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23149 Commits

Author SHA1 Message Date
Leo Famulari 7b14c48bd2
doc: Fix typo. 
* doc/guix.texi (Invoking guix pack): Fix typo.
 2017-08-10 16:11:01 -04:00
Leo Famulari 1e07daa27a
gnu: mercurial: Update to 4.2.3 [fixes CVE-2017-1000116]. 
* gnu/packages/version-control.scm (mercurial): Update to 4.2.3.
 2017-08-10 15:02:04 -04:00
Leo Famulari 38f8a882ab
gnu: git: Update to 2.14.1 [fixes CVE-2017-1000117]. 
* gnu/packages/version-control.scm (git): Update to 2.14.1.
 2017-08-10 15:02:04 -04:00
Leo Famulari 5993f7c455
gnu: subversion: Update to 1.8.19 [fixes CVE-2017-9800]. 
* gnu/packages/version-control.scm (subversion): Update to 1.8.19.
[source]: Add alternate URL.
 2017-08-10 15:02:04 -04:00
Oleg Pykhalov f262f44683
gnu: Add emacs-engine-mode. 
* gnu/packages/emacs.scm (emacs-engine-mode): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-08-10 22:25:25 +05:30
Leo Famulari 783daa4982
gnu: libsoup: Update to 2.58.2 (fixes CVE-2017-2885). 
* gnu/packages/gnome.scm (libsoup): Update to 2.58.2.
 2017-08-10 12:25:31 -04:00
Tobias Geerinckx-Rice ddde3f6be1
gnu: catimg: Update to 2.4.0. 
* gnu/packages/image-viewers.scm (catimg): Update to 2.4.0.
 2017-08-10 17:26:08 +02:00
Tobias Geerinckx-Rice 226685faa5
gnu: cppcheck: Update to 1.80. 
* gnu/packages/check.scm (cppcheck): Update to 1.80.
 2017-08-10 17:26:07 +02:00
Tobias Geerinckx-Rice c63b83a40f
gnu: vdirsyncer: Update to 0.16.1. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.1.
 2017-08-10 17:26:07 +02:00
Ben Woodcroft 37b08547e4
gnu: ruby-bio-commandeer: Update to 0.4.0. 
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.4.0.
 2017-08-10 22:20:38 +10:00
Oleg Pykhalov 27feda65e7
gnu: Add emacs-erc-hl-nicks. 
* gnu/packages/emacs.scm (emacs-erc-hl-nicks): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-08-10 14:55:09 +05:30
Oleg Pykhalov 1ee879e967
gnu: Add emacs-gitpatch. 
By the way, “gitpatch.el” says different version than release tarball.
Do I need to ask a developer?
--8<---------------cut here---------------start------------->8---
;; Author: Feng Shu <tumashu@163.com>
;; Homepage: https://github.com/tumashu/gitpatch
;; Keywords: convenience
;; Package-Requires: ((emacs "24.3"))
;; Version: 0.10
--8<---------------cut here---------------end--------------->8---

>From 9eddf07fa401468738c2f48a25e51ddef2a3ceed Mon Sep 17 00:00:00 2001
From: Oleg Pykhalov <go.wigust@gmail.com>
Date: Sat, 29 Jul 2017 14:22:48 +0300
Subject: [PATCH] gnu: Add emacs-gitpatch.

* gnu/packages/emacs.scm (emacs-gitpatch): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-08-10 14:37:17 +05:30
Oleg Pykhalov a88adeb343
gnu: Add emacs-git-messenger. 
gnu/packages/emacs.scm (emacs-git-messenger): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-08-10 13:27:05 +05:30
Christopher Baines 1012056625
services: admin: Simplify the handling of the Tailon debug? option. 
* gnu/services/admin.scm (tailon-configuration-file-compiler): Simplify the
  handling of debug?.
 2017-08-09 23:50:35 +01:00
Christopher Baines 91fdc8a574
services: Update the Tailon service for Tailon 1.3.0. 
Tailon 1.3.0 (upgraded from 1.1.1) adds support for HTTP authentication.

* gnu/services/admin.scm (<tailon-configuration-file>): Add http-auth and
  users configuration values.
  (tailon-configuration-file-http-auth, tailon-configuration-file-users): New
  procedures.
  (tailon-configuration-file-compiler): Add support for the http-auth and
  users configuration options.
* doc/guix.texi (Monitoring Services): Document authentication for Tailon.
 2017-08-09 23:50:31 +01:00
Christopher Baines f2d8e7f720
services: Add missing wrap-lines option to tailon. 
* gnu/services/admin.scm (<tailon-configuration-file>): Add wrap-lines.
  (tailon-configuration-wrap-lines): New procedure.
  (tailon-configuration-file-compiler): Add support for wrap-lines.
* doc/guix.texi (Monitoring Services): Document the wrap-lines Tailon
  configuration option.
 2017-08-09 23:50:27 +01:00
Christopher Baines 761f5865c8
gnu: Update tailon to version 1.3.0. 
From version 1.1.1.

