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Author SHA1 Message Date
Ludovic Courtès bc499b113a
system: Add 'initrd-modules' field. 
* gnu/system.scm (<operating-system>)[initrd-modules]: New field.
(operating-system-initrd-file): Pass #:linux-modules to 'make-initrd'.
* gnu/system/linux-initrd.scm (default-initrd-modules): New procedure.
(%base-initrd-modules): New macro.
(base-initrd): Add #:linux-modules and honor it.
* gnu/system/install.scm (embedded-installation-os): Use
'initrd-modules' instead of 'initrd'.
* gnu/tests/install.scm (%raid-root-os): Likewise.
* doc/guix.texi (operating-system Reference): Add 'initrd-modules'.
(Initial RAM Disk): Document it.  Adjust example to not use
 #:extra-modules.
 2018-03-02 13:53:10 +01:00
Ludovic Courtès 615a89e310
linux-initrd: Separate file system module logic. 
* gnu/system/linux-initrd.scm (vhash, lookup-procedure): New macros.
(file-system-type-modules, file-system-modules): New procedures.
(base-initrd)[cifs-modules, virtio-9p-modules]: Remove.
[file-system-type-predicate]: Remove.
Use 'file-system-modules' instead of 'find' +
'file-system-type-predicate'.
 2018-03-02 13:46:45 +01:00
Ludovic Courtès 8661ad2743
linux-modules: Add 'device-module-aliases' and related procedures. 
* gnu/build/linux-modules.scm (readlink*, stat->device-major)
(stat->device-minor): New procedures.
(%not-slash): New variable.
(read-uevent, device-module-aliases, read-module-aliases)
(current-alias-file, known-module-aliases, matching-modules): New
procedures.
 2018-03-02 13:46:33 +01:00
Ludovic Courtès f14c933df1
Add (guix glob). 
* guix/glob.scm, tests/glob.scm: New files.
* Makefile.am (MODULES): Add guix/glob.scm.
(SCM_TESTS): Add tests/glob.scm.
 2018-03-02 13:46:25 +01:00
Mike Gerwitz e37944d827
environment: Add --user. 
This change allows overriding the home directory of all filesystem mappings to
help hide the identity of the calling user in a container.

* doc/guix.texi (Invoking guix environment)[--container]: Mention --user.
[--user]: Add item.
* guix/scripts/environment.scm (show-help): Add --user.
(%options): Add --user.
(launch-environment/container) Add 'user' parameter.  Update doc.  Override
'user-mappings' using 'override-user-mappings'.  Consider override for chdir.
(mock-passwd, user-override-home, overrid-euser-dir): New procedures.
(guix-environment): Disallow --user without --container.  Provide user to
'launch-environment/container'.
* tests/guix-environment.sh: Add user test.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-02 11:55:43 +01:00
Mike Gerwitz 07ec349229
environment: Add --link-profile. 
This change is motivated by attempts to run programs (like GNU IceCat) within
containers.  The 'fontconfig' program, for example, is configured explicitly
to check ~/.guix-profile for additional fonts.

There were no existing container tests in 'tests/guix-environment.sh', but I
added one anyway for this change.

