New variable.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 84e7147ae3
gnu: Add r-mitml. 
* gnu/packages/cran.scm (r-mitml): New variable.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 03e718fbb1
gnu: Add r-pan. 
* gnu/packages/cran.scm (r-pan): New variable.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus fe1495e35c
gnu: Add r-jomo. 
* gnu/packages/cran.scm (r-jomo): New variable.
 2018-05-31 13:21:31 +02:00
Ricardo Wurmus 3ca317359c
gnu: r-vegan: Update to 2.5-2. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-2.
 2018-05-31 13:21:31 +02:00
Mark H Weaver 966e9575a3
gnu: linux-libre@4.14: Update to 4.14.47. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.47.
(%linux-libre-4.14-hash): Update hash.
(linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus-4.14)
(linux-libre-4.14): Remove patch.
 2018-05-31 04:17:22 -04:00
Mark H Weaver 55b68174aa
gnu: linux-libre@4.9: Update to 4.9.105. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.105.
Remove patch.
 2018-05-31 04:16:05 -04:00
Mark H Weaver 2aab213e36
gnu: linux-libre@4.4: Update to 4.4.135. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.135.
Remove patch.
 2018-05-31 04:14:57 -04:00
Efraim Flashner d2dde99e99
gnu: mariadb: Update to 10.1.33. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.33.
 2018-05-31 08:45:58 +03:00
Mark H Weaver 88a3465e4a
gnu: linux-libre: Revert bad upstream patch in 4.14/4.9/4.4 kernels. 
Apply the 1-line revert from upstream that was the sole fix in 4.14.47,
4.9.105, and 4.4.135.  Here we cherry-pick the patch until the corresponding
linux-libre versions are released.

* gnu/packages/linux.scm (linux-libre-4.14, linux-libre-4.9)
(linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus-4.14)
(linux-libre-4.4): Add the patch.
 2018-05-31 00:23:41 -04:00
Jonathan Brielmaier 706d6190ca
gnu: 0ad: Update to 0.0.23-alpha. 
* gnu/packages/games.scm (0ad-data, 0ad): Update to 0.0.23-alpha.
[source]: Use HTTPS URL.
[inputs]: Add libsodium.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-05-31 00:21:47 -04:00
Tobias Geerinckx-Rice e9ae846667
gnu: knot: Update to 2.6.7. 
* gnu/packages/dns.scm (knot): Update to 2.6.7.
 2018-05-31 04:54:58 +02:00
Tobias Geerinckx-Rice 51c4fb007a
gnu: duperemove: Update to 0.11. 
* gnu/packages/disk.scm (duperemove): Update to 0.11.
 2018-05-31 04:54:58 +02:00
Tobias Geerinckx-Rice 42d93a32ee
gnu: sakura: Update to 3.6.0. 
* gnu/packages/terminals.scm (sakura): Update to 3.6.0.
 2018-05-31 04:54:58 +02:00
Tobias Geerinckx-Rice 4ef1d9fd8b
gnu: stunnel: Update to 5.46. 
* gnu/packages/web.scm (stunnel): Update to 5.46.
 2018-05-31 04:54:57 +02:00
Tobias Geerinckx-Rice 6c4d1413f2
gnu: mkvtoolnix: Use INVOKE. 
* gnu/packages/video.scm (mkvtoolnix)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:57 +02:00
Tobias Geerinckx-Rice 8d5960d1b1
gnu: liba52: Use INVOKE. 
* gnu/packages/video.scm (liba52)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:57 +02:00
Tobias Geerinckx-Rice 3103101ec9
gnu: aalib: Use INVOKE. 
* gnu/packages/video.scm (aalib)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:56 +02:00
Tobias Geerinckx-Rice d840f6b98a
gnu: xapian: Use INVOKE. 
* gnu/packages/search.scm (xapian)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:56 +02:00
Tobias Geerinckx-Rice 6c738fe9e7
gnu: khal: Use INVOKE. 