* gnu/packages/logging.scm (tailon)[version]: Change to 1.3.0.
  [inputs]: Add python-tornado-http-auth.
 2017-08-09 23:50:23 +01:00
Christopher Baines c795bc79d9
gnu: Add python-tornado-http-auth. 
* gnu/packages/python.scm (python-tornado-http-auth): New variable.
 2017-08-09 23:50:10 +01:00
Marius Bakke 4c6c683862
gnu: nmap: Update to 7.60. 
* gnu/packages/admin.scm (nmap): Update to 7.60.
 2017-08-10 00:15:35 +02:00
Marius Bakke 79d9525071
gnu: curl: Update replacement to 7.55.0. [security fixes] 
Fixes CVE-2017-1000099, CVE-2017-1000100, and CVE-2017-100101.
See <https://curl.haxx.se/docs/security.html> for details.

* gnu/packages/curl.scm (curl)[replacement]: Update to 7.55.0.
(curl-7.54.1): Rename to ...
(curl-7.55.0): ... this.
[source]: Update source URI to match upstream compression method change.
[arguments]: Add 'fix-Makefile' phase.
 2017-08-10 00:15:35 +02:00
Marius Bakke 2e8c61fcf0
gnu: samba: Update to 4.6.7. 
* gnu/packages/samba.scm (samba): Update to 4.6.7.
 2017-08-10 00:15:34 +02:00
Leo Famulari ae7f246cf1
gnu: python-nbformat: Update to 4.3.0. 
* gnu/packages/python.scm (python-nbformat, python2-nbformat): Update to 4.3.0.
 2017-08-09 16:52:51 -04:00
Leo Famulari df851f5a91
download: Add the canonical GnuPG download site. 
* guix/download.scm (%mirrors)<gnupg>: Add https://gnupg.org.
 2017-08-09 16:01:36 -04:00
Leo Famulari 10756b9ed1
gnu: gnupg: Update to 2.1.23. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.23.
[arguments]: Remove 'enable-gpg2-is-gpg' from #:configure-flags, since it is now
the default.
 2017-08-09 16:01:33 -04:00
Ricardo Wurmus 1b22ecdac4
gnu: r-wgcna: Update to 1.61. 
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.61.
[propagated-inputs]: Add r-rcpp, r-robust, r-survival.
 2017-08-09 20:08:13 +02:00
Ricardo Wurmus c5f744a68d
gnu: Add r-robust. 
* gnu/packages/statistics.scm (r-robust): New variable.
 2017-08-09 20:08:13 +02:00
Ricardo Wurmus 5d0afe8849
gnu: Add r-fit-models. 
* gnu/packages/statistics.scm (r-fit-models): New variable.
 2017-08-09 20:08:13 +02:00
Ricardo Wurmus 0bae5fd6a7
gnu: Add r-rrcov. 
* gnu/packages/statistics.scm (r-rrcov): New variable.
 2017-08-09 20:08:13 +02:00
Ricardo Wurmus 23841b2573
gnu: Add r-pcapp. 
* gnu/packages/statistics.scm (r-pcapp): New variable.
 2017-08-09 20:08:13 +02:00
Ricardo Wurmus 0ecd065839
gnu: r-gdtools: Update to 0.1.5. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.5.
 2017-08-09 20:08:12 +02:00
Ricardo Wurmus c3317cd9fb
gnu: r-ggbeeswarm: Update to 0.6.0. 
* gnu/packages/statistics.scm (r-ggbeeswarm): Update to 0.6.0.
 2017-08-09 20:08:12 +02:00
Mark H Weaver ea0277abcd
gnu: icecat: Add more fixes from upstream mozilla-esr52. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add fixes for CVE-2017-7802,
CVE-2017-7803, CVE-2017-7807, and the remaining 6 out of 23 changesets for
CVE-2017-7779.
 2017-08-09 13:16:52 -04:00
Mark H Weaver 12025fb9b0
gnu: icecat: Rename patches to reflect CVE assignments. 
Document that our existing patches include fixes for CVE-2017-7753,
CVE-2017-7784, CVE-2017-7786, CVE-2017-7787, CVE-2017-7791, CVE-2017-7792,
CVE-2017-7798, CVE-2017-7798, CVE-2017-7800, CVE-2017-7801, and 17 out of 23
changesets for CVE-2017-7779.