* doc/guix.texi (Invoking guix environment): Add '--link-profile'.
* guix/scripts/environment.scm (show-help): Add '--link-profile'.
(%options): Add 'link-profile' as '#\P', assigned to 'link-profile?'.
(link-environment): New procedure.
(launch-environment/container): Use it when 'link-profile?'.
[link-profile?]: New parameter.
(guix-environment): Leave when '--link-prof' but not '--container'.  Add
'#:link-profile?' argument to 'launch-environment/container' application.
* tests/guix-environment-container.sh: New '--link-profile' test.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-02 11:55:42 +01:00
Mark H Weaver 99654a1685
gnu: icecat: Add more fixes from upstream mozilla-esr52. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
 2018-03-02 01:31:30 -05:00
Mark H Weaver 8863f2f051
gnu: icecat: Update to 52.6.0-gnu1. 
* gnu/packages/gnuzilla.scm (icecat): Update to 52.6.0-gnu1.
[source]: Remove patches that are no longer needed.
* gnu/packages/patches/icecat-bug-1348660-pt5.patch,
gnu/packages/patches/icecat-bug-1414945.patch,
gnu/packages/patches/icecat-bug-1415133.patch,
gnu/packages/patches/icecat-bug-1424373-pt2.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2018-03-02 01:31:19 -05:00
Leo Famulari 703a8b7dc5
gnu: postgresql@9.6: Update to 9.6.8 [fixes CVE-2018-1058]. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.8.
 2018-03-01 20:01:48 -05:00
Leo Famulari bb17b2be49
gnu: postgresql: Update to 10.3 [fixes CVE-2018-1058]. 
* gnu/packages/databases.scm (postgresql): Update to 10.3.
 2018-03-01 20:01:48 -05:00
Leo Famulari e9802319f7
gnu: memcached: Update to 1.5.6. 
* gnu/packages/databases.scm (memcached): Update to 1.5.6.
 2018-03-01 20:00:12 -05:00
Mark H Weaver da525e714a
gnu: linux-libre: Update to 4.15.7. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.7.
(%linux-libre-hash): Update hash.
 2018-03-01 17:59:21 -05:00
Mark H Weaver 433765e599
gnu: linux-libre@4.14: Update to 4.14.23. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.23.
(%linux-libre-4.14-hash): Update hash.
 2018-03-01 17:58:35 -05:00
Mark H Weaver 8b1f76c443
gnu: linux-libre@4.9: Update to 4.9.85. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.85.
 2018-03-01 17:58:04 -05:00
Mark H Weaver 5026696033
gnu: linux-libre@4.4: Update to 4.4.119. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.119.
 2018-03-01 17:57:22 -05:00
Julien Lepiller 8147d7c675
gnu: php: Fix test failure. 
* gnu/packages/php.scm (php)[inputs]: Use gd-for-php.
(gd-for-php): New private variable.
* gnu/packages/patches/gd-CVE-2018-5711.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-03-01 22:25:28 +01:00
Tobias Geerinckx-Rice 738aa0ca1d
gnu: sdcc: Fix typo in description. 
* gnu/packages/sdcc.scm (sdcc)[description]: Fix (upstream) typo.  Add
hyphens.
 2018-03-01 22:21:02 +01:00
Tobias Geerinckx-Rice 1ff14bf2cd
gnu: sdcc: Update to 3.7.0. 
* gnu/packages/sdcc.scm (sdcc): Update to 3.7.0.
 2018-03-01 22:21:02 +01:00
Tobias Geerinckx-Rice bb47da4a6a
gnu: php: Update to 7.2.3. 
* gnu/packages/php.scm (php): Update to 7.2.3.
 2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice a9c0a133c0
gnu: python-stem: Update to 1.6.0. 
* gnu/packages/python.scm (python-stem): Update to 1.6.0.
[arguments]: Add ‘fix-test-environment’ phase.
 2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice 68e7632db0
gnu: onionshare: Update phase style. 
* gnu/packages/tor.scm (onionshare)[arguments]: Substitute INVOKE for
SYSTEM* and end phase with #t.
 2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice fbb0164a5f
gnu: privoxy: Update phase style. 
* gnu/packages/tor.scm (privoxy)[arguments]: Substitute INVOKE for
SYSTEM* and end phase with #t.
 2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice 66b89ee28e
gnu: python-stem: Update phase style. 
* gnu/packages/python.scm (python-stem)[arguments]: Substitute INVOKE
for SYSTEM* and end phase with #t.
 2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 57c734a628
gnu: liblo: Update to 0.29. 
* gnu/packages/audio.scm (liblo): Update to 0.29.
 2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 4972f9cc0a
gnu: nagios: Update to 4.3.4. 
* gnu/packages/monitoring.scm (nagios): Update to 4.3.4.
 2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 4f5452ab3a
gnu: libftdi: Use HTTPS home page. 
* gnu/packages/libftdi.scm (libftdi)[home-page]: Use HTTPS.
 2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 7314a5475e
gnu: dbacl: Use HTTPS home page. 
* gnu/packages/textutils.scm (dbacl)[home-page]: Use HTTPS.
 2018-03-01 22:20:59 +01:00
Tobias Geerinckx-Rice db317b38dc
gnu: dbacl: Update phase style. 
* gnu/packages/textutils.scm (dbacl)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t.
 2018-03-01 22:20:59 +01:00
Ricardo Wurmus b672a81607
gnu: Graft glibc to allow execution on Linux 2.6.32. 
* gnu/packages/patches/glibc-allow-kernel-2.6.32.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc/linux)[replacement]: New field.
(glibc-2.26-patched): New variable.
 2018-03-01 21:32:36 +01:00
Ricardo Wurmus b79e1fbe96
gnu: r-httpuv: Update to 1.3.6.1. 
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.1.
 2018-03-01 21:28:54 +01:00
Ricardo Wurmus bfae3f7121
gnu: r-lubridate: Update to 1.7.3. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.3.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus eaf0905970
gnu: r-tidyselect: Update to 0.2.4. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.4.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 35d12b05f0
gnu: r-rmarkdown: Update to 1.9. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.9.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus dafd13d5b2
gnu: r-rcpparmadillo: Update to 0.8.400.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.400.0.0.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 36e1202b2c
gnu: r-yaml: Update to 2.1.17. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.17.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus e3ddb56329
gnu: r-gdtools: Update to 0.1.7. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.7.
[inputs]: Add zlib.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus e24ccf46f1
gnu: r-rpart: Update to 4.1-13. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-13.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 744e06e717
gnu: r-mass: Update to 7.3-49. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-49.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 29c9c9c2c1
gnu: r-rmysql: Update to 0.10.14. 
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.14.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 5e38673455
gnu: r-pillar: Update to 1.2.1. 
* gnu/packages/cran.scm (r-pillar): Update to 1.2.1.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 9d6f392529
gnu: r-truncnorm: Update to 1.0-8. 
* gnu/packages/cran.scm (r-truncnorm): Update to 1.0-8.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 9aaf2813e2
gnu: r-scran: Update to 1.6.8. 
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.8.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 6a0e13906b
gnu: r-wgcna: Update to 1.63. 
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.63.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 61cbd49b30
gnu: r-topgo: Update to 2.30.1. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.1.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 535014ce60
gnu: r-genomicranges: Update to 1.30.3. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.3.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus eb8971b742
gnu: r-limma: Update to 3.34.9. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 22d96920d3
gnu: r-edger: Update to 3.20.9. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.9.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 99e4b11d81
gnu: r-shortread: Update to 1.36.1. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus b180893289
gnu: r-dexseq: Update to 1.24.3. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.3.
 2018-03-01 21:28:52 +01:00
Efraim Flashner 360ea2bbd5
gnu: efl: Use separate "include" output. 
* gnu/packages/enlightenment.scm (efl)[outputs]: Add 'include' output.
 2018-03-01 22:19:37 +02:00