* gnu/packages/calendar.scm (khal)[arguments]: Substitute INVOKE for
SYSTEM* and explicitly return #t from phases where needed.
 2018-05-31 04:54:56 +02:00
Tobias Geerinckx-Rice 4133914416
gnu: rss-bridge: Use INVOKE. 
* gnu/packages/web.scm (rss-bridge)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:55 +02:00
Tobias Geerinckx-Rice a145d7e9af
gnu: python-clf: Use INVOKE. 
* gnu/packages/web.scm (python-clf)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:55 +02:00
Tobias Geerinckx-Rice b8150fa091
gnu: python-internetarchive: Use INVOKE. 
* gnu/packages/web.scm (python-internetarchive)[arguments]: Substitute
INVOKE for SYSTEM*.
 2018-05-31 04:54:54 +02:00
Tobias Geerinckx-Rice 16b5dafc4d
gnu: httptunnel: Use INVOKE. 
* gnu/packages/web.scm (httptunnel)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:54 +02:00
Tobias Geerinckx-Rice 2cdc719193
gnu: surfraw: Use INVOKE. 
* gnu/packages/web.scm (surfraw)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:53 +02:00
Tobias Geerinckx-Rice 9cd760f13f
gnu: gumbo-parser: Use INVOKE. 
* gnu/packages/web.scm (gumbo-parser)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:53 +02:00
Tobias Geerinckx-Rice 7f4e5f19fa
gnu: sassc: Use INVOKE. 
* gnu/packages/web.scm (sassc)[arguments]: Substitute INVOKE for SYSTEM*
and its plumbing.
 2018-05-31 04:54:53 +02:00
Tobias Geerinckx-Rice b5d587055b
gnu: tidy: Use INVOKE. 
* gnu/packages/web.scm (tidy)[arguments]: Substitute INVOKE for SYSTEM*.
 2018-05-31 04:54:52 +02:00
Tobias Geerinckx-Rice 946e5e8aa1
gnu: tipp10: Use INVOKE. 
* gnu/packages/education.scm (tipp10)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:52 +02:00
Tobias Geerinckx-Rice aa0771556e
gnu: krona-tools: Use INVOKE. 
* gnu/packages/web.scm (krona-tools)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:51 +02:00
Tobias Geerinckx-Rice 359375e649
gnu: fcgiwrap: Use INVOKE. 
* gnu/packages/web.scm (fcgiwrap)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:51 +02:00
Tobias Geerinckx-Rice e80c05ac3e
gnu: ffmpeg: Use INVOKE. 
* gnu/packages/video.scm (ffmpeg)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-05-31 04:54:50 +02:00
Tobias Geerinckx-Rice 512f22f9e8
gnu: r-dplyr: Update to 0.7.5. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.5.
[propagated-inputs]: Add r-tidyselect.
 2018-05-31 04:54:50 +02:00
Tobias Geerinckx-Rice fc55fe2ef7
gnu: s6-rc: Update to 0.4.0.1. 
* gnu/packages/skarnet.scm (s6-rc): Update to 0.4.0.1.
 2018-05-31 04:54:50 +02:00
Tobias Geerinckx-Rice 1608969b03
gnu: skalibs: Update to 2.6.4.0. 
* gnu/packages/skarnet.scm (skalibs): Update to 2.6.4.0.
 2018-05-31 04:54:49 +02:00
Tobias Geerinckx-Rice 2c65c085f9
gnu: lchat: Mark up description. 
* gnu/packages/suckless.scm (lchat)[description]: Use @code.
 2018-05-31 04:54:48 +02:00
Tobias Geerinckx-Rice 82f22fac9f
gnu: lchat: Update to 0.0.0-3.f951919. 
* gnu/packages/suckless.scm (lchat): Update to 0.0.0-3.f951919.
[arguments]: Run tests.  Install man page.