* gnu/packages/gnuzilla.scm (icecat)[source]: Rename patches to reflect CVE
assignments.
 2017-08-09 13:16:43 -04:00
ng0 28e12d6c81
gnu: gnurl: Update to 7.55.0. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.0.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2017-08-09 18:16:51 +02:00
Tobias Geerinckx-Rice a4afc536f9
gnu: virt-manager: Update to 1.4.2. 
* gnu/packages/virtualization.scm (virt-manager): Update to 1.4.2.
 2017-08-09 16:45:32 +02:00
Tobias Geerinckx-Rice 448052b713
gnu: libgdata: Disable failing tests. 
* gnu/packages/gnome.scm (libgdata)[arguments]: Add ‘disable-failing-tests’
phase.
 2017-08-09 16:31:06 +02:00
Ricardo Wurmus 18f5d2a70a
gnu: Add reference to (gnu packages graph). 
This is a follow-up to 1738138cb3.
 2017-08-09 15:43:35 +02:00
Ricardo Wurmus 1738138cb3
gnu: r-igraph: Move to (gnu packages graph). 
* gnu/packages/statistics.scm (r-igraph): Move from here...
* gnu/packages/graph.scm (r-igraph): ...to here.
 2017-08-09 14:47:47 +02:00
Ricardo Wurmus 31476df32e
gnu: Add python-igraph. 
* gnu/packages/graph.scm (python-igraph): New variable.
 2017-08-09 14:47:47 +02:00
Ricardo Wurmus e57fffad90
gnu: Add igraph. 
* gnu/packages/graph.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2017-08-09 14:47:47 +02:00
Efraim Flashner ea77385c4c
gnu: viewnior: Don't build icon-theme.cache. 
* gnu/packages/image-viewers.scm (viewnior)[arguments]: Add phase to
disable building the icon-theme.cache.
 2017-08-09 14:09:43 +03:00
Manolis Ragkousis 2d5bf32b8a
gnu: googletest: Build shared libraries. 
* gnu/packages/check.scm (googletest)[arguments]: Pass "-DBUILD_SHARED_LIBS=ON"
  in #:configure-flags.
 2017-08-09 13:53:29 +03:00
Manolis Ragkousis c608fe8cf3
gnu: Add ois. 
* gnu/packages/game-development.scm (ois): New variable.
 2017-08-09 13:53:16 +03:00
Eric Bavier d84b09e937
gnu: dealii: Update to 8.5.0. 
* gnu/packages/maths.scm (dealii): Update to 8.5.0.
[arguments]: Delete 'hint-example-prefix phase, which would need adjusting for
this version.  Users can use e.g. 'export DEAL_II_DIR=$GUIX_ENVIRONMENT'.
Adjust configuration flags.
 2017-08-09 01:56:53 -05:00
Eric Bavier 05cca6ce90
gnu: stress-make: Patch default shell. 
* gnu/packages/debug.scm (stress-make)[arguments]: Add 'set-default-shell
phase.
 2017-08-09 01:56:53 -05:00
Eric Bavier bd5b5ac0c5
gnu: suitesparse: Update to 4.5.5. 
* gnu/packages/maths.scm (suitesparse): Update to 4.5.5.
[source]: Add 'modules' and 'snippet' field to remove bundled source.
[arguments]: Remove 'prepare-out' phase.  Adjust #:make-flags for metis.
Make build parallel, since it now appears to be safe.
[inputs]: Add metis.
 2017-08-09 01:56:53 -05:00
Eric Bavier 2509522c4f
gnu: suitesparse: Use modify-phases. 
* gnu/packages/maths.scm (suitesparse)[arguments]: Use modify-phases.
 2017-08-09 01:56:53 -05:00
Eric Bavier 9731c412e9
gnu: petsc, slepc: Use 'parallel-job-count'. 
* gnu/packages/maths.scm (petsc, slepc)[arguments]: Set #:make-flags to
override default unlimited '-j'.
(petsc)[arguments]: Scrub build machine cores from installed files in
'clean-local-references' phase.
 2017-08-09 01:56:53 -05:00
Eric Bavier baeaf8821d
gnu: slepc: Update to 3.7.4. 
* gnu/packages/maths.scm (slepc): Update to 3.7.4.
[source]: Use direct source link.  Remove 'file-name' field.
 2017-08-09 01:56:52 -05:00
Eric Bavier 41a46a5035
gnu: petsc: Update to 3.7.6. 
* gnu/packages/maths.scm (petsc): Update to 3.7.6.
 2017-08-09 01:56:46 -05:00