 2018-05-31 04:54:48 +02:00
Tobias Geerinckx-Rice aa945bf637
gnu: human: Update to 0.3. 
* gnu/packages/suckless.scm (human): Update to 0.3.
[source]: Use version as the tag, and GIT-FILE-NAME.
 2018-05-31 04:54:48 +02:00
Tobias Geerinckx-Rice 8f7c6a5ff7
gnu: sent: Update to 1. 
* gnu/packages/suckless.scm (sent): Update to 1.
[source]: Switch to URL-FETCH/TARBALL.
 2018-05-31 04:54:47 +02:00
Tobias Geerinckx-Rice fc1a7b58d7
gnu: st: Update to 0.8.1. 
* gnu/packages/suckless.scm (st): Update to 0.8.1.
[arguments]: Relax ‘inhibit-terminfo-install’ regular expression.
 2018-05-31 04:54:47 +02:00
Tobias Geerinckx-Rice 504d16dd04
gnu: spoon: Update to 0.6. 
* gnu/packages/suckless.scm (spoon): Update to 0.6.
 2018-05-31 04:54:46 +02:00
Tobias Geerinckx-Rice a66fb3a14e
gnu: isync: Add zlib compression support. 
This adds ~400 KiB (.5%) to isync's now-73.1 MiB closure.

* gnu/packages/mail.scm (isync)[inputs]: Add ZLIB.
 2018-05-30 23:46:53 +02:00
Mark H Weaver 370e87fdbb
gnu: linux-libre: Update to 4.16.13. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.13.
(%linux-libre-hash): Update hash.
 2018-05-30 14:59:47 -04:00
Mark H Weaver 49e67982eb
gnu: linux-libre@4.14: Update to 4.14.46. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.46.
(%linux-libre-4.14-hash): Update hash.
 2018-05-30 14:58:49 -04:00
Mark H Weaver f9e1c2d72a
gnu: linux-libre@4.9: Update to 4.9.104. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.104.
 2018-05-30 14:58:09 -04:00
Mark H Weaver 13fcbf3cce
gnu: linux-libre@4.4: Update to 4.4.134. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.134.
 2018-05-30 14:57:22 -04:00
Clément Lassieur 6f8f98df7f
gnu: scribus: Fix build against Qt 5.11. 
* gnu/packages/scribus.scm (scribus)[arguments]: Add a 'patch-source' phase
that includes missing headers.
 2018-05-30 20:45:17 +02:00
Mark H Weaver d0e23e3940
gnu: vlc: Update to 3.0.3, and add more inputs. 
Co-authored-by: Roel Janssen <roel@gnu.org>

* gnu/packages/video.scm (vlc): Update to 3.0.3.
[native-inputs]: Add flex, bison, and gettext-minimal.
[inputs]: Replace ffmpeg-2.8 with the latest ffmpeg.  Replace lua-5.1 with
lua-5.2.  Add eudev, fribidi, libarchive, libass, libavc1394, libbluray,
libcaca, libdca, libdvdnav, libdvdread, libebml, libidn, libmatroska,
libmodplug, libmpeg2, libraw1394, librsvg, libsecret, libupnp, libva,
libvdpau, libvpx, libx264, qtsvg, samba, speexdsp, taglib, twolame, unzip,
wayland, and wayland-protocols.
[arguments]: Add BUILDCC=gcc to configure-flags.  In the 'patch-source' phase,
remove a vestigial substitution fix, enable the use of fribidi deprecated
interfaces, and adjust the file names in substitutions from "gui/qt4" to
"gui/qt".  Move the 'regenerate-plugin-cache' phase after 'strip', and in it,
set the timestamps to 1 second after the epoch, and use 'invoke'.  Add new
'wrap-executable' phase.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2018-05-30 11:02:57 +02:00
Clément Lassieur cfcd9a4551
gnu: wireshark: End phase with #t. 
* gnu/packages/networking.scm (wireshark)[arguments]: End 'patch-source' phase
with #t.
 2018-05-30 11:02:52 +02:00
Tobias Geerinckx-Rice 3fe0d36027
gnu: perl-text-format: Update to 0.61. 
* gnu/packages/perl.scm (perl-text-format): Update to 0.61.
 2018-05-30 10:06:57 +02:00
Tobias Geerinckx-Rice 2847d833be
gnu: python-oslo.utils: Update to 3.36.2. 
* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.36.2.
 2018-05-30 10:06:57 +02:00
Mark H Weaver a21bcd7079
Revert "gnu: swig: Patch for Octave 4.4." 
This reverts commit 3771000f89.
 2018-05-30 02:18:26 -04:00
Rutger Helling bfc25e015d
gnu: xpra: Update to 2.3.1. 
* gnu/packages/xorg.scm (xpra): Update to 2.3.1.
[inputs]: Add libxi.
 2018-05-30 08:14:23 +02:00
Mark H Weaver 7cb8d092d5
gnu: linux-libre@4.1: Update to 4.1.52. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.52.
 2018-05-29 23:16:14 -04:00
David Thompson f274f0774d
gnu: tiled: Update to 1.1.5. 
* gnu/packages/game-development.scm (tiled): Update to 1.1.5.
 2018-05-29 21:20:27 -04:00
Rouby Pierre-Antoine 9cf879a573
gnu: Add go-github-com-gorilla-context. 
* gnu/packages/golang.scm (go-github-com-gorilla-context): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine daed2c5e6a
gnu: Add go-github-com-google-gofuzz. 
* gnu/packages/golang.scm (go-github-com-google-gofuzz): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine 73fe19ef28
gnu: Add go-github-com-google-cadvisor. 
* gnu/packages/golang.scm (go-github-com-google-cadvisor): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine 7979f7df9a
gnu: Add go-github-com-emicklei-go-restful. 
* gnu/packages/golang.scm (go-github-com-emicklei-go-restful): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine 67836c5956
gnu: Add go-github-com-blang-semver. 
* gnu/packages/golang.scm (go-github-com-blang-semver): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine 7c2ebbd4a6
gnu: Add go-github-com-urfave-cli. 
* gnu/packages/golang.scm (go-github-com-urfave-cli): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-05-29 18:39:05 -04:00
Kei Kebreau 5a14e81e41
gnu: Update shogun to 6.1.3. 
* gnu/packages/machine-learning.scm (shogun): Update to 6.1.3.
[source]: Update snippet to remove proprietary software.
[arguments]: Rewrite list of symlinks in 'delete-broken-symlinks' phase.
Rewrite file lists given to substitute* in 'change-R-target-path' and
'fix-octave-modules' phases.  Adjust 'fix-octave-modules' for the update.
Add 'move-rxcpp' phase.  Rewrite configure-flags for the update.
[inputs]: Add eigen.
[native-inputs]: Add rxcpp.
 2018-05-29 18:20:38 -04:00
Kei Kebreau 3771000f89
gnu: swig: Patch for Octave 4.4. 
* gnu/packages/swig.scm (swig)[source]: Add patch.
* gnu/packages/patches/swig-octave-patches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-05-29 18:20:38 -04:00
Ricardo Wurmus 44884a9df8
gnu: eigen: Include unsupported features. 
* gnu/packages/algebra.scm (eigen)[source]: Do not build the tests for
unsupported features, but include the files.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
 2018-05-29 18:20:38 -04:00
Kei Kebreau 3a354e104a
gnu: Add rxcpp. 
* gnu/packages/machine-learning.scm (rxcpp): New variable.
 2018-05-29 18:20:37 -04:00
Kei Kebreau de658cc2f8
gnu: octave: Update to 4.4.0. 
* gnu/packages/maths.scm (octave): Update to 4.4.0.
 2018-05-29 18:20:37 -04:00